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Erschienen in:

2013 | OriginalPaper | Buchkapitel

14. Nucleic Acid Enzyme-Based DNA Nanomachine for Biosensing

verfasst von : Di Li, Chunhai Fan

Erschienen in: DNA Nanotechnology

Verlag: Springer Berlin Heidelberg

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Abstract

The mechanical motion of DNA nanomachine is driven by the chemical entropies that are released from the stimuli-induced structural variations of DNA nanostructures. Up to now, several stimuli have been proposed. In this chapter, we will discuss nucleic acid enzymes as a distinct stimulus to drive DNA nanomachines and its applications in biosensing are also mentioned as well.

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Vorheriges Kapitel Functional DNA-Integrated Nanomaterials for Biosensing

Nächstes Kapitel DNA Nanotechnology and Drug Delivery

Mao CD, Sun WQ, Shen ZY, Seeman NC (1999) A nanomechanical device based on the B-Z transition of DNA. Nature 397(6715):144–146CrossRef

Liu DS, Balasubramanian S (2003) A proton-fuelled DNA nanomachine. Angew Chem Int Ed 42(46):5734–5736CrossRef

Cheng EJ, Xing YZ, Chen P, Yang Y, Sun YW, Zhou DJ, Xu LJ, Fan QH, Liu DS (2009) A pH-triggered, fast-responding DNA hydrogel. Angew Chem Int Ed 48(41):7660–7663CrossRef

Fahlman RP, Hsing M, Sporer-Tuhten CS, Sen D (2003) Duplex pinching: a structural switch suitable for contractile DNA nanoconstructions. Nano Lett 3(8):1073–1078CrossRef

Yurke B, Turberfield AJ, Mills AP, Simmel FC, Neumann JL (2000) A DNA-fuelled molecular machine made of DNA. Nature 406(6796):605–608CrossRef

Shin JS, Pierce NA (2004) A synthetic DNA walker for molecular transport. J Am Chem Soc 126(35):10834–10835CrossRef

Krishnan Y, Simmel FC (2011) Nucleic acid based molecular devices. Angew Chem Int Ed 50(14):3124–3156CrossRef

Turberfield AJ, Mitchell JC, Yurke B, Mills AP, Blakey MI, Simmel FC (2003) DNA fuel for free-running nanomachines. Phys Rev Lett 90(11):118102CrossRef

Teller C, Willner I (2010) Functional nucleic acid nanostructures and DNA machines. Curr Opin Biotechnol 21(4):376–391CrossRef

10.

Sherman WB, Seeman NC (2004) A precisely controlled DNA biped walking device. Nano Lett 4(7):1203–1207CrossRef

11.

Yin P, Yan H, Daniell XG, Turberfield AJ, Reif JH (2004) A unidirectional DNA walker that moves autonomously along a track. Angew Chem Int Ed 43(37):4906–4911CrossRef

12.

Tian Y, Mao CD (2004) Molecular gears: a pair of DNA circles continuously rolls against each other. J Am Chem Soc 126(37):11410–11411CrossRef

13.

Li YF, Sen D (1998) The modus operandi of a DNA enzyme: enhancement of substrate basicity. Chem Biol 5(1):1–12CrossRef

14.

Breaker RR, Joyce GF (1994) Emergence of a replicating species from an in-vitro RNA evolution reaction. Proc Natl Acad Sci U S A 91(13):6093–6097CrossRef

15.

Breaker RR, Joyce GF (1995) A DNA enzyme with Mg²⁺-dependent DNA phosphoesterase activity. Chem Biol 2(10):655–660CrossRef

16.

Lan T, Furuya K, Lu Y (2010) A highly selective lead sensor based on a classic lead DNAzyme. Chem Commun 46(22):3896–3898CrossRef

17.

Tian Y, He Y, Chen Y, Yin P, Mao CD (2005) Molecular devices – a DNAzyme that walks processively and autonomously along a one-dimensional track. Angew Chem Int Ed 44(28):4355–4358CrossRef

18.

Lund K, Manzo AJ, Dabby N, Michelotti N, Johnson-Buck A, Nangreave J, Taylor S, Pei RJ, Stojanovic MN, Walter NG, Winfree E, Yan H (2010) Molecular robots guided by prescriptive landscapes. Nature 465(7295):206–210CrossRef

19.

Wickham SFJ, Bath J, Katsuda Y, Endo M, Hidaka K, Sugiyama H, Turberfield AJ (2012) A DNA-based molecular motor that can navigate a network of tracks. Nat Nanotechnol 7(3):169–173CrossRef

20.

Benenson Y, Paz-Elizur T, Adar R, Keinan E, Livneh Z, Shapiro E (2001) Programmable and autonomous computing machine made of biomolecules. Nature 414(6862):430–434CrossRef

21.

Benenson Y, Adar R, Paz-Elizur T, Livneh Z, Shapiro E (2003) DNA molecule provides a computing machine with both data and fuel. Proc Natl Acad Sci 100(5):2191–2196CrossRef

22.

Shoshani S, Piran R, Arava Y, Keinan E (2012) A molecular cryptosystem for images by DNA computing. Angew Chem Int Ed 51(12):2883–2887CrossRef

23.

Weizmann Y, Cheglakov Z, Pavlov V, Willner I (2006) Autonomous fueled mechanical replication of nucleic acid templates for the amplified optical detection of DNA. Angew Chem Int Ed 45(14):2238–2242CrossRef

24.

Weizmann Y, Cheglakov Z, Willner I (2008) A Fok I/DNA machine that duplicates its analyte gene sequence. J Am Chem Soc 130(51):17224–17225CrossRef

25.

Beyer S, Simmel FC (2006) A modular DNA signal translator for the controlled release of a protein by an aptamer. Nucleic Acids Res 34(5):1581–1587CrossRef

26.

Walker GT, Fraiser MS, Schram JL, Little MC, Nadeau JG, Malinowski DP (1992) Strand displacement amplifcation – an isothermal, in vitro DNA amplification technique. Nucleic Acids Res 20(7):1691–1696CrossRef

27.

Walker GT, Little MC, Nadeau JG, Shank DD (1992) Isothermal in vitro amplification of DNA by a restriction enzyme DNA-polymerase system. Proc Natl Acad Sci U S A 89(1):392–396CrossRef

28.

Weizmann Y, Beissenhirtz MK, Cheglakov Z, Nowarski R, Kotler M, Willner I (2006) A virus spotlighted by an autonomous DNA machine. Angew Chem Int Ed 45(44):7384–7388CrossRef

29.

Shlyahovsky B, Li D, Weizmann Y, Nowarski R, Kotler M, Willner I (2007) Spotlighting of cocaine by an autonomous aptamer-based machine. J Am Chem Soc 129(13):3814–3815CrossRef

30.

Li D, Wieckowska A, Willner I (2008) Optical analysis of Hg²⁺ ions by oligonucleotide-gold-nanoparticle hybrids and DNA-based machines. Angew Chem Int Ed 47(21):3927–3931CrossRef

31.

Zhu CF, Wen YQ, Li D, Wang LH, Song SP, Fan CH, Willner I (2009) Inhibition of the in vitro replication of DNA by an aptamer-protein complex in an autonomous DNA machine. Chem Eur J 15(44):11898–11903CrossRef

32.

Zhu CF, Wen YQ, Peng HZ, Long YT, He Y, Huang Q, Li D, Fan CH (2011) A methylation-stimulated DNA machine: an autonomous isothermal route to methyltransferase activity and inhibition analysis. Anal Bioanal Chem 399(10):3459–3464CrossRef

33.

Elbaz J, Shlyahovsky B, Willner I (2008) A DNAzyme cascade for the amplified detection of Pb²⁺ ions or L-histidine. Chem Commun 13:1569–1571CrossRef

34.

Elbaz J, Moshe M, Shlyahovsky B, Willner I (2009) Cooperative multicomponent self-assembly of nucleic acid structures for the activation of DNAzyme cascades: a paradigm for DNA sensors and aptasensors. Chem Eur J 15(14):3411–3418CrossRef

Titel: Nucleic Acid Enzyme-Based DNA Nanomachine for Biosensing
verfasst von: Di Li
Chunhai Fan
Verlag: Springer Berlin Heidelberg
Buch: DNA Nanotechnology
Print ISBN: 978-3-642-36076-3

Electronic ISBN: 978-3-642-36077-0

Copyright-Jahr: 2013
DOI: https://doi.org/10.1007/978-3-642-36077-0_14

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