Skip to main content

2018 | OriginalPaper | Buchkapitel

Nuclei Detection Using Mixture Density Networks

verfasst von : Navid Alemi Koohababni, Mostafa Jahanifar, Ali Gooya, Nasir Rajpoot

Erschienen in: Machine Learning in Medical Imaging

Verlag: Springer International Publishing

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

Nuclei detection is an important task in the histology domain as it is a main step toward further analysis such as cell counting, cell segmentation, study of cell connections, etc. This is a challenging task due to complex texture of histology image, variation in shape, and touching cells. To tackle these hurdles, many approaches have been proposed in the literature where deep learning methods stand on top in terms of performance. Hence, in this paper, we propose a novel framework for nuclei detection based on Mixture Density Networks (MDNs). These networks are suitable to map a single input to several possible outputs and we utilize this property to detect multiple seeds in a single image patch. A new modified form of a cost function is proposed for training and handling patches with missing nuclei. The probability maps of the nuclei in the individual patches are next combined to generate the final image-wide result. The experimental results show the state-of-the-art performance on complex colorectal adenocarcinoma dataset.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literatur
1.
Zurück zum Zitat Grau, V., Mewes, A., Alcaniz, M., Kikinis, R., Warfield, S.K.: Improved watershed transform for medical image segmentation using prior information. IEEE Trans. Med. Imaging 23(4), 447–458 (2004) Grau, V., Mewes, A., Alcaniz, M., Kikinis, R., Warfield, S.K.: Improved watershed transform for medical image segmentation using prior information. IEEE Trans. Med. Imaging 23(4), 447–458 (2004)
2.
Zurück zum Zitat Quelhas, P., Marcuzzo, M., Mendonça, A.M., Campilho, A.: Cell nuclei and cytoplasm joint segmentation using the sliding band filter. IEEE Trans. Med. Imaging 29(8), 1463–1473 (2010) Quelhas, P., Marcuzzo, M., Mendonça, A.M., Campilho, A.: Cell nuclei and cytoplasm joint segmentation using the sliding band filter. IEEE Trans. Med. Imaging 29(8), 1463–1473 (2010)
3.
Zurück zum Zitat Schmitt, O., Hasse, M.: Radial symmetries based decomposition of cell clusters in binary and gray level images. Pattern Recognit. 41(6), 1905–1923 (2008)MATH Schmitt, O., Hasse, M.: Radial symmetries based decomposition of cell clusters in binary and gray level images. Pattern Recognit. 41(6), 1905–1923 (2008)MATH
4.
Zurück zum Zitat Parvin, B., Yang, Q., Han, J., Chang, H., Rydberg, B., Barcellos-Hoff, M.H.: Iterative voting for inference of structural saliency and characterization of subcellular events. IEEE Trans. Image Process. 16(3), 615–623 (2007)MathSciNet Parvin, B., Yang, Q., Han, J., Chang, H., Rydberg, B., Barcellos-Hoff, M.H.: Iterative voting for inference of structural saliency and characterization of subcellular events. IEEE Trans. Image Process. 16(3), 615–623 (2007)MathSciNet
5.
Zurück zum Zitat Qi, X., Xing, F., Foran, D.J., Yang, L.: Robust segmentation of overlapping cells in histopathology specimens using parallel seed detection and repulsive level set. IEEE Trans. Biomed. Eng. 59(3), 754–765 (2012) Qi, X., Xing, F., Foran, D.J., Yang, L.: Robust segmentation of overlapping cells in histopathology specimens using parallel seed detection and repulsive level set. IEEE Trans. Biomed. Eng. 59(3), 754–765 (2012)
6.
Zurück zum Zitat Hafiane, A., Bunyak, F., Palaniappan, K.: Fuzzy clustering and active contours for histopathology image segmentation and nuclei detection. In: International Conference on Advanced Concepts for Intelligent Vision Systems, pp. 903–914. Springer, Berlin (2008) Hafiane, A., Bunyak, F., Palaniappan, K.: Fuzzy clustering and active contours for histopathology image segmentation and nuclei detection. In: International Conference on Advanced Concepts for Intelligent Vision Systems, pp. 903–914. Springer, Berlin (2008)
7.
Zurück zum Zitat Akakin, H.C., et al.: Automated detection of cells from immunohistochemically-stained tissues: application to Ki-67 nuclei staining. In: Medical Imaging 2012: Computer-Aided Diagnosis. Volume 8315, International Society for Optics and Photonics (2012) 831503 Akakin, H.C., et al.: Automated detection of cells from immunohistochemically-stained tissues: application to Ki-67 nuclei staining. In: Medical Imaging 2012: Computer-Aided Diagnosis. Volume 8315, International Society for Optics and Photonics (2012) 831503
8.
Zurück zum Zitat Yang, L., Tuzel, O., Meer, P., Foran, D.J.: Automatic image analysis of histopathology specimens using concave vertex graph. In: International Conference on Medical Image Computing and Computer-Assisted Intervention,pp. 833–841. Springer, Berlin (2008) Yang, L., Tuzel, O., Meer, P., Foran, D.J.: Automatic image analysis of histopathology specimens using concave vertex graph. In: International Conference on Medical Image Computing and Computer-Assisted Intervention,pp. 833–841. Springer, Berlin (2008)
9.
Zurück zum Zitat Jung, C., Kim, C.: Segmenting clustered nuclei using H-minima transform-based marker extraction and contour parameterization. IEEE Trans. Biomed. Eng. 57(10), 2600–2604 (2010) Jung, C., Kim, C.: Segmenting clustered nuclei using H-minima transform-based marker extraction and contour parameterization. IEEE Trans. Biomed. Eng. 57(10), 2600–2604 (2010)
10.
Zurück zum Zitat Thomas, R.M., John, J.: A review on cell detection and segmentation in microscopic images. In: 2017 International Conference on Circuit, Power and Computing Technologies (ICCPCT), pp. 1–5. IEEE (2017) Thomas, R.M., John, J.: A review on cell detection and segmentation in microscopic images. In: 2017 International Conference on Circuit, Power and Computing Technologies (ICCPCT), pp. 1–5. IEEE (2017)
11.
Zurück zum Zitat Cireşan, D.C., Giusti, A., Gambardella, L.M., Schmidhuber, J.: Mitosis detection in breast cancer histology images with deep neural networks. In: International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 411–418. Springer, Berlin (2013) Cireşan, D.C., Giusti, A., Gambardella, L.M., Schmidhuber, J.: Mitosis detection in breast cancer histology images with deep neural networks. In: International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 411–418. Springer, Berlin (2013)
12.
Zurück zum Zitat Xie, Y., Xing, F., Shi, X., Kong, X., Su, H., Yang, L.: Efficient and robust cell detection: a structured regression approach. Med. Image Anal. 44, 245–254 (2018) Xie, Y., Xing, F., Shi, X., Kong, X., Su, H., Yang, L.: Efficient and robust cell detection: a structured regression approach. Med. Image Anal. 44, 245–254 (2018)
13.
Zurück zum Zitat Xu, J., Xiang, L., Liu, Q., Gilmore, H., Wu, J., Tang, J., Madabhushi, A.: Stacked sparse autoencoder (SSAE) for nuclei detection on breast cancer histopathology images. IEEE Trans. Med. Imaging 35(1), 119–130 (2016) Xu, J., Xiang, L., Liu, Q., Gilmore, H., Wu, J., Tang, J., Madabhushi, A.: Stacked sparse autoencoder (SSAE) for nuclei detection on breast cancer histopathology images. IEEE Trans. Med. Imaging 35(1), 119–130 (2016)
14.
Zurück zum Zitat Sirinukunwattana, K., Raza, S.E.A., Tsang, Y.W., Snead, D.R., Cree, I.A., Rajpoot, N.M.: Locality sensitive deep learning for detection and classification of nuclei in routine colon cancer histology images. IEEE Trans. Med. Imaging 35(5), 1196–1206 (2016) Sirinukunwattana, K., Raza, S.E.A., Tsang, Y.W., Snead, D.R., Cree, I.A., Rajpoot, N.M.: Locality sensitive deep learning for detection and classification of nuclei in routine colon cancer histology images. IEEE Trans. Med. Imaging 35(5), 1196–1206 (2016)
15.
Zurück zum Zitat Bishop, C.M.: Mixture density networks. Technical report. Citeseer (1994) Bishop, C.M.: Mixture density networks. Technical report. Citeseer (1994)
16.
Zurück zum Zitat Xie, W., Noble, J.A., Zisserman, A.: Microscopy cell counting and detection with fully convolutional regression networks. Comput. Methods Biomech. Biomed. Eng.: Imaging Vis. 6(3), 283–292 (2018) Xie, W., Noble, J.A., Zisserman, A.: Microscopy cell counting and detection with fully convolutional regression networks. Comput. Methods Biomech. Biomed. Eng.: Imaging Vis. 6(3), 283–292 (2018)
17.
Zurück zum Zitat He, K., Zhang, X., Ren, S., Sun, J.: Deep residual learning for image recognition. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 770–778 (2016) He, K., Zhang, X., Ren, S., Sun, J.: Deep residual learning for image recognition. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 770–778 (2016)
Metadaten
Titel
Nuclei Detection Using Mixture Density Networks
verfasst von
Navid Alemi Koohababni
Mostafa Jahanifar
Ali Gooya
Nasir Rajpoot
Copyright-Jahr
2018
DOI
https://doi.org/10.1007/978-3-030-00919-9_28