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Über dieses Buch

This book constitutes the refereed proceedings of the 19th Annual International Conference on Research in Computational Molecular Biology, RECOMB 2015, held in Warsaw, Poland, in April 2015. The 36 extended abstracts were carefully reviewed and selected from 170 submissions. They report on original research in all areas of computational molecular biology and bioinformatics.

Inhaltsverzeichnis

Frontmatter

2015 | OriginalPaper | Buchkapitel

Efficient Alignment Free Sequence Comparison with Bounded Mismatches

Srinivas Aluru, Alberto Apostolico, Sharma V. Thankachan

2015 | OriginalPaper | Buchkapitel

DockStar: A Novel ILP Based Integrative Method for Structural Modelling of Multimolecular Protein Complexes (Extended Abstract)

Naama Amir, Dan Cohen, Haim J. Wolfson

2015 | OriginalPaper | Buchkapitel

CRISPR Detection from Short Reads Using Partial Overlap Graphs

Ilan Ben-Bassat, Benny Chor

2015 | OriginalPaper | Buchkapitel

HapTree-X: An Integrative Bayesian Framework for Haplotype Reconstruction from Transcriptome and Genome Sequencing Data

Emily Berger, Deniz Yorukoglu, Bonnie Berger

2015 | OriginalPaper | Buchkapitel

Read Clouds Uncover Variation in Complex Regions of the Human Genome

Alex Bishara, Yuling Liu, Dorna Kashef-Haghighi, Ziming Weng, Daniel E. Newburger, Robert West, Arend Sidow, Serafim Batzoglou

2015 | OriginalPaper | Buchkapitel

Learning Microbial Interaction Networks from Metagenomic Count Data

Surojit Biswas, Meredith McDonald, Derek S. Lundberg, Jeffery L. Dangl, Vladimir Jojic

2015 | OriginalPaper | Buchkapitel

Immunoglobulin Classification Using the Colored Antibody Graph

Stefano R. Bonissone, Pavel A. Pevzner

2015 | OriginalPaper | Buchkapitel

CIDANE: Comprehensive Isoform Discovery and Abundance Estimation

Stefan Canzar, Sandro Andreotti, David Weese, Knut Reinert, Gunnar W. Klau

2015 | OriginalPaper | Buchkapitel

Diffusion Component Analysis: Unraveling Functional Topology in Biological Networks

Hyunghoon Cho, Bonnie Berger, Jian Peng

2015 | OriginalPaper | Buchkapitel

Fragmentation Trees Reloaded

Kai Dührkop, Sebastian Böcker

2015 | OriginalPaper | Buchkapitel

KGSrna: Efficient 3D Kinematics-Based Sampling for Nucleic Acids

Rasmus Fonseca, Henry van den Bedem, Julie Bernauer

2015 | OriginalPaper | Buchkapitel

Locating a Tree in a Phylogenetic Network in Quadratic Time

Philippe Gambette, Andreas D. M. Gunawan, Anthony Labarre, Stéphane Vialette, Louxin Zhang

2015 | OriginalPaper | Buchkapitel

Constructing Structure Ensembles of Intrinsically Disordered Proteins from Chemical Shift Data

Huichao Gong, Sai Zhang, Jiangdian Wang, Haipeng Gong, Jianyang Zeng

2015 | OriginalPaper | Buchkapitel

Comets (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Algorithm to Optimize Binding Affinity and Specificity with Respect to Sequence

Mark A. Hallen, Bruce R. Donald

2015 | OriginalPaper | Buchkapitel

Efficient and Accurate Multiple-Phenotypes Regression Method for High Dimensional Data Considering Population Structure

Jong Wha J. Joo, Eun Yong Kang, Elin Org, Nick Furlotte, Brian Parks, Aldons J. Lusis, Eleazar Eskin

2015 | OriginalPaper | Buchkapitel

BWM*: A Novel, Provable, Ensemble-Based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design

Jonathan D. Jou, Swati Jain, Ivelin Georgiev, Bruce R. Donald

2015 | OriginalPaper | Buchkapitel

An Efficient Nonlinear Regression Approach for Genome-Wide Detection of Marginal and Interacting Genetic Variations

Seunghak Lee, Aurélie Lozano, Prabhanjan Kambadur, Eric P. Xing

2015 | OriginalPaper | Buchkapitel

Exploration of Designability of Proteins Using Graph Features of Contact Maps: Beyond Lattice Models

Sumudu P. Leelananda, Robert L. Jernigan, Andrzej Kloczkowski

2015 | OriginalPaper | Buchkapitel

CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer

Mark D. M. Leiserson, Hsin-Ta Wu, Fabio Vandin, Benjamin J. Raphael

2015 | OriginalPaper | Buchkapitel

Deep Feature Selection: Theory and Application to Identify Enhancers and Promoters

Yifeng Li, Chih-Yu Chen, Wyeth W. Wasserman

2015 | OriginalPaper | Buchkapitel

Protein Contact Prediction by Integrating Joint Evolutionary Coupling Analysis and Supervised Learning

Jianzhu Ma, Sheng Wang, Zhiyong Wang, Jinbo Xu

2015 | OriginalPaper | Buchkapitel

ScaffMatch: Scaffolding Algorithm Based on Maximum Weight Matching

Igor Mandric, Alex Zelikovsky

2015 | OriginalPaper | Buchkapitel

A Symmetric Length-Aware Enrichment Test

David Manescu, Uri Keich

2015 | OriginalPaper | Buchkapitel

Functional Alignment of Metabolic Networks

Arnon Mazza, Allon Wagner, Eytan Ruppin, Roded Sharan

2015 | OriginalPaper | Buchkapitel

Joint Inference of Genome Structure and Content in Heterogeneous Tumor Samples

Andrew McPherson, Andrew Roth, Cedric Chauve, S. Cenk Sahinalp

2015 | OriginalPaper | Buchkapitel

Ultra-Large Alignments Using Ensembles of Hidden Markov Models

Nam-phuong Nguyen, Siavash Mirarab, Keerthana Kumar, Tandy Warnow

2015 | OriginalPaper | Buchkapitel

Topological Signatures for Population Admixture

Laxmi Parida, Filippo Utro, Deniz Yorukoglu, Anna Paola Carrieri, David Kuhn, Saugata Basu

2015 | OriginalPaper | Buchkapitel

Haplotype Allele Frequency (HAF) Score: Predicting Carriers of Ongoing Selective Sweeps Without Knowledge of the Adaptive Allele

Roy Ronen, Glenn Tesler, Ali Akbari, Shay Zakov, Noah A. Rosenberg, Vineet Bafna

2015 | OriginalPaper | Buchkapitel

Gap Filling as Exact Path Length Problem

Leena Salmela, Kristoffer Sahlin, Veli Mäkinen, Alexandru I. Tomescu

2015 | OriginalPaper | Buchkapitel

Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations

Emre Sefer, Geet Duggal, Carl Kingsford

2015 | OriginalPaper | Buchkapitel

A Fast and Exact Algorithm for the Exemplar Breakpoint Distance

Mingfu Shao, Bernard M. E. Moret

2015 | OriginalPaper | Buchkapitel

Deciding When to Stop: Efficient Experimentation to Learn to Predict Drug-Target Interactions (Extended Abstract)

Maja Temerinac-Ott, Armaghan W. Naik, Robert F. Murphy

2015 | OriginalPaper | Buchkapitel

On the Sample Complexity of Cancer Pathways Identification

Fabio Vandin, Benjamin J. Raphael, Eli Upfal

2015 | OriginalPaper | Buchkapitel

A Novel Probabilistic Methodology for eQTL Analysis of Signaling Networks

Roni Wilentzik, Irit Gat-Viks

2015 | OriginalPaper | Buchkapitel

Rapidly Registering Identity-by-Descent Across Ancestral Recombination Graphs

Shuo Yang, Shai Carmi, Itsik Pe’er

2015 | OriginalPaper | Buchkapitel

Computational Protein Design Using AND/OR Branch-and-Bound Search

Yichao Zhou, Yuexin Wu, Jianyang Zeng

Backmatter

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