Fottea 8(2): 87-104, 2008 | DOI: 10.5507/fot.2008.004

Phylogeny and classification of Zygnematophyceae (Streptophyta): current state of affairs.

Andrey A. Gontcharov
Institute of Biology and Soil Science, 690022, Vladivostok-22, Russia

Conjugates (Zygnematophyceae) represent the most species-rich (ca. 4000 spp) algal lineage within the Streptophyta. Studies using various molecular markers have placed the class as one of the crown groups in Streptophyta and even suggested a close relationship between the zygnematophycean algae and land plants. Phenotypic diversity complicates systematics of the class and the relationships between its taxa remain poorly understood. Molecular phylogenetic analyses have established a number of clades in the class and revealed a disagreement between the traditional taxonomic structure of Zygnematophyceae and the pattern of phylogenetic relationships between the class members. In this paper, an overview of recent advances in our understanding of the phylogeny and classification of conjugating green algae is presented, with emphasis on the major clades established in the class, the clades' structure and polyphyly of some genera. We describe the areas of conflict and agreement between molecular phylogeny and traditional morphology-based taxonomy and stress that phenotypic characters provide little evidence for inferring relationships between taxa even at low taxonomic levels.

Keywords: conjugates, phylogenetic relationship, polyphyly, Streptophyta, Zygnematophyceae

Received: May 15, 2008; Accepted: July 25, 2008; Published: September 1, 2008Show citation

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Gontcharov, A.A. (2008). Phylogeny and classification of Zygnematophyceae (Streptophyta): current state of affairs. Fottea8(2), 87-104. doi: 10.5507/fot.2008.004
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References

  1. Adam, Z., Turmel, M., Lemieux C. & Sankoff, D. (2007): Common intervals and symmetric difference in a model-free phylogenomics, with an application to streptophyte evolution. - J. Comput. Biol. 14: 436- 445. Go to original source...
  2. Besendahl, A. & Bhattacharya, D. (1999): Evolutionary analyses of small-subunil rDNA coding regions and the 1506 group I introns of Zygnematales (Charophyceae, Streptophyta). - J. Phycol. 35: 560- 569 Go to original source...
  3. Bhattacharya, D. & Medlin L. (1998): Algal phylogeny and the origin of land plants. - Plant Physiol. 116: 9-15. Go to original source...
  4. Bhattacharya, D., Surek, B., Rüsing, M., Damberger, S. & Melkonian, M. (1994): Group I introns are inherited through common ancestry in the nuclear-encoded rRNA of Zygnematales (Chlorophyta). - Proc. Natl. Acad. Sci. USA 91: 9916-9920. Go to original source...
  5. Bhattacharya, D., Damberger, S., Surek, B. & Melkonian, M. (1996): Primary and secondary structure analysis of the rDNA group I introns of the Zygnematales. - Curr. Genet. 29: 282-286. Go to original source...
  6. Biebel, P. (1975): Morphology and life cycles of saccoderm desmids in culture. - Beih. Nova Hedwigia 42: 39- 57.
  7. Bold, H. C. & Wynne, M. J. (1985): Introduction to the Algae. 2nd ed. - 720 pp. Prentice-Hall, Inc., Englewood Cliffs, New Jersey, USA.
  8. Bremer, K. (1985): Summary of green plant phylogeny and classification. - Cladistics 1: 369-385. Go to original source...
  9. Bremer, K., Humphries, C. J., Mishler, B. D. & Churchill, S. P. (1987): On cladistic relationships in green plants. - Taxon 36:339-349. Go to original source...
  10. Brook, A. J. (1981): The biology of desmids. Botanical Monographs Vol. 16. - 276 pp. Blackwell Scientific. Oxford, UK. Go to original source...
  11. Cavalier-Smith, T. (1981): Eukaryote kingdoms: Seven or nine? - BioSystems 14: 461-481. Go to original source...
  12. Cech T. R. (1988): Conserved sequences and structures of group I introns: building an active site for RNA catalysis. - Gene 73: 259-271 Go to original source...
  13. Chapman, R. L., Buchheim, M. A., Delwiche, C. F., Friedl, T., Huss, V. A. R., Karol, K. G., Lewis, L. A., Manhart, J., McCourt, R. M., Olsen, J. L. & Waters, D. A. (1998): Molecular systematics of the green algae. - In: Soltis, D. E., Soltis, P. S. & Doyle, J. J. (eds): Molecular systematics of plants II: 508-540 pp., Kluwer Academic, Boston, USA. Go to original source...
  14. Coleman, A.W. (2003): ITS2 is a double-edged tool for eukaryote evolutionary comparisons. - Trends Genet. 19: 370-375. Go to original source...
  15. Coleman, A. W., Preparata, R. M., Mehrotra, B. & Mai, J. C. (1998): Derivation of the secondary structure of the ITS-1 transcript in Volvocales and its taxonomic correlation. - Protist 149: 135-146. Go to original source...
  16. Cranwell, P. A. G., Jaworski, H. M. & Bickley, H. M. (1990): Hydrocarbons, sterols, esters and fatty acids in six freshwater chlorophytes. - Phytochemistry 29: 145-151. Go to original source...
  17. Croasdale, H., Flint, E. A. & Racine, M. M. (1994): Flora of. New Zealand. Freshwater algae, Desmids. Vol. III. - 218 pp. Lincoln, Manaaki Whenua Press.
  18. Denboh, T., Hendrayanti, D. & Ichimura, T. (2001): Monophyly of the genus Closterium and the order Desmidiales (Charophyceae, Chlorophyta) inferred from nuclear small subunit rDNA data. - J. Phycol. 37:1063-1072 Go to original source...
  19. Denboh, T., Ichimura, T., Hendrayanti, D. & Coleman, A.W. (2003): The Closterium moniliferum-ehrenbergii (Charophyceae, Chlorophyta) species complex viewed from the 1506 group I intron and ITS-2 of nuclear ribosomal DNA. - J. Phycol. 39: 960-977. Go to original source...
  20. Drummond, C. S., Hall, J., Karol, K. G., Delwiche, C. F. & McCourt, R. M. (2005): Phylogeny of Spirogyra and Sirogonium (Zygnematophyceae) based on rbcL sequencedata. - J. Phycol. 41:1055-64. Go to original source...
  21. Dujon, B. (1989): Group I introns as mobile genetic elements: facts and mechanistic speculations-a review. - Gene 82: 91-114. Go to original source...
  22. Engels, M. & Lorch, D. W. (1981): Some Ob-servations on Cell Wall Structure and Taxonomie of Phymatodocis nordstedtiana (Conjugatophyceae, Chlorophyta). - Pl. Syst. Evol. 138: 217-225. Go to original source...
  23. Engler, A. (1892): Syllabus der Vorlesungen über spezielle und medizinisch-pharmazeutische Botanik. Eine Übersicht über das Gesamte Pflanzenreich mit Berücksichtigung der Medizinal und Nutzpflanzen. - 184 pp., Gebrüder Bornträger, Berlin. Go to original source...
  24. Feliner, G. N. & Rosselló, J. A. (2007): Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants. - Mol. Phylog. Evol. 44: 911-919. Go to original source...
  25. Fott, B. (1971): Algenkunde. - 581 pp., Veb. Gustav Fischer Verlag, Jena.
  26. Fowke, L. C. & Picketi-Heaps, J. D. (1969a): Cell division in Spirogyra. I. Mitosis. - J. Phycol. 5: 240-259. Go to original source...
  27. Fowke, L. C. & Picketi-Heaps, J. D. (1969b): Cell division in Spirogyra. II. Cytokinesis. - J. Phycol. 5:273-281. Go to original source...
  28. Gerrath, J. F. (1993): The biology of desmids: A decade of progress. - In: Round, F. E. & Chapman, D. J. (eds): Progress in phycological research 9: 79-192 pp., Biopress, Bristol, UK.
  29. Gontcharov, A. A. (2005): Zygnematophyceae (Streptophyta) based on 18S rDNA sequence comparisons. - Botanical Zhur. 90: 518-531.
  30. Gontcharov, A. A. & Melkonian, M. (2004): Unusual position of the genus Spirotaenia (Zygnematophyccae) among strcptophytes revealed by SSU rDNA and rbcL sequence comparisons. - Phycologia 43: 105-113. Go to original source...
  31. Gontcharov, A. A. & Melkonian, M. (in press): In search of monophyletic taxa in the family Desmidiaceae (Zygnematophyceae, Viridiplantae): the genus Cosmarium Corda ex Ralfs.
  32. Gontcharov, A. A., Marin, B. & Melkonian, M. (2003): Molecular phylogeny of conjugating green algae (Zygnemophyceae, Streptophyta) inferred from SSU rDNA sequence comparisons. - J. Mol. Evol. 56: 89-104. Go to original source...
  33. Gontcharov, A. A., Marin, B. & Melkonian, M. (2004): Are combined analyses better than single gene phylogenies? A case study using SSU rDNA and rbcL sequence comparisons in the Zygnematophyceae (Streptophyta). - Mol. Biol. Evol. 21: 612-624. Go to original source...
  34. Gontcharov, A. A. & Melkonian, M. (2005): Molecular phylogeny of Staurastrum Meyen ex Ralfs and related genera (Zygnematophyceae,
Streptophyta) based on coding and noncoding rDNA sequence comparisons. - J. Phycol. 41, 887-899. Go to original source...
  35. Graham, L. E. (1993): Origin of land plants. - 287 pp., Wiley, New York, USA.
  36. Graham, L. E. (1996): Green algae to land plants: an evolutionary transition. - J. Plant Res. 109: 241- 251. Go to original source...
  37. Grolig, F. (1992): The cytoskeleton of the Zygnemataceae. - In: Menzel, D. (ed.): The Cytoskeleton of the Algae, 165-194 pp., CRC Press Inc., Boca Raton, FL, USA.
  38. Hall, J. D., Karol, K. G., McCourt, R. M. & Delwiche, C. F. (2008): Phylogeny of the conjugating green algae based on chloroplast and mitochondrial nucleotide sequence data. - J. Phycol. 44: 467-477. Go to original source...
  39. Haga, M. & Ehara, J. (1977): Observations on vegetative cells and the process of sexual reproduction in Spirotaenia obscura Ralfs. - Bull. Jap. Soc. Phycol. 25: 45-54.
  40. Hillis, D. M. (1996): Inferring complex phylogenies. - Nature 383:130-131. Go to original source...
  41. Hori, H., Lim, B.-L. & Osawa, S. (1985): Evolution of green plants as deduced from 5S rRNA sequences. - Proc. Natl. Acad. Sci. USA. 82: 820-823. Go to original source...
  42. Hoshaw, R. W. & Hilton, R. L. (1966): Observation on the sexual cycle of the saccoderm desmid Spirotaenia condensata. - J. Arizona-Nevada Acad. Sci. 4: 88-92. Go to original source...
  43. Hoshaw, R. W. & McCourt, R. M. (1988): The Zygnemataceae (Chlorophyta): Atwenty-year update of research. - Phycologia 27: 511-548. Go to original source...
  44. Hoshaw, R. W., McCourt, R. M. & Wang, J. C. (1990): Phylum Conjugaphyta. - In: Margulis, L., Carliss, J. O. & Melkonian, M. (eds): Handbook of Protoctista: 119-131 pp., Jones and Bartlett, Boston, USA.
  45. Jarman, M. & Pickett-Heaps, J. D. (1990): Cell division and nuclear movement in the saccoderm desmid Netrium interruptum. - Protoplasma 157: 136-143. Go to original source...
  46. Kadlubowska, J. Z. (1984): Conjugatophyceae I, Chlorophyta VIII, Zygnematales. - In: Etll, H., Gerloff, J., Heying, H. & Mollenhauer, D. (eds): Süsswasserflora von Mitteleuropa 16: 1-531 pp., Gustav Fischer Verlag, Stuttgart.
  47. Karol, K. G., McCourt, R. M., Cimino, M. T. & Delwiche, C. F. (2001): The closest living relatives of land plants. - Science 294: 2351-2353. Go to original source...
  48. Kenrick, P. & Crane, P. R. (1997): The Origin and Early Diversification of Land Plants: A Cladistic Study. - 441 pp., Smithsonian Inst Press, Washington.
  49. Kouwets, F. A. C. & Coesel, P. F. M. (1984): Taxonomic revision of the conjugatophycean family Peniaceae on the basis of cell wall ultrastructure. - J. Phycol. 20: 555-562. Go to original source...
  50. Kranz, H. D. & Huss, V. A. R. (1996): Molecular evolution of pteridophytes and their relationship to seed plants: Evidence from complete 18S rRNA gene sequences. - Plant Syst. Evol. 202: 1-11. Go to original source...
  51. Lambowitz, A. M. & Belfort, M. (1993): Introns as mobile genetic elements. - Annu. Rev. Biochem. 62: 587- 622. Go to original source...
  52. Lewis, L. A. & McCourt, R. M. (2004): Green algae and the origin of land plants. - Am. J. Bot. 91 1535-1556. Go to original source...
  53. Mai, J. C. & Coleman, A.W. (1997): The internal transcribed spacer 2 exhibits a common secondary structure in green algae and flowering plants. - J. Mol. Evol. 44: 258-271. Go to original source...
  54. Mattox, K. R. & Stewart, K. D. (1984): Classification of the green algae: a concept based on comparative cytology. - In: Irvine, D. E. G. & John, D. M. (eds): The Systematics of the Green Algae, 29-72 pp., London, Academic Press, UK.
  55. McCourt R. M., Delwiche, C. F. & Karol, K. G. (2004): Charophyte algae and land plant origins. - Trends Ecol. Evol. 19: 661-666. Go to original source...
  56. McCourt, R. M., Karol, K. G., Bell, J., Helm-Bychowski, K. M., Grajewska, A., Wojciechowski, M. F. & Hoshaw, R. W. (2000): Phylogeny of the conjugating green algae (Zygnemophyceae) based on rbcL sequences.- J. Phycol. 36: 747-758. Go to original source...
  57. McCourt, R. M., Karol, K. G., Kaplan, S. & Hoshaw, R. W. (1995): Using rbcL sequences to test hypotheses of chloroplast and thallus evolution in conjugating green algae (Zygnematales, Charophyceae). - J. Phycol. 31: 989-995. Go to original source...
  58. Mix, M. (1972): Die Feinstruktur der Zellwände bei Mesotaeniaceae und Gonatozygaceae mit einer vergleichenden Betrachtung der verschiedenen Wandtypen der Conjugatophyceae und über deren systematischen Wert. - Arch. Mikrobiol. 81: 197- 220. Go to original source...
  59. Moon, B. & Lee, O.-M. (2003): A phylogenetic significance of several species from genus Cosmarium (Chlorophyta) of Korea based on mitochondrial coxIII gene sequences. - Algae 18: 199-206. Go to original source...
  60. Moon, B. & Lee, O.-M. (2007): Molecular Phylogeny of the genera Staurastrum and Staurodesmus (Zygnematophyceae, Streptophyta) based on nuclear (18S rDNA) and chloroplast gene (atpB) sequences. - Algae 22: 1-10. Go to original source...
  61. Moon, B., Lim, A. S., Ahn, J. H., Park, J. H. & Lee, O-M. (2005): Phylogenetic Study of Genera Staurastrum and Staurodesmus (Zygnemophyceae, Streptophyta) Inferred from atpB Sequences. - Algae 20: 261-270. Go to original source...
  62. Palamar-Mordvintseva, G. M. (1976a): New genera of Desmidiales. - Ukr. Bot. Zhurn. 33: 396-398.
  63. Palamar-Mordvintseva, G. M. (1976b): A taxonomic analysis of the genus Staurastrum Meyen. - Ukr. Bot. Zhurn. 33: 31-38.
  64. Palla, E. (1894): Über eine neue, pyrenoidlose Art und Gattung der Conjugaten. - Ber. Dt. Bot. Ges. 12: 228-236. Go to original source...
  65. Pickett-Heaps, J. D. (1975): Green algae: Structure, reproduction andevolution in selected genera. - 606 pp., Sinauer Associates, Sunderland, MA, USA.
  66. Prescott, G. W. (1948): Desmids. - Bot. Rev. 14: 644-676. Go to original source...
  67. Prescott, G. W., Bicudo, C. E. & Vinyard, W. C. (1982): A synopsis of North American desmids. Part II. Desmidiaceae: Placodermae. Section 4. - 700 pp., University of Nebraska Press, Lincoln, London, USA.
  68. Prescott, G. W., Croasdale, H. T. & Vinyard, W. C. (1972): A synopsis of North American desmids. Part I: Desmidiales: Saccodermae, Mesotaeniaceae. North American Flora Series II(6). - 84 pp., New York Botanical Garden, Bronx, USA.
  69. Prescott, G. W., Croasdale, H. T. & Vinyard, W. C. (1975): A synopsis of North American desmids. Part II: Desmidiaceae: Placodermae. Section 1. - 275 pp., University of Nebraska Press, Lincoln, London, USA.
  70. Prescott, G. W., Croasdale, H. T. & Vinyard, W. C. (1977): A synopsis of North American desmids, Section 2(2). Desmidiaceae, Placodermae. - 413 pp., University of Nebraska Press, Lincoln, London, USA.
  71. Qiu, Y.-L. & Palmer, J. D. (1999): Phylogeny of early land plants: insights from genes and genomes. - Trends Plant Sci. 4: 26-30. Go to original source...
  72. Randhawa, M. S. (1959): Zygnemaceae. - 478 pp., Indian Council of Agriculture Research, New Delhi, India.
  73. Round, F. E. (1971): The taxonomy of the Chlorophyta II. - Brit. Phycol. J. 6: 235-264. Go to original source...
  74. Rù¾ièka, J. (1977): Die Desmidiaceen Mitteleuropas. Band 1, 1 Lieferung. - 291 pp., Schweizer-bart'sche Verlagsbuchhandlung, Stuttgart.
  75. Saldanha, R., Mohr, G., Belfort, M. & Lambowitz, A. M. (1993): Group I and group II introns. - FASEB Journal 7: 15-24. Go to original source...
  76. Shaw, J., Lickey, E. B., Beck, J. T., Farmer, S. S., Liu, W., Miller, J., Siripun, K. C., Winder, C. T., Schilling, E. E. & Small, R.L. (2005): The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. - Amer. J. Bot. 95: 142-166. Go to original source...
  77. Shaw, J., Lickey, E. B., Schilling, E. E. & Small, R. L. (2007): Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. - Amer. J. Bot. 94: 275-288. Go to original source...
  78. Silva, P. C. (1952): A review of nomenclatural conservation in the algae from the point of view of the type method. - University of California. Publications in Botany 25: 381-395.
  79. Silva, P. C. (1980): Names of classes and families of living algae: with special reference to their use in the Index Nominum Genericorum (Plantarum). - Regnum Vegetabile 103: 1-56.
  80. Teiling, E. (1950): Radiation of desmids, its origin and its consequences as regards taxonomy and nomenclature. - Bot. Not. 1950: 299-327.
  81. Teiling, E. (1952): Evolutionary Studies on the shape of the cell and of the. chloroplast in Desmids. - Bot. Not. 3: 264-306.
  82. Transeau, E. N. (1951): The Zygnemataceae. - 327 pp., Ohio State University Press, Columbus, USA.
  83. Turmel, M., Ehara, M., Otis, C. & Lemieux, C. (2002): Phylogenetic relationships among streptophytes as inferred from chloroplast small and large subunit rRNA gene sequences. - J. Phycol. 38: 364-375. Go to original source...
  84. Turmel, M., Otis, C. & Lemieux, C. (2005): The complete chloroplast DNA sequences of the charophycean green algae Staurastrum and Zygnema reveal that the chloroplast genome underwent extensive changes during the evolution of the Zygnematales. - BMC Biology 3: 22. Go to original source...
  85. Turmel, M., Pombert, J. F., Charlebois, P., Otis, C. & Lemieux, C. (2007): The green algal ancestry of land plants as revealed by the chloroplast genome. - Int. J. Plant Sci. 168: 679-689. Go to original source...
  86. Vaucher, J. P. (1803): Histoires des Conferves d'Eaux Douce. - 304 pp., J. J. Paschoud, Geneva, Switzerland.
  87. West, G. S. & Fritsch, F. E. (1927): A treatise on the British freshwater algae. 2nd ed. - 534 pp., Cambridge University Press, Cambridge, UK.
  88. West, W. & West, G. S. (1904): A monograph of the British Desmidiaceae. Vol. 1. - 224 pp., Ray Society, London, UK. Go to original source...
  89. Yamagishi, T. (1963): Classifcation of the Zygnemataceae. - Sci. Rep. Tokyo Kyoiku Daigaku B 11: 191-210.