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Open Access 05.11.2024 | Review Paper

Meta-analysis of spatial genetic patterns among European saproxylic beetles

verfasst von: Rama Sarvani Krovi, Nermeen R. Amer, Maria Oczkowicz, Łukasz Kajtoch

Erschienen in: Biodiversity and Conservation | Ausgabe 1/2025

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Abstract

Der Artikel untersucht die räumlichen genetischen Muster europäischer Saproxylkäfer und untersucht, wie historische Gletscherzyklen und Refugialpopulationen ihre genetische Vielfalt beeinflusst haben. Außerdem werden die Auswirkungen menschlicher Aktivitäten und des Klimawandels auf diese Arten untersucht, wobei die Notwendigkeit wirksamer Schutzstrategien betont wird. Die Metaanalyse bietet Einblicke in die genetische Variabilität zwischen verschiedenen Regionen und Arten und stellt eine wertvolle Grundlage für zukünftige Forschungs- und Managementpraktiken dar.
Hinweise
Communicated by Akihiro Nakamura.

Supplementary Information

The online version contains supplementary material available at https://​doi.​org/​10.​1007/​s10531-024-02940-8.

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Introduction

Forest-dwelling organisms are one of the most diverse groups of terrestrials in the world as many areas are, or at least used to be, covered by trees (Erwin, 1997, Lieutier et al. 2004a, b). The Quaternary history of trees was highly associated with glacial cycles, which forced forests to retreat to tropic zones or refugial areas in higher latitudes (Taberlet et al. 1998). In Europe, such refugia were mostly situated in the Mediterranean Basin (Hewitt et al. 1999; Kerdelhué et al. 2002), although numerous local refugia were also discovered in Western and Central Europe (Stewart et al. 2001). Therefore, these refugial populations (particularly from southernmost regions), usually possess higher genetic polymorphism than populations that expanded to the north and harbour only a subset of original diversity (also decreased by isolation caused by barriers like seas or mountain ranges). There are many examples of trees following this pattern e.g. oaks Quercus spp. (Simeone et al. 2018), or fir Abies alba (Litkowiec et al. 2021). Some of the trees (and associated species) found suitable areas for ice-age survival in the eastern part of Europe or Asia. These boreal or boreo-montane species should have a higher genetic polymorphism in easternmost populations. However, most of them are quite uniform over a whole range because when expanding to the west, species were not restricted by barriers like in the case of expansion from the south. Species that follow this pattern are e.g. spruce Picea abies (Tóth et al. 2017) or birches Betula spp. (Maliouchenko et al. 2007). Consequently, the phylogeography of European trees and arboreal taxa is highly diverse, and apart from major patterns (following paradigms of other temperate species), there are many exceptions (Stewart et al. 2010; Taberlet et al.1998;).
This ecosystem was next modified by humans, who found wood a vital resource (e.g. as fuel, or for constructions) (Freer-Smith et al. 2019), or who removed trees to transform land for other uses (agriculture, settlement etc.) (Taylor et al. 2009). Changes in woodland cover and forest quality caused by human activity since antiquity to industrial times forced many tree-living species to change their ranges and abundance, or caused extinction (Ulrich 1995). Among species living in forests, the crucial group constitutes taxa utilizing wood as a microhabitat for living and/or foraging (Hoffman et al. 2000; Hjältén et al. 2012). Many of these species depend on the amount and quality of wood from dead trees (colloquially "deadwood"). This is a natural element in forest ecosystems (Siitonen 2001), but is rare in the case of managed (commercial) forests, where wood production is a major activity. Consequently, many organisms that depend on the so-called deadwood, cannot survive in planted and logged forests, so their populations in such forests are scattered and small (Freedman et al. 1996). This is not a rule, as some organisms adapt to such heavily transformed habitats and start to be abundant, which sometimes leads to their outbreaks having an impact on the economic value of forests (Klapwijk et al. 2016). The decline of populations of rare species and the outbreak of common ones are now accelerated by climate changes, which have a serious impact also on forests all over the world (Bauhus et al. 2017).
Beetles (Coleoptera) are likely the best-known group of saproxylic organisms, at least in temperate and boreal forests in the Northern Hemisphere (Gimmel et al. 2018). Generally, beetles are the most diverse group of animals (insects) in the world and many of them are associated with forests, with numerous taxa living in various forms of dying and dead trees (Gimmel & Ferro 2018; Ślipiński et al. 2011). So-called beetle “pests'' are objects of numerous studies all over the world, with the greatest focus on taxa having economic value for coniferous forests in the Holarctic (De Groot et al. 2019). On the other hand, attention to rare and threatened taxa is also increasing for European taxa, especially thanks to the development of red lists of saproxylic beetles (Carpaneto et al. 2015). The overall knowledge is also unbalanced as most available information is related to biogeography (distribution), and ecology (habitat/microhabitat requirements, trophism). Data about genetic polymorphism of saproxylic beetles is even weaker as not much research was done on members of this group (Kajtoch et al. 2022). The exceptions are “pests'' and invasive taxa, which were relatively frequent objects of genetic studies, but usually phylogenetic or delimitation for some groups, e.g. bark beetles (Kajtoch et al. 2022). Genetic data about the majority of common species are still unknown. Genetic studies on rare and threatened beetles are limited and typically focus on only a few charismatic species. Kajtoch et al. (2022) provided a comprehensive review of the genetic diversity of saproxylic beetles worldwide. However, the review was too general to address numerous questions adequately, revealing more unexplored areas ("white spots"). Overall, it suggested that glacial and post-glacial range shifts primarily shaped genetic variability in saproxylic beetle populations. Additionally, certain species appeared to be linked to habitat quality and quantity which is important for forest c.onservation or management strategies.
The general idea of this review is to summarize the knowledge on genetic polymorphism of saproxylic beetles being studied in Europe to give a background for effective planning of conservation (for rare and threatened taxa), or management (for taxa having economic value in wood production). This review and meta-analysis will serve as a background for future studies on the genetic variability of saproxylic beetles.
To address the hypothesis that genetic diversity in saproxylic beetle populations decreases toward the north, similar to other wood-dwelling species in Europe, a comprehensive literature search was conducted. It was also hypothesized that boreal species would show higher genetic polymorphism in eastern populations, which have been less impacted by glacial events. Additionally, populations at higher altitudes were expected to have greater polymorphism due to the relatively undisturbed quality of mountain forests.
Moreover, it was anticipated that rare taxa would exhibit lower overall genetic polymorphism compared to pest species, as the latter are less affected by forest management practices. Finally, we compared the number and distribution of genetic units (mitochondrial clades or microsatellite clusters) among species to identify patterns, such as the presence of distinct genetic units in various regions of Europe, that could have implications for conservation or management strategies.

Methods

The literature search was conducted according to PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) guidelines in the WoS (Web of Science) and Scopus databases. The search was done exactly as in a review by Kajtoch et al. (2022) but extended to recent publications (2022–2023, till 31.12.2023). The same criteria were adopted to newest paper search with use of the same keywords: (ALL = (Phylogeny OR phylogenetic OR phylogeography OR phylogeographic OR population genetic OR conservation genetic OR landscape genetic OR population genomic OR conservation genomic OR landscape genomic) ALL = (AND beetle OR Coleoptera AND saproxylic OR xylophagic OR saproxylophagic OR cambiophagic OR cambioxylophagic OR xylophagous OR saproxylophagous OR cambiophagous OR cambioxylophagous OR deadwood)). All relevant papers were retrieved according to the following criteria: i) concern species from Europe, ii) available data for numerous sites across the continent with georeferences, iii) available genetic polymorphism metrics (haplotype diversity (Hd) based on mitochondrial DNA markers, and/or heterozygosity (Ho) based on microsatellites). Heterozygosity (observed heterozygosity) was selected as more articles reported this metric than allelic richness (moreover allelic richness is more dependent on sample size). The same was true for haplotype diversity being more frequently available in articles than nucleotide diversity. Due to very few studies based on the genomic data (from next-generation sequencing) (Schebeck et al. 2018, 2019; Mykhailenko et al. (in press)), in this review, we refrained from presenting genetic metrics measured from single nucleotide polymorphisms.

Geographic assignment of populations

Initially, we planned to analyze intraspecific variability in particular populations or their groups in Europe separately, but due to the large differences in several data sets (examined sites), the analysis was restricted to a species level. For some species with available mitochondrial or microsatellite data showing overall intraspecific diversity in Europe, the general picture of genetic population structure (number and distribution of clades or clusters) was presented. The same was done for the presence of identified refugia across defined regions of Europe and adjacent areas, namely: Scandinavian (Norway, Sweden, Denmark, Finland), North-Western (Ireland, Britain), Western (Benelux, lowland France, and Germany), Iberian (Portugal, Spain), Apennines (S Italy), Balkans (Balkan Peninsula), Alpine (Switzerland, Austria, Slovenia, S Germany, N Italy, SE France), Pannonian-Carpathian-Bohemian (Czech R., Slovakia, S Poland, SE Ukraine, inner Romania, Hungary), Pontic (E Romania, Moldova, S Ukraine, SW Russia), North-Eastern (N Poland, Baltic countries,), Eastern (W, N, central Russia Belarus), Caucasus (Georgia, Armenia, Azerbaijan, SE Russia), and Anatolia (Turkey).
The main challenge was the inconsistency in sampling design across different studies. Sample sizes varied widely, ranging from a few individuals to thousands, and the number of sampled individuals per site was often inconsistent, typically ranging from a few to a dozen. This imbalance was unavoidable, as many papers lacked precise information on the number of individuals sampled per site or population. Additionally, some studies did not clearly define whether a sampling site referred to a specific location or a population within a broader area, further complicating data comparisons. Moreover, sampling only covered a portion of each species' range. Species distribution range percentages were calculated separately for haplotype diversity and heterozygosity using QGIS by dividing the sampled area of each species by the overall distribution range, with data from the Global Biodiversity Information Facility (GBIF) and selected publications (Table 1). The analysis revealed that only 30–50% of each beetle species' range was included in studies, resulting in a similar bias level across all species with available genetic and geographic data. Despite these imbalances, the review and meta-analysis relied on the best available published information.
Table 1
Species considered for the purpose of this review and the conservation status. Studies were taken between the years 2000 and 2023
Family
Species
Reference
Genetic marker examined
Data used
conservation status & protection
considered as pest
Scarabeidae
Cetonia aurata
Ahrens et al. (2013)
mtDNA
general phylogeography
not threatened—not protected
no
Scarabeidae
Osmoderma spp.
Audisio et al. (2009), Landvik et al. (2017)
mtDNA
general phylogeography
vulnerable—protected
no
Scarabeidae
Oxythyrea spp.
Vondracek et al. (2023)
mtDNA
general phylogeography
not threatened—not protected
no
Scarabeidae
Protaetia cuprea
Vondráček et al. (2018)
mtDNA
general phylogeography & genetic diversity meta-analysis
not threatened—not protected
no
Tenebrionidae
Bolitophagus reticulatus
Eberle et al. (2021)
mtDNA, microsatellite
general phylogeography & genetic diversity meta-analysis
not threatened—not protected
no
Lucainidae
Lucanus cervus
Cox et al. (2019), Solano et al. (2016)
mtDNA, microsatellite
general phylogeography & genetic diversity meta-analysis
near threatened—protected
no
Cerambycidae
Rhagium inquisitor
Cakmak et al. (2020)
mtDNA
general phylogeography
not threatened—not protected
sometimes
Cerambycidae
Rosalia alpina
Drag et al. (2015, 2016), Molfini et al. (2018)
mtDNA, microsatellite
general phylogeography & genetic diversity meta-analysis
endangered—protected
no
Cerambycidae
Monochamus galloprovincialis
Haran et al. (2018)
microsatellite
general phylogeography & genetic diversity meta-analysis
not threatened—not protected
yes
Cerambycidae
Monochamus sartor
Plewa et al. (2018)
mtDNA, microsatellite
general phylogeography
not threatened—not protected
no
Cerambycidae
Morimus asper
Gojkovic et al. (2022)
mtDNA
general phylogeography
not threatened—not protected
no
Cerambycidae
Morimus funereus
Solano et al. (2013)
mtDNA
general phylogeography
not threatened—not protected
no
Cerambycidae
Anastrangalia spp.
Zamoroka et al. (2019)
mtDNA
general phylogeography
not threatened—not protected
no
Cucujidae
Cucujus cinnaberinus
Sikora et al. (2023b)
mtDNA, microsatellite
general phylogeography & genetic diversity meta-analysis
vulnerable—protected
no
Pythidae
Pytho kolwensis
Painter et al. (2007)
mtDNA
general phylogeography
vulnerable—protected
no
Pythidae
Pytho depressus
Painter et al. (2007)
mtDNA
general phylogeography
not threatened—not protected
no
Pythidae
Pytho abieticola
Painter et al. (2007)
mtDNA
general phylogeography
not threatened—not protected
no
Curculionidae
Dendroctonus micans
Mayer et al. (2015)
mtDNA
   
 
general phylogeography
not threatened—not protected
yes
   
Curculionidae
Ips sexdentatus
Avtzis et al. (2019)
mtDNA
general phylogeography
not threatened—not protected
yes
Curculionidae
Ips typographus
Bertheau et al. (2013), Mayer et al. (2014, 2015), Stauffer et al. (1999), Sallé et al. (2007),
mtDNA, microsatellite
general phylogeography & genetic diversity meta-analysis
not threatened—not protected
yes
Curculionidae
Pityogenes chalcographus
Bertheau et al. (2013), Faccoli et al. (2005), Schebeck et al. (2018, 2019)
mtDNA
Gen eral phylogeography & genetic diversity meta-analysis
not threatened—not protected
yes
Curculionidae
Tomicus destruens
Vasconcelos et al. (2006), Kerdelhue et al. (2002)
mtDNA
general phylogeography & genetic diversity meta-analysis
not threatened—not protected
yes
Curculionidae
Tomicus pinniperda
Horn et al. (2009), Kerdelhue et al. (2002), Ritzerow et al. (2004)
mtDNA
general phylogeography & genetic diversity meta-analysis
not threatened—not protected
yes

Statistical analyses

All statistical analyses were implemented using R (R Core Team 2020, R Studio Team 2015, Wickham, 2016). For genetic diversity (Hd and Ho), we ran separate models for Hd and Ho with species, longitude, latitude, and altitudes and their interactions as predictors. Subsequently, separate models for each saproxylic species separately were performed with longitude, latitude, and altitude as predictors. All models were performed using a generalized linear model (glm function) and Gaussian distribution. P-values were obtained using ANOVA implemented in the car package (Fox and Weisberg 2015). Selection of the best model was made based on the corrected Akaike’s information criteria for sample size (AICc) and weights. Then, we ran a specific model based on the output of the model selection analysis. In case AICc returns “Null model”, we chose the next best model with delta AIC < 2. Relationships between geographical dimensions (longitude, latitude, and altitude) with haplotype diversity or heterozygosity were assessed using linear associations (Pearson, 1896). All boxplots and scatterplots were incorporated using (ggplot2) for visualization. All maps were conducted using QGIS software (version: 3.36.3, 2019).

Results

The output for our literature search resulted in 1734 publications among which 167 included papers referring to the genetics of European saproxylic beetles but only 44 included phylogeographic or population genetic information. After selection, 14 publications were used for meta-analysis and a further 32 papers were used for descriptive examination (Table S1). Data preprocessing involved removing duplicates, handling missing values, and verifying location coordinates' accuracy along with generating altitudes from the coordinates provided in the studies (Table S2).
The goals of these studies were mostly focused on phylogeography, population genetics or conservation genetics, and evolutionary or delimitation (with barcoding) topics were included. Noticeably, no research included environmental data (e.g. forest structure, continuity, or quality).

General overview

Thirty-three species of saproxylic beetles were considered for this review. Information on genetic diversity data was available for 10 species (eight with mitochondrial data and five with microsatellites). Moreover, for all 33 taxa general phylogeographic and/or population genetic information were available, which were used for descriptive elaboration of beetle history and distribution of evolutionary units. Among selected beetles were both threatened species (Osmoderma spp., Rosalia alpina, Lucanus cervus, Morimus funereus, Cucujus cinnaberinus, Pytho kolwensis), and common taxa, either of economic value (e.g. Dendroctonus micans, Ips typographus, Ips sexdentatus, Pityogenes chalcographus, Tomicus destruens, Tomicus piniperda, Monochamus galloprovincialis), or considered neutral in forestry (e.g. Cetonia aurata, Oxythyrea spp., Protaetia cuprea, Bolitophagus reticulatus, Rhagium inquisitor, Monochamus sartor, Morimus asper, Anastrangalia spp., Pytho depressus, Pytho abieticola) (Table 1).

Genetic diversity and sampling sites distribution

Haplotype diversity was available for 12 beetle species. However, for four species, the number of independent sites was too low for any analyses (namely: Monochamus sartor, Monochamus galloprovincialis (Cerambycidae; Plewa et al. 2018a; Vondracek et al. 2018), and Osmoderma barnabita (Scarabaeidae; Melosik et al. 2020). For Bolitophagus reticulatus (Eberle et al. 2021) information about haplotype diversities was provided for groups of populations from a given country, therefore it was not possible to use these data in most analyses. Two pairs of sibling species: Tomicus piniperda and T. destruens (Curculionidae; Kerdelhué et al. 2002), were formerly considered as one, and belong to the species complex. The final list of examined species for haplotype diversities included nine taxa, these are: Lucanus cervus (Lucanidae; Solano et al. 2016), Rosalia alpina (Cerambycidae; Drag et al. 2018), Cucujus cinnaberinus (Cucujidae; Sikora et al. 2023a), Protaetia cuprea (Scarabaeidae; Vondráček et al. 2018), Monochamus sartor (Cerambycidae; Plewa et al. 2018b), Ips typographus (Curculionidae; Stauffer et al. 1999), Pityogenes chalcographus (Curculionidae; Schebeck et al. 2018), Tomicus destruens and T. piniperda (Curculionidae; Faccoli et al. 2005) (Fig. 1, Table 1, Table S3).
Among the identified articles that met the criteria presented above, only five taxa were available with heterozygosity values from many sites: Lucanus cervus (Lucanidae; Solano et al. 2023), Bolitophagus reticulatus (Eberle et al. 2021), Rosalia alpina (Cerambycidae; Drag et al. 2018), Monochamus galloprovincialis (Cerambycidae; Haran et al. 2018), and Cucujus cinnaberinus (Cucujidae; Sikora et al. 2023a) (Fig. 1, Table 1, Table S3).
The significant effect of species, latitude, longitude, altitude, and their interactions on genetic diversity (Hd and Ho) were tested. First, model selection analysis (AIC) was done to keep only the most relevant variables (Table 2, Table S4). The results showed a significant effect of the main variables of species, latitudes, and altitudes on haplotype diversity, and significant effects of species and altitudes along with their interaction in heterozygosity, revealing the leading influence of geographical distribution on genetic diversity, with the highest impact on haplotype diversity (Table 2, Table S4).
Table 2
Effects of species, latitude, longitude, and altitude on haplotype diversity (Hd) and heterozygosity (Ho). The analyses were limited to the relevant predictors and interactions determined by the model selection analysis (***p < 0.001; **p < 0.01; *p < 0.05)
Predictor
df
LR Chi2
Pr(> Chi2)
Haplotype diversity data
Species
8
57.238
 < 0.001***
Latitude
1
14.923
 < 0.001***
Altitude
1
8.559
0.003**
Heterozygosity data
Species
4
63.501
 < 0.001***
Altitude
1
0.587
0.443
Species:Altitude
4
9.928
0.041*
Although geographical distribution showed strong significant effects on genetic diversity, the geographical influences of altitude, latitude, and longitude differed between species (Fig. 2, Table 3).
Table 3
Effects of latitude, longitude, and altitude on haplotype diversity and heterozygosity on each species separately
Predictor
df
F-value
p-value
Predictor
df
F-value
p-value
Haplotype diversity
Heterozygosity
Lucanus cervus
Lucanus cervus
Latitude
1
4.773
0.039*
Latitude
1
4.746
0.040*
Longitude
1
15.842
0.002***
Longitude
1
10.855
0.003**
Rosalia alpina
Altitude
1
2.303
0.143
Latitude
1
4.035
0.055
Longitude:Altitude
1
48.425
 < 0.001***
Longitude
1
10.661
0.003**
Monochamus galloprovincialis
Altitude
1
8.167
0.008**
Latitude
1
3.757
0.060*
Latitude:Altitude
1
6.819
0.014*
Longitude
1
12.042
0.001**
Long: Altitude
1
7.333
0.011*
Altitude
1
4.129
0.049*
Latitude:Longitude
1
14.010
< 0.001***
Latitude:Altitude
1
3.633
0.064
Cucujus cinnaberinus
Longitude: Altitude
1
4.505
0.040*
Altitude
1
11.659
0.001**
Latitude:Longitude
1
11.549
0.002**
Protaetia cuprea
Cucujus cinnaberinus
Altitude
1
3.916
0.088
Altitude
1
5.825
0.021*
Tomicus piniperda
 
Latitude
1
16.152
 < 0.001***
Longitude
1
6.686
0.009**
Latitude: Longitude
1
7.037
0.007**
Tomicus destruens
Altitude
1
3.791
0.065
Pityogenes chalcographus
Altitude
1
8.799
0.017*
The analyses were limited to the relevant predictors and interactions determined by the model selection analysis (***p < 0.001; **p < 0.01; *p < 0.05)
In haplotype diversity, R. alpina expressed the lowest diversity values with strong significant effects of the geographical distribution of latitude, longitude, and altitude, in contrast to P. cuprea which showed the highest diversity values with a weak significant trend of altitude (Fig. 2, Table 3, Table S5). Geographical distribution had no significant effect on Ips typographus (Table S5).
In heterozygosity, M. galloprovincialis and R. alpina showed the lowest diversity values with the more significant geographical effects on M. galloprovincialis in contrast to B. reticulatus, C. cinnaberinus, and L.cervus which showed the highest diversity values (Fig. 2, Table 3), however, geographical distribution has no significant effect on B. reticulatus and Rosalia alpina (Table 3, Table S6).

Correlation with geographic dimensions

The correlation scatter plots revealed varying patterns between species, with some exhibiting strong correlations between latitude with Hd, and altitude with Hd and Ho, while others showed no discernible trends.
Along latitude, the following species expressed a decrease of haplotype diversity to the north: L. cervus, R. alpina, C. cinnaberinus, I. typographus, P. chalcographus, and T. piniperda-destruens, although this trend was not significant for all bark beetles (Fig. 3, Fig. S1, S2). In heterozygosity, three species expressed a decrease in diversity values to the north, although significant only in the case of L. cervus. B. reticulatus and R. alpina have similar heterozygosity along latitude (Fig. 4, Fig. S1, S2). Along longitude, L. cervus and R. alpina showed a decrease in haplotype diversity to the west, whereas I. typographus, P. chalcographus, and T. pinniperda have opposite trends, although significant only for T. pinniperda (Fig. 3, Fig. S1, S2). However, for heterozygosity, results revealed either an insignificant decrease or increase in diversity values to the west in R. alpina (Fig. 4, Fig. S1, S2).
With increasing altitude only one species showed a decrease in haplotype diversity, which was P. cuprea. L. cervus, C. cinnaberinus, R. alpina, T. piniperda-destruens and P. chalcographus showed a significant positive correlation for altitude (Fig. 3, Fig. S1, S2). For heterozygosity, L. cervus and C. cinnaberinus showed a significant positive correlation with altitude, and M. galloprovicialis showed the same trend although not significant (Fig. 4, Fig. S1, S2).

Genetic units

Information about population structure with the presence of distinct genetic units (clades) was available for 10 species and 7 species complexes.

Mitochondrial DNA

The largest number of these taxa have genetic information from following regions: Alpine (18), Balkans (16), Appennines (15), Scandinavia (15), Pannonian-Carpathian-Bohemian (13), Western (12), Eastern (11), North-Western (11), North-Eastern (9), Iberian (9), Anatolian (8), Pontic (6), and Caucasus (3) (Fig. 5a).
The highest number of evolutionary units was found in the Balkans (42 for 16 species), followed by Apennines (34 for 15 species) and Alpine (34 for 18 species). The lower number of clades was found in Pannonia-Carpathians-Bohemia (25 for 13 species), Scandinavia (24 for 15 species), Western (21 for 13 species), followed by Eastern (17 for 12 species), North-Eastern (16 for 9 species), North-Western (13 for 11 species), and Anatolia (11 for 8 species). The lowest number of clades was found in Iberia (11 for 9 species), Pontic (7 for 6 species), and Caucasus (3 for 3 species) (Fig. 5a).
Regarding unique evolutionary units (present in only one region), the most diverse occurred to be both Balkans (16 for 8 species) and Apennines (16 for 9 species), followed by Anatolia (7 for 5 species), Iberia (7 for 3 species), North-Eastern (4 for 1 species), Eastern (3 for 1 species). Single unique clades were found in Alpine, Pontic, and Caucasus (Fig. 5c).

Microsatellites

The largest number of these taxa have genetic information from the following regions: Western, Apennines, Balkans, Alpine, and Carpathian (6 in each), followed by Scandinavian (5), North-Western, North-Eastern, Eastern (4 in each), Iberian and Pontic (3 in each), and Caucasus (1). No data was available for Anatolia (Fig. 5b).
The highest number of genetic clusters was found in the Balkans (15 for 6 species), followed by Alpine (14 for 6 species), Pannonia-Carpathians-Bohemia (13 for 6 species), Western (12 for 6 species), North-Western (11 for 4 species), Apennines (10 for 6 species), Scandinavia (9 for 5 species), North-Eastern (7 for 4 species), Eastern (5 for 4 species), Iberian (5 for 3 species), Pontic (4 for 4 species) and Caucasus (3 for 1 species) (Fig. 5b).
Regarding unique clusters (present in only one region), the only cases reported were from the Balkans (2 for 2 species), Apennines (2 for 2 species), Iberia (1), and Western (1) (Fig. 5d).

Refugia

Regarding mtDNA, in the Balkans, there were identified 30 such refugia (for 16 species, in some taxa more than one), followed by Apennines (21 for 15 species). In Iberia we found 8 refugia (for 7 species in each), in Anatolia 7 refugia (for 8 species), and in Eastern 6 such areas (for 6 species). In Alpine, Caucasus and Pontic there were 2 refugia (for 2 species in each), and single ones in Pannonia-Carpathians-Bohemia and North-Eastern, whereas there were no refugia detected in Scandinavian, North-Western, and Western (Fig. 5c).
Regarding microsatellites, in the Balkans we identified 7 such refugia (for 6 species, in some taxa more than one), followed by Apennines (6 for 5 species), and Eastern (3 for 3 species). In the Alps and Iberia we identified 2 refugia (for 2 species in both), and a single refuge in Pontic and Western (Fig. 5d).

Discussion

Saproxylic beetles inhabiting European forests belong to various taxonomic units and trophic guilds. They have very diverse population structures and dynamics and are known to be either susceptible to forest management, or conversely, some benefit from forest transformation for wood production (Kozak et al. 2021). The common factor for all saproxylic beetles is their association with the wood of dying or dead trees (some of them are responsible for killing trees, whereas the majority utilize deadwood in various stages of decay) (Grove et al. 2002). Considering all these differences we expect that their genetic diversity is varied. Indeed, this summary of available genetic data for saproxylic European beetles revealed diverse patterns, however there were also surprisingly many congruences, mostly caused by a past history of wood-dwelling habit (Pleistocene and Holocene).

To the north

Determination of higher genetic diversity for south-European populations of the majority of saproxylic beetles is rather an obvious result considering the history of forest-dwelling species since glacial times (Hewitt et al. 1999; Hagge et al. 2019; Taberlet et al. 1998). This concerns mostly taxa associated with deciduous trees which were forced to retreat to the Mediterranean Basin during the Pleistocene and spread to the north during climate warming in the Holocene (Jalut et al. 2009). Not only is the higher genetic diversity observed in southern populations consistent with this pattern, but the presence of distinct clades or clusters and identified refugial areas in Mediterranean peninsulas further supports it. The Balkans have historically served as refugia for many saproxylic beetles, a role that continues to be prominent today (Taberlet et al.1998). Also, the Apennines played a substantial role in sheltering populations of wood-dwelling beetles during glaciations, although the Alps formed a barrier in the expansion of some of them to the north (Drag et al. 2018). Other areas acting as refugees, but on a lower scale, were Anatolia, Iberia, and Eastern Europe (Bilgin et al. 2011; Varga et al. 2009). This begs the question, could the fewer identified clades and refugia in areas such as Eastern Europe be attributed to limited genetic data available for these regions, or possibly to the extinction of local populations? This discrepancy may also be influenced by historical factors, such as extensive deforestation in regions like Iberia (García-Ruiz et al. 2016). Additionally, the absence of a clear south-north pattern in these areas contrasts with taxa originating from the east, particularly those inhabiting the boreal zone with isolated populations in European mountains (Varga et al. 2008). Unfortunately, some of the observed patterns could be biased due to insufficient data in available published research.

East-to-west gradient in forest management

South to north decrease of genetic diversity in saproxylic beetles is not the only geographic pattern that can be observed. Relatively many wood-dwelling Coleoptera also express decreased genetic diversity toward their western populations. It is not the rule, as not all saproxylic beetles have ranges covering eastern Europe—this particularly concerns species associated with temperate deciduous trees having ranges not exceeding Central Europe. Surprisingly many taxa express higher genetic diversity in their central, eastern and south-eastern—European populations. One of the reasons for this pattern could be the presence of beetles belonging to various evolutionary units in this part of Europe as a result of contact between populations having refugia in the south-west and south-east Europe (a phenomenon commonly reported in European biogeography, (Hewitt et al. (2011). This is likely true for various tenebrionid beetles (Fattorini et al. 2012). Another explanation is that beetle populations in eastern and southeastern Europe are in better condition, being more widespread, abundant, and vital, due to inhabiting higher-quality forests (Karpinski et al. 2021). These forests are either natural or closely resemble natural forests, with a substantial amount of dead wood available (Reif and Walentowski, 2008). Indeed, this part of Europe is known for remnants of primeval forests, such as the Białowieża and Pripyat forests in the lowlands, and the Carpathians and the Balkans in the mountains. Additionally, forest management in eastern and southeastern Europe is generally less intensive than in western, southern, and northern Europe (Angelstam et al. 2011). There are known exceptions like dehesas in the Iberian Peninsula (Ferraz-de-Oliveira et al. 2016), but these are woodlands scattered over agricultural landscapes, and many European saproxylic beetles are not present there. Although there are forests in eastern and southeastern Europe that are planted and heavily logged, many areas are still covered by semi-natural mixed forests that support rich populations of various species, including saproxylic beetles. While remnants of such semi-natural forests also exist in western and southern Europe, they are mostly confined to small, highly isolated mountainous areas. The fragmentation and isolation of these natural, heterogeneous, and mixed forests likely contribute to the generally lower diversity of saproxylic beetle populations in western and southern Europe. Timber logging in these regions is extensive and most forests in these regions are artificially planted, resulting in a significant deficiency of dead wood, as it is actively removed from commercial forests (Frank et al. 2009; Horák & Rébl, 2013; Karpinski et al. 2021). The lack of significant genetic diversity observed in some species may be due to sampling biases, as the sampling effort was much more concentrated in western and southern Europe compared to the easternmost regions of their ranges. In C. cinnaberinus, heterozygosity showed no significant correlation with longitude, likely due to the inclusion of a distant Russian population with no or less polymorphism (Sikora et al. 2023a).

Higher is better

Beetle populations sampled at higher altitudes exhibited increased genetic diversity. This increased diversity is likely related to three factors: i) history (phylogeography), ii) altitudinal distribution of species in various regions, and iii) current conditions of forests. The first explanation corresponds to the high diversity of mountain populations in the Mediterranean peninsulas, where refugial populations exist, such as in the Apennines and the Balkans (Karpinski et al. 2021). Indeed, for many saproxylic species, the highest genetic diversity of populations was observed in south-European mountains or the Alps, where species spread after ice-sheet retreated and where evolutionary lineages expanded from southernmost refugia. The altitudinal distribution of species is different in various regions of Europe, and southern areas many saproxylic beetles live on higher elevations simply because forests are distributed higher there (lowland forests in the Mediterranean were cut in ancient times). On the other hand, this pattern was not entirely expected since populations at higher altitudes must endure more challenging conditions, particularly climatic, than those living in lowlands. Such conditions could produce bottlenecks that typically reduce intrapopulation genetic diversity. Here, altitude probably acts more than the past history of populations. The dead wood, a crucial microhabitat for saproxylic beetles, is typically absent except in areas inaccessible to logging. Higher altitudes are usually less affected by forest management due to harsh topography, and numerous protected areas designed in mountain ranges. Some of the most diverse beetle populations have been observed in regions such as the Carpathians and the Dinaric Mountains, although these are outside of the major refugia for forest-dwelling species in Europe (Lassauce et al. 2011). Again, these trends along elevation could be biased by unequal sampling or by low accuracy of determination of sampling sites in examined publications (too low resolution of coordinates).

Rare vs common

One of the assumptions was that rare, threatened species have overall lower genetic diversity due to the isolation of their populations caused by forest fragmentation and lack of essential microhabitats such as deadwood, in commercial forests (De Groot et al. 2019). The genetic diversity of common species is generally assumed to remain unaffected by forest management. However, a comparison of available data reveals that this is not always the case, and no consistent patterns emerge among saproxylic beetle species (Edelmann et al. 2023). These differences could be explained by various histories of species formation and expansion, but also by recent global climatic and environmental changes that also affect common taxa (known decline of invertebrates, Rhodes 2019).
There are instances where rare species exhibit lower genetic diversity compared to most other taxa. This is particularly evident in species associated with specific tree species and habitats, such as Lucanus cervus, Cerambyx cerdo, and Osmoderma spp., which depend on old oaks, and Rosalia alpina, which is linked to old beeches, especially at the edges of their distribution ranges (Seibold et al. 2015). In contrast, Cucujus cinnaberinus, despite also being rare, has high genetic diversity. This species inhabits the bark of various tree species, likely enhancing its dispersal abilities (Vrezec et al. 2017). Common beetles typically exhibit relatively high genetic diversity, which reflects their widespread distribution and numerous populations, primarily in commercial forests such as pine or spruce woods. However, there are exceptions to this pattern. For instance, Ips typographus shows relatively low genetic variability within its populations. This species is known for undergoing cyclic outbreaks followed by population collapses, which tend to reduce its overall genetic diversity (Valeria et al., 2016). It is known that some species with large distribution ranges show less genetic diversity, possibly because their greater dispersal ability promotes greater genetic homogeneity. Such a species usually have high mobility which results in intensive gene flow and lack of geographic structure of their populations.

Convergences with other forest-dwellers

The patterns discussed above are also evident in other wood-inhabiting organisms. Among the best-known arboreal animals are woodpeckers (Picidae), whose European members display similar patterns to those of saproxylic beetles which are their primary prey (Fayt et al 2005). Generalist species like the great-spotted woodpecker (Dendrocopos major) and green woodpecker (Picus canus) exhibit high genetic diversity, but this diversity is unstructured across their European ranges (Myczko et al. 2014). In contrast, distinct evolutionary units in central and east Asia are likely separate species (Perktaş & Quintero 2013). Similarly, the Iberian woodpecker (P. sharpei) was previously considered a subspecies of the green woodpecker (Pons et al. 2011). This unstructured genetic diversity pattern is not observed in saproxylic beetles but may be present in other common, widespread generalist species yet to be examined. Rare specialists associated with deciduous trees, such as the white-backed woodpecker (Dendrocopos leucotos) (Pons et al. 2021) and the middle-spotted woodpecker (Dendrocoptes medius) (Kamp et al. 2019; Schweizer et al. 2022), have distinct subspecies in their Mediterranean and Middle Eastern ranges, differing from their widespread European mainland counterparts. This pattern is shared with saproxylic beetles like Rosalia alpina and Osmoderma spp. (Chiari et al. 2013) The three-toed woodpecker (Picoides tridactylus) shows the least genetic diversity (Zink et al. 2002), mirroring the genetic patterns of its prey, the bark beetle (I. typographus) (Stauffer et al. 1999).
A similar example is found in fungi associated with deadwood, such as the wood decay fungus Fomitopsis pinicola or Gloeoporus taxicola, which shows similar population structure and genetic diversity across different geographical areas (Högberg et al. 1999; Liu et al. 2021). Bolitophagus reticulatus shows similarities in the genetic diversification of populations with its host fungi Fomes fomentarius (Peintner et al. 2019). These similarities are expected, as it has been previously noted that beetles and fungi exhibit many congruences in their taxonomic, functional, and phylogenetic diversities (Thorn et al. 2018). Likely the same similarities could be expected for other saproxylic organisms like moths (Jaworski 2018) or lichens (Rinas et al. 2023), but so far there is a deficiency of phylogeographic and population genetic studies on other deadwood-dwelling species.

Implications for conservation or management

In addition to expanding our understanding of historical range changes and contemporary population variability of saproxylic beetles, genetic information about these species as shown here could have significant practical applications. Knowledge of the genetic diversity of “pests” can inform effective management strategies for their populations. This is especially relevant for understanding the causes, mechanisms, and biological consequences of outbreaks, which are cyclic events in the life cycles of economically important species such as bark beetles and certain longhorn or jewel beetles (Valeria et al., 2016; Haack et al. 2010; Kiran et al. 2019). Indeed, ongoing research in this area has shown promising results (https://​genomicsofoutbre​aks.​com/​).
Large-scale genomic data can also be used to trace the ancestral populations of invasive beetles and to identify species that are morphologically similar but genetically distinct (Cui et al. 2022). Such research has already been conducted for some saproxylic beetles that are invasive in Europe or for European species that have invaded other regions of the world (Wondafrash et al. 2016). Additionally, genetics could aid in the biological control of pest populations by identifying the microbial, biological or chemical factors that can sustainably reduce their numbers (Elnahal et al. 2022).
The most commonly used designation to study the genetics of rare and threatened taxa is by studying the distribution of distinct evolutionary units of conservation value, such as evolutionarily significant units (ESUs) (Casacci et al. 2014) and management units (MUs) (Moritz 1994). An ESU is a population of organisms that is considered distinct for purposes of conservation, it needs to be geographically isolated, express substantial reduction in gene flow with other ESUs and usually possess some distinct phenotypic traits. MU is central to the management of natural populations and is crucial for monitoring the effects of human activity on species abundance. ESUs and MUs are essential for identifying populations that require special protection, particularly those that must be preserved to maintain a substantial part of genetic diversity and potentially important adaptive characteristics vital for the survival of populations (Fraser et al. 2001; Moritz et al. 1994). Additionally, understanding gene flow among populations is important for planning the spatial organization of protected forest sites to sustain connectivity among beetle populations (Balkenhol et al. 2017). Knowing the genetic assignment of individuals to populations is necessary for translocations or reintroductions to avoid outbreeding or inbreeding depression in newly established populations (Maschinski et al. 2013).
Apart from species of economic or conservation value, the majority of saproxylic beetles are natural elements of forest ecosystems, playing crucial roles in carbon and nutrient cycling through their participation in the decay of deadwood (Lieutier et al. 2004a, b). Genetics can also be utilized in this context, for instance, to understand which environmental and spatial factors are responsible for sustaining genetic intra- and inter-population diversity. Tools such as landscape genetics are applicable here, although their use for saproxylic beetles in Europe is still relatively new (Bolliger et al. 2010; Manel et al. 2003).

Prospects and perspectives

The current study serves as a stepping stone for further studies that could potentially employ next-generation sequencing (NGS) technologies like restriction site-associated DNA sequencing or genotyping-by-sequencing (Elshire et al. 2011; Narum et al. 2013; Peterson et al. 2012) to study saproxylic beetles based on large datasets of genomic information (e.g. sets of single nucleotide polymorphisms) and at a larger scale, shedding light on their evolutionary history, adaptation mechanisms, and responses to environmental changes.
Next-generation sequencing (NGS) is already a widely used tool for determining cryptic taxa, including their larvae or pupae, and for delimiting undiscovered evolutionary units (including new taxa) through barcoding (Pante et al. 2015). Additionally, genomic data obtained through NGS can enhance our understanding of phylogenetic relationships among closely related species of saproxylic beetles (Hajibabaei et al. 2007; Lui et al. 2022).
As we have seen, some threatened species are associated with veteran trees (like Rosalia alpina with beeches, Lucanus cervus and Osmoderma spp. with oaks (Drag et al. 2015). So-called "pests" are usually specialists of particular tree species (e.g. conifers infested by Scolytinae, Avtzis et al. 2019). Therefore, one of the principal future directions should be to incorporate information related to the forest quality and structure into understanding the genetic diversity of saproxylic beetles – the topic that has not been addressed so far, although knowledge about the relations of forest environments with alpha and beta diversity of wood-dwelling beetles is widely studied (Müller, et al. 2015).
Genetic data also show substantial isolation of remote populations particularly in the case of rare taxa like Cucujus cinnaberinus and Elater ferrugineus (Sikora et al. 2023a; Oleksa et al. 2015), therefore suitable forest habitat continuity (or forest cover fragmentation) should be considered in future studies on gene flow among populations of saproxylic beetles.
Similarly, Ips typographus and other bark beetles, known for their cyclic population dynamics, need also be studied using NGS to examine the genetic diversity across different outbreak and non-outbreak phases (Mykhailenko et al. 2023). By sampling individuals from various outbreak regions and time points, we could elucidate how population fluctuations affect the species' genetic structure and adaptive potential.
This study opens up various avenues and gives direction for a comprehensive understanding of the genetic dynamics, ecological roles, and conservation needs in the face of ongoing environmental changes of these enigmatic species.

Acknowledgements

The part of this study (collection of genetic information from the literature) was financed by the grant of the National Science Center Poland (UMO-2021/43/B/NZ9/00991, PI – Ł.K.).

Declarations

Competing of interests

The authors have no relevant financial or non-financial interests to disclose.
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Metadaten
Titel
Meta-analysis of spatial genetic patterns among European saproxylic beetles
verfasst von
Rama Sarvani Krovi
Nermeen R. Amer
Maria Oczkowicz
Łukasz Kajtoch
Publikationsdatum
05.11.2024
Verlag
Springer Netherlands
Erschienen in
Biodiversity and Conservation / Ausgabe 1/2025
Print ISSN: 0960-3115
Elektronische ISSN: 1572-9710
DOI
https://doi.org/10.1007/s10531-024-02940-8