Versatile Approach to Access the Low Temperature Thermodynamics of Lattice Polymers and Proteins

Thomas Wüst and David P. Landau
Phys. Rev. Lett. 102, 178101 – Published 29 April 2009

Abstract

We show that Wang-Landau sampling, combined with suitable Monte Carlo trial moves, provides a powerful method for both the ground state search and the determination of the density of states for the hydrophobic-polar (HP) protein model and the interacting self-avoiding walk (ISAW) model for homopolymers. We obtain accurate estimates of thermodynamic quantities for HP sequences with >100 monomers and for ISAWs up to >500 monomers. Our procedure possesses an intrinsic simplicity and overcomes the limitations inherent in more tailored approaches making it interesting for a broad range of protein and polymer models.

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  • Received 18 December 2008

DOI:https://doi.org/10.1103/PhysRevLett.102.178101

©2009 American Physical Society

Authors & Affiliations

Thomas Wüst* and David P. Landau

  • Center for Simulational Physics, The University of Georgia, Athens, Georgia 30602, USA

  • *twuest@physast.uga.edu

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Vol. 102, Iss. 17 — 1 May 2009

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