How adsorption influences DNA denaturation

A. E. Allahverdyan, Zh. S. Gevorkian, Chin-Kun Hu, and Th. M. Nieuwenhuizen
Phys. Rev. E 79, 031903 – Published 9 March 2009

Abstract

The thermally induced denaturation of DNA in the presence of an attractive solid surface is studied. The two strands of DNA are modeled via two coupled flexible chains without volume interactions. If the two strands are adsorbed on the surface, the denaturation phase transition disappears. Instead, there is a smooth crossover to a weakly naturated state. Our second conclusion is that even when the interstrand attraction alone is too weak for creating a naturated state at the given temperature and also when the surface-strand attraction alone is too weak for creating an adsorbed state, the combined effect of the two attractions can lead to a naturated and adsorbed state.

    • Received 2 June 2007

    DOI:https://doi.org/10.1103/PhysRevE.79.031903

    ©2009 American Physical Society

    Authors & Affiliations

    A. E. Allahverdyan1, Zh. S. Gevorkian1,2,3, Chin-Kun Hu3,4, and Th. M. Nieuwenhuizen5

    • 1Yerevan Physics Institute, Alikhanian Brothers St. 2, Yerevan 375036, Armenia
    • 2Institute of Radiophysics and Electronics, Ashtarak-2, 378410, Armenia
    • 3Institute of Physics, Academia of Sinica, Nankang, Taipei 11529, Taiwan
    • 4Center for Nonlinear and Complex Systems and Department of Physics, Chung-Yuan Christian University, Chungli 32023, Taiwan
    • 5Institute for Theoretical Physics, University of Amsterdam, Valckenierstraat 65, 1018 XE Amsterdam, The Netherlands

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    Issue

    Vol. 79, Iss. 3 — March 2009

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