Electrophoretic Collision of a DNA Molecule with an Insulating Post

Greg C. Randall and Patrick S. Doyle
Phys. Rev. Lett. 93, 058102 – Published 29 July 2004

Abstract

We study the dynamics of single DNA molecules driven by an electric field into a stationary obstacle. These collisions are broadly classified as “hook” and “roll-off” events. We show that obstacle-induced electric field gradients stretch impacting DNA and thus greatly influence the hooking probability. Consequently, in addition to collision geometry, determination of the hooking probability depends on the Deborah number (De) for 0.5<De<40. Individual DNA impact dynamics are highly configuration sensitive, characteristic of polymers in elongational flows and fields.

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  • Received 16 January 2004

DOI:https://doi.org/10.1103/PhysRevLett.93.058102

©2004 American Physical Society

Authors & Affiliations

Greg C. Randall and Patrick S. Doyle

  • Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA

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Issue

Vol. 93, Iss. 5 — 30 July 2004

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