Dissipative-particle-dynamics model of biofilm growth

Zhijie Xu, Paul Meakin, Alexandre Tartakovsky, and Timothy D. Scheibe
Phys. Rev. E 83, 066702 – Published 13 June 2011

Abstract

A dissipative-particle-dynamics model for the quantitative simulation of biofilm growth controlled by substrate (nutrient) consumption, advective and diffusive substrate transport, and hydrodynamic interactions with fluid flow (including fragmentation and reattachment) is described. The model was used to simulate biomass growth, decay, and spreading. It predicts how the biofilm morphology depends on flow conditions, biofilm growth kinetics, the rheomechanical properties of the biofilm, and adhesion to solid surfaces. The morphology of the model biofilm depends strongly on its rigidity and the magnitude of the body force that drives the fluid over the biofilm.

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  • Received 21 December 2010

DOI:https://doi.org/10.1103/PhysRevE.83.066702

©2011 American Physical Society

Authors & Affiliations

Zhijie Xu1,*, Paul Meakin2,3,4, Alexandre Tartakovsky1, and Timothy D. Scheibe5

  • 1Computational Mathematics Group, Fundamental and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, USA
  • 2Center for Advanced Modeling and Simulation, Idaho National Laboratory, Idaho Falls, Idaho 83415, USA
  • 3Physics of Geological Processes, University of Oslo, NO-0316 Oslo, Norway
  • 4Multiphase Flow Assurance Innovation Center, Institute for Energy Technology, NO-2027 Kjeller, Norway
  • 5Hydrology Technical Group, Energy and Environment Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, USA

  • *zhijie.xu@pnl.gov

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Vol. 83, Iss. 6 — June 2011

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