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2019 | OriginalPaper | Buchkapitel

Resolving the Crossing/Kissing Fiber Ambiguity Using Functionally Informed COMMIT

verfasst von : Matteo Frigo, Isa Costantini, Rachid Deriche, Samuel Deslauriers-Gauthier

Erschienen in: Computational Diffusion MRI

Verlag: Springer International Publishing

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Abstract

The architecture of the white matter is endowed with kissing and crossing bundles configurations. When these white matter tracts are reconstructed using diffusion MRI tractography, this systematically induces the reconstruction of many fiber tracts that are not coherent with the structure of the brain. The question on how to discriminate between true positive connections and false positive connections is the one addressed in this work. State-of-the-art techniques provide a partial solution to this problem by considering anatomical priors in the false positives detection process. We propose a novel model that tackles the same issue but takes into account both structural and functional information by combining them in a convex optimization problem. We validate it on two toy phantoms that reproduce the kissing and the crossing bundles configurations, showing that through this approach we are able to correctly distinguish true positives and false positives.

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Literatur
1.
Zurück zum Zitat Bach, F., Jenatton, R., Mairal, J., Obozinski, G., et al.: Structured sparsity through convex optimization. Stat. Sci. 27(4), 450–468 (2012)MathSciNetCrossRef Bach, F., Jenatton, R., Mairal, J., Obozinski, G., et al.: Structured sparsity through convex optimization. Stat. Sci. 27(4), 450–468 (2012)MathSciNetCrossRef
2.
Zurück zum Zitat Beck, A., Teboulle, M.: A fast iterative shrinkage-thresholding algorithm for linear inverse problems. SIAM J. Imaging Sci. 2(1), 183–202 (2009)MathSciNetCrossRef Beck, A., Teboulle, M.: A fast iterative shrinkage-thresholding algorithm for linear inverse problems. SIAM J. Imaging Sci. 2(1), 183–202 (2009)MathSciNetCrossRef
3.
Zurück zum Zitat Caruyer, E., Daducci, A., Descoteaux, M., Houde, J.C., Thiran, J.P., Verma, R.: Phantomas: a flexible software library to simulate diffusion mr phantoms. In: ISMRM (2014) Caruyer, E., Daducci, A., Descoteaux, M., Houde, J.C., Thiran, J.P., Verma, R.: Phantomas: a flexible software library to simulate diffusion mr phantoms. In: ISMRM (2014)
4.
Zurück zum Zitat Caruyer, E., Lenglet, C., Sapiro, G., Deriche, R.: Design of multishell sampling schemes with uniform coverage in diffusion MRI. Magn. Reson. Med. 69(6), 1534–1540 (2013)CrossRef Caruyer, E., Lenglet, C., Sapiro, G., Deriche, R.: Design of multishell sampling schemes with uniform coverage in diffusion MRI. Magn. Reson. Med. 69(6), 1534–1540 (2013)CrossRef
5.
Zurück zum Zitat Daducci, A., Barakovic, M., Girard, G., Descoteaux, M., Thiran, J.P.: Reducing false positives in tractography with microstructural and anatomical priors. In: ISMRM 2018-International Society for Magnetic Resonance in Medicine (2018) Daducci, A., Barakovic, M., Girard, G., Descoteaux, M., Thiran, J.P.: Reducing false positives in tractography with microstructural and anatomical priors. In: ISMRM 2018-International Society for Magnetic Resonance in Medicine (2018)
6.
Zurück zum Zitat Daducci, A., Dal Palú, A., Descoteaux, M., Thiran, J.P.: Microstructure informed tractography: pitfalls and open challenges. Front. Neurosci. 10, 247 (2016)CrossRef Daducci, A., Dal Palú, A., Descoteaux, M., Thiran, J.P.: Microstructure informed tractography: pitfalls and open challenges. Front. Neurosci. 10, 247 (2016)CrossRef
7.
Zurück zum Zitat Daducci, A., Dal Palù, A., Lemkaddem, A., Thiran, J.P.: Commit: convex optimization modeling for microstructure informed tractography. IEEE Trans. Med. Imaging 34(1), 246–257 (2015)CrossRef Daducci, A., Dal Palù, A., Lemkaddem, A., Thiran, J.P.: Commit: convex optimization modeling for microstructure informed tractography. IEEE Trans. Med. Imaging 34(1), 246–257 (2015)CrossRef
8.
Zurück zum Zitat Frigo, M., Barakovic, M., Thiran, J.P., Daducci, A.: Hierarchical tractography optimisation. In: CoBCoM 2017-Computational Brain Connectivity Mapping Winter School Workshop, p. 1 (2017) Frigo, M., Barakovic, M., Thiran, J.P., Daducci, A.: Hierarchical tractography optimisation. In: CoBCoM 2017-Computational Brain Connectivity Mapping Winter School Workshop, p. 1 (2017)
9.
Zurück zum Zitat Frigo, M., Gallardo, G., Costantini, I., Daducci, A., Wassermann, D., Deriche, R., Deslauriers-Gauthier, S.: Reducing false positive connection in tractograms using joint structure-function filtering. In: OHBM 2018-Organization for Human Brain Mapping (2018) Frigo, M., Gallardo, G., Costantini, I., Daducci, A., Wassermann, D., Deriche, R., Deslauriers-Gauthier, S.: Reducing false positive connection in tractograms using joint structure-function filtering. In: OHBM 2018-Organization for Human Brain Mapping (2018)
10.
Zurück zum Zitat Girard, G., Fick, R., Descoteaux, M., Deriche, R., Wassermann, D.: Axtract: microstructure-driven tractography based on the ensemble average propagator. In: International Conference on Information Processing in Medical Imaging, pp. 675–686. Springer (2015) Girard, G., Fick, R., Descoteaux, M., Deriche, R., Wassermann, D.: Axtract: microstructure-driven tractography based on the ensemble average propagator. In: International Conference on Information Processing in Medical Imaging, pp. 675–686. Springer (2015)
11.
Zurück zum Zitat Jenatton, R., Mairal, J., Obozinski, G., Bach, F.R.: Proximal methods for sparse hierarchical dictionary learning. In: ICML, pp. 487–494 (2010) (No. 2010, Citeseer) Jenatton, R., Mairal, J., Obozinski, G., Bach, F.R.: Proximal methods for sparse hierarchical dictionary learning. In: ICML, pp. 487–494 (2010) (No. 2010, Citeseer)
12.
Zurück zum Zitat Leonardi, N., Van De Ville, D.: On spurious and real fluctuations of dynamic functional connectivity during rest. Neuroimage 104, 430–436 (2015)CrossRef Leonardi, N., Van De Ville, D.: On spurious and real fluctuations of dynamic functional connectivity during rest. Neuroimage 104, 430–436 (2015)CrossRef
13.
Zurück zum Zitat Maier-Hein, K.H., Neher, P.F., Houde, J.C., Côté, M.A., Garyfallidis, E., Zhong, J., Chamberland, M., Yeh, F.C., Lin, Y.C., Ji, Q., et al.: The challenge of mapping the human connectome based on diffusion tractography. Nat. Commun. 8(1), 1349 (2017)CrossRef Maier-Hein, K.H., Neher, P.F., Houde, J.C., Côté, M.A., Garyfallidis, E., Zhong, J., Chamberland, M., Yeh, F.C., Lin, Y.C., Ji, Q., et al.: The challenge of mapping the human connectome based on diffusion tractography. Nat. Commun. 8(1), 1349 (2017)CrossRef
14.
Zurück zum Zitat Panagiotaki, E., Schneider, T., Siow, B., Hall, M.G., Lythgoe, M.F., Alexander, D.C.: Compartment models of the diffusion MR signal in brain white matter: a taxonomy and comparison. Neuroimage 59(3), 2241–2254 (2012)CrossRef Panagiotaki, E., Schneider, T., Siow, B., Hall, M.G., Lythgoe, M.F., Alexander, D.C.: Compartment models of the diffusion MR signal in brain white matter: a taxonomy and comparison. Neuroimage 59(3), 2241–2254 (2012)CrossRef
15.
Zurück zum Zitat Pestilli, F., Yeatman, J.D., Rokem, A., Kay, K.N., Wandell, B.A.: Evaluation and statistical inference for human connectomes. Nat. Methods 11(10), 1058 (2014)CrossRef Pestilli, F., Yeatman, J.D., Rokem, A., Kay, K.N., Wandell, B.A.: Evaluation and statistical inference for human connectomes. Nat. Methods 11(10), 1058 (2014)CrossRef
16.
Zurück zum Zitat Sanz Leon, P., Knock, S.A., Woodman, M.M., Domide, L., Mersmann, J., McIntosh, A.R., Jirsa, V.: The virtual brain: a simulator of primate brain network dynamics. Front. Neuroinformatics 7, 10 (2013)CrossRef Sanz Leon, P., Knock, S.A., Woodman, M.M., Domide, L., Mersmann, J., McIntosh, A.R., Jirsa, V.: The virtual brain: a simulator of primate brain network dynamics. Front. Neuroinformatics 7, 10 (2013)CrossRef
17.
Zurück zum Zitat Smith, R.E., Tournier, J.D., Calamante, F., Connelly, A.: Sift2: enabling dense quantitative assessment of brain white matter connectivity using streamlines tractography. Neuroimage 119, 338–351 (2015)CrossRef Smith, R.E., Tournier, J.D., Calamante, F., Connelly, A.: Sift2: enabling dense quantitative assessment of brain white matter connectivity using streamlines tractography. Neuroimage 119, 338–351 (2015)CrossRef
18.
Zurück zum Zitat The virtual brain: the resting state network scripting tutorial (2018) The virtual brain: the resting state network scripting tutorial (2018)
19.
Zurück zum Zitat Zalesky, A., Fornito, A., Cocchi, L., Gollo, L.L., van den Heuvel, M.P., Breakspear, M.: Connectome sensitivity or specificity: which is more important? Neuroimage 142, 407–420 (2016)CrossRef Zalesky, A., Fornito, A., Cocchi, L., Gollo, L.L., van den Heuvel, M.P., Breakspear, M.: Connectome sensitivity or specificity: which is more important? Neuroimage 142, 407–420 (2016)CrossRef
Metadaten
Titel
Resolving the Crossing/Kissing Fiber Ambiguity Using Functionally Informed COMMIT
verfasst von
Matteo Frigo
Isa Costantini
Rachid Deriche
Samuel Deslauriers-Gauthier
Copyright-Jahr
2019
DOI
https://doi.org/10.1007/978-3-030-05831-9_26