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2016 | OriginalPaper | Buchkapitel

Specific Viruses Present in Polluted Groundwater Are Indicative of the Source of Nitrates and Faecal Contamination in Agricultural Areas

verfasst von : Sílvia Bofill-Mas, Marta Rusiñol, Josep Fraile, Teresa Garrido, Antoni Munné, Rosina Girones

Erschienen in: Experiences from Ground, Coastal and Transitional Water Quality Monitoring

Verlag: Springer International Publishing

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Abstract

Microbial source tracking (MST) tools are used to identify sources of faecal pollution to accurately assess public health risks and implement best management practices. Many different viruses are excreted by humans and animals and are frequently detected in water contaminated with faeces or/and urine. Because of the large degree of host specificity of each virus and the substantial stability of many excreted viruses in the environment, some viral groups are considered to be accurate MST indicators. The Laboratory of Virus Contaminants of Water and Food at the University of Barcelona has proposed the use of viral indicators as well as cost-effective methods for the concentration of viruses from water. The developed procedures have been used to determine the levels of faecal pollution in environmental samples as well as for tracing the origin of faecal contamination. Such tools were recently used by the Catalan Water Agency to identify nitrate contamination sources in groundwater.
Human adenoviruses, human polyomavirus JC, porcine adenoviruses, bovine polyomaviruses, chicken/turkey parvoviruses, and ovine polyomaviruses can be quantified in samples using molecular methods (qPCR). The selected DNA viruses specifically infect their hosts and are persistently excreted in faeces and/or urine throughout the year in all geographical areas studied. The procedures that have been developed to quantify these viruses have been applied to bathing, coastal, surface and groundwater. In this study, the source of nitrate contamination in groundwater was identified by analysing viral markers, thereby demonstrating the usefulness of the selected viruses for the identification of sources of contamination in water. This methodology can be used to provide information to guide the proper application of measures in place to protect water from pollution caused by nitrates from several sources and thus to facilitate the accurate application of the 91/676/EEC Directive, which is mainly focused on agricultural sources of water contamination.

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Literatur
1.
Zurück zum Zitat Hunt RJ, Borchardt MA, Richards KD, Spencer SK (2010) Assessment of sewer source contamination of drinking water wells using tracers and human enteric viruses. Environ Sci Technol 44:7956–7963. doi:10.1021/es100698m CrossRef Hunt RJ, Borchardt MA, Richards KD, Spencer SK (2010) Assessment of sewer source contamination of drinking water wells using tracers and human enteric viruses. Environ Sci Technol 44:7956–7963. doi:10.​1021/​es100698m CrossRef
2.
Zurück zum Zitat Borchardt MA, Spencer SK, Kieke BA, Lambertini E, Loge FJ (2012) Viruses in nondisinfected drinking water from municipal wells and community incidence of acute gastrointestinal illness. Environ Health Perspect 120:1272–1279. doi:10.1289/ehp.1104499 CrossRef Borchardt MA, Spencer SK, Kieke BA, Lambertini E, Loge FJ (2012) Viruses in nondisinfected drinking water from municipal wells and community incidence of acute gastrointestinal illness. Environ Health Perspect 120:1272–1279. doi:10.​1289/​ehp.​1104499 CrossRef
3.
Zurück zum Zitat Abbaszadegan BYM, Lechevallier M, Gerba C (2003) Occurrence of viruses in ground waters. Am Water Works Assoc J 95:107–120 Abbaszadegan BYM, Lechevallier M, Gerba C (2003) Occurrence of viruses in ground waters. Am Water Works Assoc J 95:107–120
7.
Zurück zum Zitat Decret 136/2009 (2009) Diari Oficial de la Generalitat de Catalunya, no5457, d’1 de setembre, d'aprovació del programa d’actuació aplicable a les zones vulnerables en relació amb la contaminació de nitrats que procedeixen de fonts agràries i de gestió de les dejeccions ra. 65858–65902 Decret 136/2009 (2009) Diari Oficial de la Generalitat de Catalunya, no5457, d’1 de setembre, d'aprovació del programa d’actuació aplicable a les zones vulnerables en relació amb la contaminació de nitrats que procedeixen de fonts agràries i de gestió de les dejeccions ra. 65858–65902
8.
Zurück zum Zitat Decret 220/2001 (2001) Diari Oficial de la Generalitat de Catalunya, no3447, d’1 d'agost, de gestió de les dejeccions ramaderes. 2001:1–8 Decret 220/2001 (2001) Diari Oficial de la Generalitat de Catalunya, no3447, d’1 d'agost, de gestió de les dejeccions ramaderes. 2001:1–8
10.
Zurück zum Zitat John DE, Rose JB (2005) Review of factors affecting microbial survival in groundwater. Environ Sci Technol 39:7345–7356CrossRef John DE, Rose JB (2005) Review of factors affecting microbial survival in groundwater. Environ Sci Technol 39:7345–7356CrossRef
11.
Zurück zum Zitat Meixell BW, Borchardt MA, Spencer SK (2013) Accumulation and inactivation of avian influenza virus by the filter-feeding invertebrate Daphnia magna. Appl Environ Microbiol 79:7249–7255. doi:10.1128/AEM.02439-13 CrossRef Meixell BW, Borchardt MA, Spencer SK (2013) Accumulation and inactivation of avian influenza virus by the filter-feeding invertebrate Daphnia magna. Appl Environ Microbiol 79:7249–7255. doi:10.​1128/​AEM.​02439-13 CrossRef
12.
Zurück zum Zitat Gerba CP, Goyal SM, LaBelle RL, Cech I, Bodgan GF (1979) Failure of indicator bacteria to reflect the occurrence of enteroviruses in marine waters. Am J Public Health 69:1116–1119CrossRef Gerba CP, Goyal SM, LaBelle RL, Cech I, Bodgan GF (1979) Failure of indicator bacteria to reflect the occurrence of enteroviruses in marine waters. Am J Public Health 69:1116–1119CrossRef
13.
Zurück zum Zitat Solo-gabriele HM, Wolfert MA, Desmarais TR, Palmer CJ (2000) Sources of Escherichia coli in a Coastal Subtropical Environment. Appl Environ Microbiol 66:230–237CrossRef Solo-gabriele HM, Wolfert MA, Desmarais TR, Palmer CJ (2000) Sources of Escherichia coli in a Coastal Subtropical Environment. Appl Environ Microbiol 66:230–237CrossRef
14.
Zurück zum Zitat Lipp EK, Farrah SA, Rose JB (2001) Assessment and impact of microbial fecal pollution and human enteric pathogens in a coastal community. Mar Pollut Bull 42:286–293CrossRef Lipp EK, Farrah SA, Rose JB (2001) Assessment and impact of microbial fecal pollution and human enteric pathogens in a coastal community. Mar Pollut Bull 42:286–293CrossRef
15.
Zurück zum Zitat Byappanahalli MN, Shively DA, Nevers MB, Sadowsky MJ, Whitman RL (2003) Growth and survival of Escherichia coli and enterococci populations in the macro-alga Cladophora (Chlorophyta). FEMS Microbiol Ecol 46:203–211. doi:10.1016/S0168-6496(03)00214-9 Byappanahalli MN, Shively DA, Nevers MB, Sadowsky MJ, Whitman RL (2003) Growth and survival of Escherichia coli and enterococci populations in the macro-alga Cladophora (Chlorophyta). FEMS Microbiol Ecol 46:203–211. doi:10.​1016/​S0168-6496(03)00214-9
16.
Zurück zum Zitat Pote J, Haller L, Kottelat R, Sastre V, Arpagaus P, Wildi W (2009) Persistence and growth of faecal culturable bacterial indicators in water column and sediments of Vidy Bay, Lake Geneva, Switzerland. J Environ Sci (China) 21:62–69CrossRef Pote J, Haller L, Kottelat R, Sastre V, Arpagaus P, Wildi W (2009) Persistence and growth of faecal culturable bacterial indicators in water column and sediments of Vidy Bay, Lake Geneva, Switzerland. J Environ Sci (China) 21:62–69CrossRef
19.
Zurück zum Zitat Scott TM, Rose JB, Jenkins TM, Samuel R, Lukasik J, Farrah SR (2002) Microbial source tracking : current methodology and future directions microbial source tracking : current methodology and future directions. Appl Environ Microbiol 68:5796–5803. doi:10.1128/AEM.68.12.5796 CrossRef Scott TM, Rose JB, Jenkins TM, Samuel R, Lukasik J, Farrah SR (2002) Microbial source tracking : current methodology and future directions microbial source tracking : current methodology and future directions. Appl Environ Microbiol 68:5796–5803. doi:10.​1128/​AEM.​68.​12.​5796 CrossRef
20.
Zurück zum Zitat Simpson J, Santo Domingo J, Reasoner D (2002) Microbial source tracking: state of the science. Environ Sci Technol 36:5279–5288CrossRef Simpson J, Santo Domingo J, Reasoner D (2002) Microbial source tracking: state of the science. Environ Sci Technol 36:5279–5288CrossRef
21.
Zurück zum Zitat EPA (2005) Microbial source tracking guide document. U.S. Environmental Protection Agency, Cincinnati EPA (2005) Microbial source tracking guide document. U.S. Environmental Protection Agency, Cincinnati
22.
Zurück zum Zitat Savichtcheva O, Okabe S (2006) Alternative indicators of fecal pollution: relations with pathogens and conventional indicators, current methodologies for direct pathogen monitoring and future application perspectives. Water Res 40:2463–2476CrossRef Savichtcheva O, Okabe S (2006) Alternative indicators of fecal pollution: relations with pathogens and conventional indicators, current methodologies for direct pathogen monitoring and future application perspectives. Water Res 40:2463–2476CrossRef
23.
24.
Zurück zum Zitat Wu J, Long SC, Das D, Dorner SM (2011) Are microbial indicators and pathogens correlated? A statistical analysis of 40 years of research. J Water Health 9(2):265–278. doi:10.2166/wh.2011.117 CrossRef Wu J, Long SC, Das D, Dorner SM (2011) Are microbial indicators and pathogens correlated? A statistical analysis of 40 years of research. J Water Health 9(2):265–278. doi:10.​2166/​wh.​2011.​117 CrossRef
25.
Zurück zum Zitat Boehm AB, Van De Werfhorst LC, Griffith JF, Holden PA, Jay JA, Shanks OC, Wang D, Weisberg SB (2013) Performance of forty-one microbial source tracking methods: a twenty-seven lab evaluation study. Water Res 47:6812–6828. doi:10.1016/j.watres.2012.12.046 CrossRef Boehm AB, Van De Werfhorst LC, Griffith JF, Holden PA, Jay JA, Shanks OC, Wang D, Weisberg SB (2013) Performance of forty-one microbial source tracking methods: a twenty-seven lab evaluation study. Water Res 47:6812–6828. doi:10.​1016/​j.​watres.​2012.​12.​046 CrossRef
26.
Zurück zum Zitat Harwood VJ, Staley C, Badgley BD, Borges K, Korajkic A (2013) Microbial source tracking markers for detection of fecal contamination in environmental waters: relationships between pathogens and human health outcomes. FEMS Microbiol Rev. doi:10.1111/1574-6976.12031 Harwood VJ, Staley C, Badgley BD, Borges K, Korajkic A (2013) Microbial source tracking markers for detection of fecal contamination in environmental waters: relationships between pathogens and human health outcomes. FEMS Microbiol Rev. doi:10.​1111/​1574-6976.​12031
27.
Zurück zum Zitat Girones R, Ferrús M, Alonso J, Rodriguez-Manzano J, Calgua B, Corrêa A, Hundesa A, Carratala A, Bofill-Mas S (2010) Molecular detection of pathogens in water–the pros and cons of molecular techniques. Water Res 44:4325–4339. doi:10.1016/j.watres.2010.06.030 CrossRef Girones R, Ferrús M, Alonso J, Rodriguez-Manzano J, Calgua B, Corrêa A, Hundesa A, Carratala A, Bofill-Mas S (2010) Molecular detection of pathogens in water–the pros and cons of molecular techniques. Water Res 44:4325–4339. doi:10.​1016/​j.​watres.​2010.​06.​030 CrossRef
28.
Zurück zum Zitat Albinana-Gimenez N, Miagostovich MP, Calgua B, Huguet JM, Matia L, Girones R (2009) Analysis of adenoviruses and polyomaviruses quantified by qPCR as indicators of water quality in source and drinking-water treatment plants. Water Res 43:2011–2019. doi:10.1016/j.watres.2009.01.025 CrossRef Albinana-Gimenez N, Miagostovich MP, Calgua B, Huguet JM, Matia L, Girones R (2009) Analysis of adenoviruses and polyomaviruses quantified by qPCR as indicators of water quality in source and drinking-water treatment plants. Water Res 43:2011–2019. doi:10.​1016/​j.​watres.​2009.​01.​025 CrossRef
29.
Zurück zum Zitat Bofill-Mas S, Albinana-Gimenez N, Clemente-Casares P, Hundesa A, Rodriguez-Manzano J, Allard A, Calvo M, Girones R (2006) Quantification and stability of human adenoviruses and polyomavirus JCPyV in wastewater matrices. Appl Environ Microbiol 72:7894–7896. doi:10.1128/AEM.00965-06 CrossRef Bofill-Mas S, Albinana-Gimenez N, Clemente-Casares P, Hundesa A, Rodriguez-Manzano J, Allard A, Calvo M, Girones R (2006) Quantification and stability of human adenoviruses and polyomavirus JCPyV in wastewater matrices. Appl Environ Microbiol 72:7894–7896. doi:10.​1128/​AEM.​00965-06 CrossRef
30.
Zurück zum Zitat Brady AMG, Gellner TM, Spencer SK, Williston AG, Borchardt MA, Bushon RN, Francy DS, Riddell KR, Stelzer EA (2012) Comparative effectiveness of membrane bioreactors, conventional secondary treatment, and chlorine and UV disinfection to remove microorganisms from municipal waste waters. Water Res 46:4164–4178. doi: 10.1016/j.watres.2012.04.044 Brady AMG, Gellner TM, Spencer SK, Williston AG, Borchardt MA, Bushon RN, Francy DS, Riddell KR, Stelzer EA (2012) Comparative effectiveness of membrane bioreactors, conventional secondary treatment, and chlorine and UV disinfection to remove microorganisms from municipal waste waters. Water Res 46:4164–4178. doi: 10.1016/j.watres.2012.04.044
31.
Zurück zum Zitat Havelaar AH, Furuse K, Hogeboom WM (1986) Bacteriophages and indicator bacteria in human and animal faeces. J Appl Bacteriol 60:255–262 Havelaar AH, Furuse K, Hogeboom WM (1986) Bacteriophages and indicator bacteria in human and animal faeces. J Appl Bacteriol 60:255–262
32.
Zurück zum Zitat Hsu FC, Shieh YS, van Duin J, Beekwilder MJ, Sobsey MD (1995) Genotyping male-specific RNA coliphages by hybridization with oligonucleotide probes. Appl Environ Microbiol 61:3960–3966 Hsu FC, Shieh YS, van Duin J, Beekwilder MJ, Sobsey MD (1995) Genotyping male-specific RNA coliphages by hybridization with oligonucleotide probes. Appl Environ Microbiol 61:3960–3966
33.
Zurück zum Zitat Schaper M, Jofre J, Uys M, Grabow WOK (2002) Distribution of genotypes of F-specific RNA bacteriophages in human and non-human sources of faecal pollution in South Africa and Spain. J Appl Microbiol 92:657–667CrossRef Schaper M, Jofre J, Uys M, Grabow WOK (2002) Distribution of genotypes of F-specific RNA bacteriophages in human and non-human sources of faecal pollution in South Africa and Spain. J Appl Microbiol 92:657–667CrossRef
34.
Zurück zum Zitat Kirs M, Smith DC (2007) Multiplex quantitative real-time reverse transcriptase PCR for F+-specific RNA coliphages: a method for use in microbial source tracking. Appl Environ Microbiol 73:808–814. doi:10.1128/AEM.00399-06 CrossRef Kirs M, Smith DC (2007) Multiplex quantitative real-time reverse transcriptase PCR for F+-specific RNA coliphages: a method for use in microbial source tracking. Appl Environ Microbiol 73:808–814. doi:10.​1128/​AEM.​00399-06 CrossRef
35.
Zurück zum Zitat Kim S-H, Cheon D-S, Kim J-H, Lee D-H, Jheong W-H, Heo Y-J, Chung H-M, Jee Y, Lee J-S (2005) Outbreaks of gastroenteritis that occurred during school excursions in Korea were associated with several waterborne strains of norovirus. J Clin Microbiol 43:4836–4839. doi:10.1128/JCM.43.9.4836 CrossRef Kim S-H, Cheon D-S, Kim J-H, Lee D-H, Jheong W-H, Heo Y-J, Chung H-M, Jee Y, Lee J-S (2005) Outbreaks of gastroenteritis that occurred during school excursions in Korea were associated with several waterborne strains of norovirus. J Clin Microbiol 43:4836–4839. doi:10.​1128/​JCM.​43.​9.​4836 CrossRef
36.
Zurück zum Zitat Chung H, Sobsey MD (1993) Comparative survival of indicator viruses and enteric viruses in seawater and sediment. Water Sci Tech 27:425–428 Chung H, Sobsey MD (1993) Comparative survival of indicator viruses and enteric viruses in seawater and sediment. Water Sci Tech 27:425–428
37.
Zurück zum Zitat Doré WJ, Henshilwood K, Lees DN (2000) Evaluation of F-specific RNA bacteriophage as a candidate human enteric virus indicator for bivalve molluscan shellfish. Appl Environ Microbiol 66:1280–1285CrossRef Doré WJ, Henshilwood K, Lees DN (2000) Evaluation of F-specific RNA bacteriophage as a candidate human enteric virus indicator for bivalve molluscan shellfish. Appl Environ Microbiol 66:1280–1285CrossRef
38.
Zurück zum Zitat Tartera C, Jofre J (1987) Bacteriophages active against Bacteroides fragilis in sewage-polluted waters. Appl Environ Microbiol 53:1632–1637 Tartera C, Jofre J (1987) Bacteriophages active against Bacteroides fragilis in sewage-polluted waters. Appl Environ Microbiol 53:1632–1637
39.
Zurück zum Zitat Gómez-Doñate M, Payán A, Cortés I, Blanch AR, Lucena F, Jofre J, Muniesa M (2011) Isolation of bacteriophage host strains of Bacteroides species suitable for tracking sources of animal faecal pollution in water. Environ Microbiol 13:1622–1631. doi:10.1111/j.1462-2920.2011.02474.x CrossRef Gómez-Doñate M, Payán A, Cortés I, Blanch AR, Lucena F, Jofre J, Muniesa M (2011) Isolation of bacteriophage host strains of Bacteroides species suitable for tracking sources of animal faecal pollution in water. Environ Microbiol 13:1622–1631. doi:10.​1111/​j.​1462-2920.​2011.​02474.​x CrossRef
40.
Zurück zum Zitat Tartera C, Lucena F, Jofre J (1989) Human origin of Bacteroides fragilis bacteriophages present in the environment. Appl Environ Microbiol 55:2696–2701 Tartera C, Lucena F, Jofre J (1989) Human origin of Bacteroides fragilis bacteriophages present in the environment. Appl Environ Microbiol 55:2696–2701
41.
Zurück zum Zitat Puig M, Jofre J, Lucena F, Allard A, Wadell G, Girones R (1994) Detection of adenoviruses and enteroviruses in polluted waters by nested PCR amplification. Appl Environ Microbiol 60:2963–2970 Puig M, Jofre J, Lucena F, Allard A, Wadell G, Girones R (1994) Detection of adenoviruses and enteroviruses in polluted waters by nested PCR amplification. Appl Environ Microbiol 60:2963–2970
42.
Zurück zum Zitat Pina S, Lucena F, Girones R (1998) Viral pollution in the environment and in Shellfish : human adenovirus detection by PCR as an index of human viruses viral pollution in the environment and in Shellfish: human adenovirus detection by PCR as an index of human viruses. Appl Environ Microbiol 64:3376 Pina S, Lucena F, Girones R (1998) Viral pollution in the environment and in Shellfish : human adenovirus detection by PCR as an index of human viruses viral pollution in the environment and in Shellfish: human adenovirus detection by PCR as an index of human viruses. Appl Environ Microbiol 64:3376
43.
Zurück zum Zitat Hernroth B, Conden-Hansson A, Rehnstam-Holm A, Girones R, Allard A (2002) Environmental factors influencing human viral pathogens and their potential indicator organisms in the blue mussel, Mytilus edulis: the first Scandinavian report. Appl Environ Microbiol 68:4523–4533. doi:10.1128/AEM.68.9.4523 CrossRef Hernroth B, Conden-Hansson A, Rehnstam-Holm A, Girones R, Allard A (2002) Environmental factors influencing human viral pathogens and their potential indicator organisms in the blue mussel, Mytilus edulis: the first Scandinavian report. Appl Environ Microbiol 68:4523–4533. doi:10.​1128/​AEM.​68.​9.​4523 CrossRef
44.
Zurück zum Zitat Bofill-Mas S, Pina S, Girones R (2000) Documenting the epidemiologic patterns of polyomaviruses in human populations by studying their presence in urban sewage. Appl Environ Microbiol 66:238–245CrossRef Bofill-Mas S, Pina S, Girones R (2000) Documenting the epidemiologic patterns of polyomaviruses in human populations by studying their presence in urban sewage. Appl Environ Microbiol 66:238–245CrossRef
45.
46.
48.
Zurück zum Zitat Rosario K, Symonds EM, Sinigalliano C, Stewart J, Breitbart M (2009) Pepper mild mottle virus as an indicator of fecal pollution. Appl Environ Microbiol 75:7261–7267. doi:10.1128/AEM.00410-09 CrossRef Rosario K, Symonds EM, Sinigalliano C, Stewart J, Breitbart M (2009) Pepper mild mottle virus as an indicator of fecal pollution. Appl Environ Microbiol 75:7261–7267. doi:10.​1128/​AEM.​00410-09 CrossRef
49.
Zurück zum Zitat Maluquer de Motes C, Clemente-Casares P, Hundesa A, Martín M, Girones R (2004) Detection of bovine and porcine adenoviruses for tracing the source of fecal contamination. Appl Environ Microbiol 70:1448–1454. doi:10.1128/AEM.70.3.1448 CrossRef Maluquer de Motes C, Clemente-Casares P, Hundesa A, Martín M, Girones R (2004) Detection of bovine and porcine adenoviruses for tracing the source of fecal contamination. Appl Environ Microbiol 70:1448–1454. doi:10.​1128/​AEM.​70.​3.​1448 CrossRef
50.
Zurück zum Zitat Wong K, Xagoraraki I (2011) A perspective on the prevalence of DNA enteric virus genomes in anaerobic-digested biological wastes. Environ Monit Assess. doi:10.1007/s10661-011-2316-z Wong K, Xagoraraki I (2011) A perspective on the prevalence of DNA enteric virus genomes in anaerobic-digested biological wastes. Environ Monit Assess. doi:10.​1007/​s10661-011-2316-z
51.
Zurück zum Zitat Hundesa A, Maluquer de Motes C, Bofill-Mas S, Albinana-Gimenez N, Girones R (2006) Identification of human and animal adenoviruses and polyomaviruses for determination of sources of fecal contamination in the environment. Appl Environ Microbiol 72:7886–7893. doi:10.1128/AEM.01090-06 CrossRef Hundesa A, Maluquer de Motes C, Bofill-Mas S, Albinana-Gimenez N, Girones R (2006) Identification of human and animal adenoviruses and polyomaviruses for determination of sources of fecal contamination in the environment. Appl Environ Microbiol 72:7886–7893. doi:10.​1128/​AEM.​01090-06 CrossRef
52.
Zurück zum Zitat Hundesa A, Bofill-Mas S, Maluquer de Motes C, Rodriguez-Manzano J, Bach A, Casas M, Girones R (2010) Development of a quantitative PCR assay for the quantitation of bovine polyomavirus as a microbial source-tracking tool. J Virol Methods 163:385–389. doi:10.1016/j.jviromet.2009.10.029 CrossRef Hundesa A, Bofill-Mas S, Maluquer de Motes C, Rodriguez-Manzano J, Bach A, Casas M, Girones R (2010) Development of a quantitative PCR assay for the quantitation of bovine polyomavirus as a microbial source-tracking tool. J Virol Methods 163:385–389. doi:10.​1016/​j.​jviromet.​2009.​10.​029 CrossRef
53.
Zurück zum Zitat Ley V, Higgins J, Fayer R (2002) Bovine enteroviruses as indicators of fecal contamination. Appl Environ Microbiol 68:3455–3461CrossRef Ley V, Higgins J, Fayer R (2002) Bovine enteroviruses as indicators of fecal contamination. Appl Environ Microbiol 68:3455–3461CrossRef
54.
Zurück zum Zitat Jiménez-Clavero MA, Escribano-Romero E, Mansilla C, Gómez N, Córdoba L, Roblas N, Ponz F, Ley V, Sáiz J-C (2005) Survey of bovine enterovirus in biological and environmental samples by a highly sensitive real-time reverse transcription-PCR. Appl Environ Microbiol 71:3536–3543. doi:10.1128/AEM.71.7.3536-3543.2005 CrossRef Jiménez-Clavero MA, Escribano-Romero E, Mansilla C, Gómez N, Córdoba L, Roblas N, Ponz F, Ley V, Sáiz J-C (2005) Survey of bovine enterovirus in biological and environmental samples by a highly sensitive real-time reverse transcription-PCR. Appl Environ Microbiol 71:3536–3543. doi:10.​1128/​AEM.​71.​7.​3536-3543.​2005 CrossRef
55.
Zurück zum Zitat Hundesa A, Maluquer de Motes C, Albinana-Gimenez N, Rodriguez-Manzano J, Bofill-Mas S, Suñen E, Rosina Girones R (2009) Development of a qPCR assay for the quantification of porcine adenoviruses as an MST tool for swine fecal contamination in the environment. J Virol Methods 158:130–135. doi:10.1016/j.jviromet.2009.02.006 CrossRef Hundesa A, Maluquer de Motes C, Albinana-Gimenez N, Rodriguez-Manzano J, Bofill-Mas S, Suñen E, Rosina Girones R (2009) Development of a qPCR assay for the quantification of porcine adenoviruses as an MST tool for swine fecal contamination in the environment. J Virol Methods 158:130–135. doi:10.​1016/​j.​jviromet.​2009.​02.​006 CrossRef
56.
Zurück zum Zitat Viancelli A, Garcia LAT, Kunz A, Steinmetz R, Esteves PA, Barardi CRM (2012) Research in Veterinary Science Detection of circoviruses and porcine adenoviruses in water samples collected from swine manure treatment systems. Res Vet Sci 93:538–543. doi:10.1016/j.rvsc.2011.07.022 CrossRef Viancelli A, Garcia LAT, Kunz A, Steinmetz R, Esteves PA, Barardi CRM (2012) Research in Veterinary Science Detection of circoviruses and porcine adenoviruses in water samples collected from swine manure treatment systems. Res Vet Sci 93:538–543. doi:10.​1016/​j.​rvsc.​2011.​07.​022 CrossRef
57.
Zurück zum Zitat Jiménez-Clavero MA, Fernández C, Ortiz JA, Pro J, Carbonell G, Tarazona JV, Roblas N, Ley V (2003) Teschoviruses as indicators of porcine fecal contamination of surface water. Appl Environ Microbiol 69:6311–6315. doi:10.1128/AEM.69.10.6311 CrossRef Jiménez-Clavero MA, Fernández C, Ortiz JA, Pro J, Carbonell G, Tarazona JV, Roblas N, Ley V (2003) Teschoviruses as indicators of porcine fecal contamination of surface water. Appl Environ Microbiol 69:6311–6315. doi:10.​1128/​AEM.​69.​10.​6311 CrossRef
58.
Zurück zum Zitat Rusiñol M, Carratalà A, Hundesa A, Bach A, Kern A, Vantarakis A, Girones R, Bofill-Mas S (2013) Description of a novel viral tool to identify and quantify ovine faecal pollution in the environment. Sci Total Environ 458–460:355–360. doi:10.1016/j.scitotenv.2013.04.028 CrossRef Rusiñol M, Carratalà A, Hundesa A, Bach A, Kern A, Vantarakis A, Girones R, Bofill-Mas S (2013) Description of a novel viral tool to identify and quantify ovine faecal pollution in the environment. Sci Total Environ 458–460:355–360. doi:10.​1016/​j.​scitotenv.​2013.​04.​028 CrossRef
59.
Zurück zum Zitat Carratalà A, Rusiñol M, Hundesa A, Biarnes M, Rodriguez-Manzano J, Vantarakis A, Kern A, Sunen E, Girones R, Bofill-Mas S (2012) A novel tool for specific detection and quantification of chicken/Turkey parvoviruses to trace poultry fecal contamination in the environment. Appl Environ Microbiol 78:7496–7499. doi:10.1128/AEM.01283-12 CrossRef Carratalà A, Rusiñol M, Hundesa A, Biarnes M, Rodriguez-Manzano J, Vantarakis A, Kern A, Sunen E, Girones R, Bofill-Mas S (2012) A novel tool for specific detection and quantification of chicken/Turkey parvoviruses to trace poultry fecal contamination in the environment. Appl Environ Microbiol 78:7496–7499. doi:10.​1128/​AEM.​01283-12 CrossRef
60.
Zurück zum Zitat Cantalupo PG, Calgua B, Zhao G, Hundesa A, Wier AD, Katz JP, Grabe M, Hendrix RW, Girones R, Wang D, Pipas JM (2011) Raw sewage harbors diverse viral populations. mBio 2:e00180–11–e00180–11. doi:10.1128/mBio.00180-11.Editor Cantalupo PG, Calgua B, Zhao G, Hundesa A, Wier AD, Katz JP, Grabe M, Hendrix RW, Girones R, Wang D, Pipas JM (2011) Raw sewage harbors diverse viral populations. mBio 2:e00180–11–e00180–11. doi:10.​1128/​mBio.​00180-11.​Editor
61.
Zurück zum Zitat Bofill-Mas S, Formiga-cruz M, Clemente-casares P, Calafell F, Girones R (2001) Potential Transmission of human polyomaviruses through the gastrointestinal tract after exposure to virions or viral DNA. J Virol 75:10290–10299. doi:10.1128/JVI.75.21.10290 Bofill-Mas S, Formiga-cruz M, Clemente-casares P, Calafell F, Girones R (2001) Potential Transmission of human polyomaviruses through the gastrointestinal tract after exposure to virions or viral DNA. J Virol 75:10290–10299. doi:10.​1128/​JVI.​75.​21.​10290
62.
Zurück zum Zitat Calgua B, Carratalà A, Guerrero-Latorre L, de Abreu CA, Kohn T, Sommer R, Girones R (2014) UVC inactivation of dsDNA and ssRNA viruses in water: UV fluences and a qPCR-based approach to evaluate decay on viral infectivity. Food Environ Virol. doi:10.1007/s12560-014-9157-1 Calgua B, Carratalà A, Guerrero-Latorre L, de Abreu CA, Kohn T, Sommer R, Girones R (2014) UVC inactivation of dsDNA and ssRNA viruses in water: UV fluences and a qPCR-based approach to evaluate decay on viral infectivity. Food Environ Virol. doi:10.​1007/​s12560-014-9157-1
63.
Zurück zum Zitat Wyn-jones AP, Carducci A, Cook N, D’Agostino M, Divizia M, Fleischer J, Gantzer C, Gawler A, Girones R, Höller C, de Roda Husman AM, Kay D, Kozyra I, López-Pila J, Muscillo M, Nascimento MSJ, Papageorgiou G, Rutjes S, Sellwood J, Szewzyk R, Wyer M, Agostino MD, Ho C, Maria A, Husman DR, Sa M, Lo J (2011) Surveillance of adenoviruses and noroviruses in European recreational waters. Water Res 5:1025–1038. doi:10.1016/j.watres.2010.10.015 CrossRef Wyn-jones AP, Carducci A, Cook N, D’Agostino M, Divizia M, Fleischer J, Gantzer C, Gawler A, Girones R, Höller C, de Roda Husman AM, Kay D, Kozyra I, López-Pila J, Muscillo M, Nascimento MSJ, Papageorgiou G, Rutjes S, Sellwood J, Szewzyk R, Wyer M, Agostino MD, Ho C, Maria A, Husman DR, Sa M, Lo J (2011) Surveillance of adenoviruses and noroviruses in European recreational waters. Water Res 5:1025–1038. doi:10.​1016/​j.​watres.​2010.​10.​015 CrossRef
64.
Zurück zum Zitat Jones MS, Harrach B, Ganac RD, Gozum MMA, Dela Cruz WP, Riedel B, Pan C, Delwart EL, Schnurr DP (2007) New adenovirus species found in a patient presenting with gastroenteritis. J Virol 81:5978–5984. doi:10.1128/JVI.02650-06 CrossRef Jones MS, Harrach B, Ganac RD, Gozum MMA, Dela Cruz WP, Riedel B, Pan C, Delwart EL, Schnurr DP (2007) New adenovirus species found in a patient presenting with gastroenteritis. J Virol 81:5978–5984. doi:10.​1128/​JVI.​02650-06 CrossRef
65.
Zurück zum Zitat Robinson CM, Singh G, Henquell C, Walsh MP, Peigue-Lafeuille H, Seto D, Jones MS, Dyer DW, Chodosh J (2011) Computational analysis and identification of an emergent human adenovirus pathogen implicated in a respiratory fatality. Virology 409:141–147. doi:10.1016/j.virol.2010.10.020 CrossRef Robinson CM, Singh G, Henquell C, Walsh MP, Peigue-Lafeuille H, Seto D, Jones MS, Dyer DW, Chodosh J (2011) Computational analysis and identification of an emergent human adenovirus pathogen implicated in a respiratory fatality. Virology 409:141–147. doi:10.​1016/​j.​virol.​2010.​10.​020 CrossRef
66.
Zurück zum Zitat Walsh MP, Seto J, Liu EB, Dehghan S, Hudson NR, Lukashev AN, Ivanova O, Chodosh J, Dyer DW, Jones MS, Seto D (2011) Computational analysis of two species C human adenoviruses provides evidence of a novel virus. J Clin Microbiol 49:3482–3490. doi:10.1128/JCM.00156-11 CrossRef Walsh MP, Seto J, Liu EB, Dehghan S, Hudson NR, Lukashev AN, Ivanova O, Chodosh J, Dyer DW, Jones MS, Seto D (2011) Computational analysis of two species C human adenoviruses provides evidence of a novel virus. J Clin Microbiol 49:3482–3490. doi:10.​1128/​JCM.​00156-11 CrossRef
67.
Zurück zum Zitat Buller CR, Moxley RA (1988) Natural infection of porcine ileal dome M cells with rotavirus and enteric adenovirus. Vet Pathol 25:516–517CrossRef Buller CR, Moxley RA (1988) Natural infection of porcine ileal dome M cells with rotavirus and enteric adenovirus. Vet Pathol 25:516–517CrossRef
68.
Zurück zum Zitat Adrian T, Schäfer G, Cooney MK, Fox JP, Wigand R (1988) Persistent enteral infections with adenovirus types 1 and 2 in infants: no evidence of reinfection. Epidemiol Infect 101:503–509CrossRef Adrian T, Schäfer G, Cooney MK, Fox JP, Wigand R (1988) Persistent enteral infections with adenovirus types 1 and 2 in infants: no evidence of reinfection. Epidemiol Infect 101:503–509CrossRef
69.
Zurück zum Zitat Sharp IR, Wadell G (1995) Adenoviruses. In: Zuckerman AJ, Banatvala JE, Pattison JR (eds) Principles and practice of clinical virology, 3rd edn. Wiley, New York, pp 287–308 Sharp IR, Wadell G (1995) Adenoviruses. In: Zuckerman AJ, Banatvala JE, Pattison JR (eds) Principles and practice of clinical virology, 3rd edn. Wiley, New York, pp 287–308
70.
Zurück zum Zitat Formiga-Cruz M, Tofiño-Quesada G, Bofill-Mas S, Lees DN, Henshilwood K, Allard a K, Conden-Hansson A-C, Hernroth BE, Vantarakis A, Tsibouxi A, Papapetropoulou M, Furones MD, Girones R (2002) Distribution of human virus contamination in shellfish from different growing areas in Greece, Spain, Sweden, and the United Kingdom. Appl Environ Microbiol 68:5990–5998. doi:10.1128/AEM.68.12.5990 Formiga-Cruz M, Tofiño-Quesada G, Bofill-Mas S, Lees DN, Henshilwood K, Allard a K, Conden-Hansson A-C, Hernroth BE, Vantarakis A, Tsibouxi A, Papapetropoulou M, Furones MD, Girones R (2002) Distribution of human virus contamination in shellfish from different growing areas in Greece, Spain, Sweden, and the United Kingdom. Appl Environ Microbiol 68:5990–5998. doi:10.​1128/​AEM.​68.​12.​5990
71.
Zurück zum Zitat Bofill-Mas S, Rodriguez-Manzano J, Calgua B, Carratala A, Girones R (2010) Newly described human polyomaviruses Merkel cell, KI and WU are present in urban sewage and may represent potential environmental contaminants. Virol J 7:141. doi:10.1186/1743-422X-7-141 CrossRef Bofill-Mas S, Rodriguez-Manzano J, Calgua B, Carratala A, Girones R (2010) Newly described human polyomaviruses Merkel cell, KI and WU are present in urban sewage and may represent potential environmental contaminants. Virol J 7:141. doi:10.​1186/​1743-422X-7-141 CrossRef
72.
Zurück zum Zitat Rusiñol M, Fernandez-Cassi X, Hundesa A, Vieira C, Kern A, Eriksson I, Ziros P, Kay D, Miagostovich M, Vargha M, Allard A, Vantarakis A, Wyn-Jones P, Bofill-Mas S, Girones R (2014) Application of human and animal viral microbial source tracking tools in fresh and marine waters from five different geographical areas. Water Res 59:119–129. doi:10.1016/j.watres.2014.04.013 CrossRef Rusiñol M, Fernandez-Cassi X, Hundesa A, Vieira C, Kern A, Eriksson I, Ziros P, Kay D, Miagostovich M, Vargha M, Allard A, Vantarakis A, Wyn-Jones P, Bofill-Mas S, Girones R (2014) Application of human and animal viral microbial source tracking tools in fresh and marine waters from five different geographical areas. Water Res 59:119–129. doi:10.​1016/​j.​watres.​2014.​04.​013 CrossRef
73.
Zurück zum Zitat Rodriguez-Manzano J, Hundesa A, Calgua B, Carratala A, Maluquer de Motes C, Rusiñol M, Moresco V, Ramos AP, Martínez-Marca F, Calvo M, Monte Barardi CR, Girones R, Bofill-Mas S (2013) Adenovirus and norovirus contaminants in commercially distributed shellfish. Food Environ Virol. doi:10.1007/s12560-013-9133-1 Rodriguez-Manzano J, Hundesa A, Calgua B, Carratala A, Maluquer de Motes C, Rusiñol M, Moresco V, Ramos AP, Martínez-Marca F, Calvo M, Monte Barardi CR, Girones R, Bofill-Mas S (2013) Adenovirus and norovirus contaminants in commercially distributed shellfish. Food Environ Virol. doi:10.​1007/​s12560-013-9133-1
75.
Zurück zum Zitat Brodsky I, Rowe W, Hartley J, Lane W (1959) Studies of mouse polyoma virus infection II Virus stability. J Exp Med 109:439–447CrossRef Brodsky I, Rowe W, Hartley J, Lane W (1959) Studies of mouse polyoma virus infection II Virus stability. J Exp Med 109:439–447CrossRef
76.
77.
Zurück zum Zitat deAbreu CA, Carratalà A, Calvo M, Barardi CRM, Bofill-Mas S, Girones R, de Abreu CA (2012) Comparative inactivation of murine norovirus, human adenovirus, and human JC polyomavirus by chlorine in seawater. Appl Environ Microbiol 78:6450–6457. doi:10.1128/AEM.01059-12 CrossRef deAbreu CA, Carratalà A, Calvo M, Barardi CRM, Bofill-Mas S, Girones R, de Abreu CA (2012) Comparative inactivation of murine norovirus, human adenovirus, and human JC polyomavirus by chlorine in seawater. Appl Environ Microbiol 78:6450–6457. doi:10.​1128/​AEM.​01059-12 CrossRef
78.
Zurück zum Zitat Girones R, Carratalà A, Calgua B, Calvo M, Rodriguez-Manzano J, Emerson S (2014) Chlorine inactivation of hepatitis E virus and human adenovirus 2 in water. J Water Health 12:436–442. doi:10.2166/wh.2014.027 CrossRef Girones R, Carratalà A, Calgua B, Calvo M, Rodriguez-Manzano J, Emerson S (2014) Chlorine inactivation of hepatitis E virus and human adenovirus 2 in water. J Water Health 12:436–442. doi:10.​2166/​wh.​2014.​027 CrossRef
79.
Zurück zum Zitat Gardner SD, Field AM, Coleman DV, Hulme B (1971) New human papovavirus (B.K.) isolated from urine after renal transplantation. Lancet 1:1253–1257CrossRef Gardner SD, Field AM, Coleman DV, Hulme B (1971) New human papovavirus (B.K.) isolated from urine after renal transplantation. Lancet 1:1253–1257CrossRef
80.
Zurück zum Zitat Padgett BL, Walker DL, ZuRhein GM, Eckroade RJ, Dessel BH (1971) Cultivation of papova-like virus from human brain with progressive multifocal leucoencephalopathy. Lancet 1:1257–1260CrossRef Padgett BL, Walker DL, ZuRhein GM, Eckroade RJ, Dessel BH (1971) Cultivation of papova-like virus from human brain with progressive multifocal leucoencephalopathy. Lancet 1:1257–1260CrossRef
81.
Zurück zum Zitat Berger JR, Houff SA, Major EO (2009) Monoclonal antibodies and progressive multifocal leukoencephalopathy. MAbs 1:583–589CrossRef Berger JR, Houff SA, Major EO (2009) Monoclonal antibodies and progressive multifocal leukoencephalopathy. MAbs 1:583–589CrossRef
82.
Zurück zum Zitat Yousry TA, Major EO, Ryschkewitsch C, Fahle G, Fischer S, Hou J, Curfman B, Miszkiel K, Mueller-Lenke N, Sanchez E, Barkhof F, Radue E-W, Jäger HR, Clifford DB (2006) Evaluation of patients treated with natalizumab for progressive multifocal leukoencephalopathy. N Engl J Med 354:924–933. doi:10.1056/NEJMoa054693 CrossRef Yousry TA, Major EO, Ryschkewitsch C, Fahle G, Fischer S, Hou J, Curfman B, Miszkiel K, Mueller-Lenke N, Sanchez E, Barkhof F, Radue E-W, Jäger HR, Clifford DB (2006) Evaluation of patients treated with natalizumab for progressive multifocal leukoencephalopathy. N Engl J Med 354:924–933. doi:10.​1056/​NEJMoa054693 CrossRef
83.
Zurück zum Zitat Kitamura T, Aso Y, Kuniyoshi N, Hara K, Yogo Y (1990) High incidence of urinary JC virus excretion in nonimmunosuppressed older patients. J Infect Dis 161:1128–1133CrossRef Kitamura T, Aso Y, Kuniyoshi N, Hara K, Yogo Y (1990) High incidence of urinary JC virus excretion in nonimmunosuppressed older patients. J Infect Dis 161:1128–1133CrossRef
84.
Zurück zum Zitat Koralnik IJ, Boden D, Mai VX, Lord CI, Letvin NL (1999) JC virus DNA load in patients with and without progressive multifocal leukoencephalopathy. Neurology 52:253–260CrossRef Koralnik IJ, Boden D, Mai VX, Lord CI, Letvin NL (1999) JC virus DNA load in patients with and without progressive multifocal leukoencephalopathy. Neurology 52:253–260CrossRef
85.
Zurück zum Zitat Weber T (1997) Molecular epidemiology and emerging infectious diseases of the nervous system. J Neurovirol 3(Suppl 1):S46–S49 Weber T (1997) Molecular epidemiology and emerging infectious diseases of the nervous system. J Neurovirol 3(Suppl 1):S46–S49
86.
Zurück zum Zitat Albinana-Gimenez N, Clemente-casares P (2006) Distribution of human polyoma-viruses, adenoviruses, and hepatitis E virus in the environment and in a drinking-water treatment plant. Environ Sci Technol 40:7416–7422CrossRef Albinana-Gimenez N, Clemente-casares P (2006) Distribution of human polyoma-viruses, adenoviruses, and hepatitis E virus in the environment and in a drinking-water treatment plant. Environ Sci Technol 40:7416–7422CrossRef
87.
Zurück zum Zitat Norja P, Hedman L, Kantola K, Kemppainen K, Suvilehto J, Pitkäranta A, Aaltonen L-M, Seppänen M, Hedman K, Söderlund-Venermo M (2012) Occurrence of human bocaviruses and parvovirus 4 in solid tissues. J Med Virol 84:1267–1273. doi:10.1002/jmv.23335 CrossRef Norja P, Hedman L, Kantola K, Kemppainen K, Suvilehto J, Pitkäranta A, Aaltonen L-M, Seppänen M, Hedman K, Söderlund-Venermo M (2012) Occurrence of human bocaviruses and parvovirus 4 in solid tissues. J Med Virol 84:1267–1273. doi:10.​1002/​jmv.​23335 CrossRef
88.
Zurück zum Zitat Väisänen E, Kuisma I, Phan TG, Delwart E, Lappalainen M, Tarkka E, Hedman K, Söderlund-Venermo M (2014) Bufavirus in feces of patients with gastroenteritis, Finland. Emerg Infect Dis 20:1077–1080. doi:10.3201/eid2006.131674 CrossRef Väisänen E, Kuisma I, Phan TG, Delwart E, Lappalainen M, Tarkka E, Hedman K, Söderlund-Venermo M (2014) Bufavirus in feces of patients with gastroenteritis, Finland. Emerg Infect Dis 20:1077–1080. doi:10.​3201/​eid2006.​131674 CrossRef
89.
Zurück zum Zitat Nath Srivastava R, Lund E (1980) The stability of bovine parvovirus and its possible use as an indicator for the persistence of enteric viruses. Water Res 14:1017–1021. doi:10.1016/0043-1354(80)90146-3 Nath Srivastava R, Lund E (1980) The stability of bovine parvovirus and its possible use as an indicator for the persistence of enteric viruses. Water Res 14:1017–1021. doi:10.​1016/​0043-1354(80)90146-3
92.
Zurück zum Zitat Blinkova O, Rosario K, Li L, Kapoor A, Slikas B, Bernardin F, Breitbart M, Delwart E (2009) Frequent detection of highly diverse variants of cardiovirus, cosavirus, bocavirus, and circovirus in sewage samples collected in the United States. J Clin Microbiol 47:3507–3513. doi:10.1128/JCM.01062-09 CrossRef Blinkova O, Rosario K, Li L, Kapoor A, Slikas B, Bernardin F, Breitbart M, Delwart E (2009) Frequent detection of highly diverse variants of cardiovirus, cosavirus, bocavirus, and circovirus in sewage samples collected in the United States. J Clin Microbiol 47:3507–3513. doi:10.​1128/​JCM.​01062-09 CrossRef
93.
Zurück zum Zitat Bofill-Mas S, Rusiñol M, Fernandez-Cassi X, Carratalà A, Hundesa A, Girones R (2013) Quantification of human and animal viruses to differentiate the origin of the fecal contamination present in environmental samples. BioMed Res Int 2013:192089. doi:10.1155/2013/192089 CrossRef Bofill-Mas S, Rusiñol M, Fernandez-Cassi X, Carratalà A, Hundesa A, Girones R (2013) Quantification of human and animal viruses to differentiate the origin of the fecal contamination present in environmental samples. BioMed Res Int 2013:192089. doi:10.​1155/​2013/​192089 CrossRef
94.
96.
Zurück zum Zitat Haramoto E, Katayama H, Oguma K, Ohgaki S (2005) Application of cation-coated filter method to detection of noroviruses, enteroviruses, adenoviruses, and torque teno viruses in the Tamagawa River in Japan. Appl Environ Microbiol 71:2403–2411. doi:10.1128/AEM.71.5.2403 CrossRef Haramoto E, Katayama H, Oguma K, Ohgaki S (2005) Application of cation-coated filter method to detection of noroviruses, enteroviruses, adenoviruses, and torque teno viruses in the Tamagawa River in Japan. Appl Environ Microbiol 71:2403–2411. doi:10.​1128/​AEM.​71.​5.​2403 CrossRef
98.
Zurück zum Zitat Heim A, Ebnet C, Harste G, Pring-Akerblom P (2003) Rapid and quantitative detection of human adenovirus DNA by real-time PCR. J Med Virol 70:228–239. doi:10.1002/jmv.10382 CrossRef Heim A, Ebnet C, Harste G, Pring-Akerblom P (2003) Rapid and quantitative detection of human adenovirus DNA by real-time PCR. J Med Virol 70:228–239. doi:10.​1002/​jmv.​10382 CrossRef
99.
Zurück zum Zitat Hamza IA, Jurzik L, Stang A, Sure K, Uberla K, Wilhelm M (2009) Detection of human viruses in rivers of a densly-populated area in Germany using a virus adsorption elution method optimized for PCR analyses. Water Res 43:2657–2668. doi:10.1016/j.watres.2009.03.020 CrossRef Hamza IA, Jurzik L, Stang A, Sure K, Uberla K, Wilhelm M (2009) Detection of human viruses in rivers of a densly-populated area in Germany using a virus adsorption elution method optimized for PCR analyses. Water Res 43:2657–2668. doi:10.​1016/​j.​watres.​2009.​03.​020 CrossRef
100.
101.
Zurück zum Zitat Bofill-Mas S, Hundesa A, Calgua B, Rusiñol M, Maluquer de Motes C, Girones R (2011) Cost-effective method for microbial source tracking using specific human and animal viruses. J Vis Exp 58:2820. doi:10.3791/2820 Bofill-Mas S, Hundesa A, Calgua B, Rusiñol M, Maluquer de Motes C, Girones R (2011) Cost-effective method for microbial source tracking using specific human and animal viruses. J Vis Exp 58:2820. doi:10.​3791/​2820
103.
104.
Zurück zum Zitat Rigotto C, Victoria M, Moresco V, Kolesnikovas CK, Corre AA, Miagostovich MP (2010) Assessment of adenovirus, hepatitis A virus and rotavirus presence in environmental samples in Florianopolis, South. J Appl Microbiol. doi:10.1111/j.1365-2672.2010.04827.x Rigotto C, Victoria M, Moresco V, Kolesnikovas CK, Corre AA, Miagostovich MP (2010) Assessment of adenovirus, hepatitis A virus and rotavirus presence in environmental samples in Florianopolis, South. J Appl Microbiol. doi:10.​1111/​j.​1365-2672.​2010.​04827.​x
106.
Zurück zum Zitat Calgua B, Barardi C, Bofill-Mas S, Rodriguez-Manzano J, Girones R (2011) Detection and quantitation of infectious human adenoviruses and JC polyomaviruses in water by immunofluorescence assay. J Virol Methods 171:1–7. doi:10.1016/j.jviromet.2010.09.013 CrossRef Calgua B, Barardi C, Bofill-Mas S, Rodriguez-Manzano J, Girones R (2011) Detection and quantitation of infectious human adenoviruses and JC polyomaviruses in water by immunofluorescence assay. J Virol Methods 171:1–7. doi:10.​1016/​j.​jviromet.​2010.​09.​013 CrossRef
107.
Zurück zum Zitat Gibson KE, Opryszko MC, Schissler JT, Guo Y, Schwab KJ (2011) Evaluation of human enteric viruses in surface water and drinking water resources in southern Ghana. Am J Trop Med Hyg 84:20–29. doi:10.4269/ajtmh.2011.10-0389 CrossRef Gibson KE, Opryszko MC, Schissler JT, Guo Y, Schwab KJ (2011) Evaluation of human enteric viruses in surface water and drinking water resources in southern Ghana. Am J Trop Med Hyg 84:20–29. doi:10.​4269/​ajtmh.​2011.​10-0389 CrossRef
108.
Zurück zum Zitat Guerrero-Latorre L, Carratala A, Rodriguez-Manzano J, Calgua B, Hundesa A, Girones R (2011) Occurrence of water-borne enteric viruses in two settlements based in Eastern Chad: analysis of hepatitis E virus, hepatitis A virus and human adenovirus in water sources. J Water Health 9:515. doi:10.2166/wh.2011.126.Occurrence CrossRef Guerrero-Latorre L, Carratala A, Rodriguez-Manzano J, Calgua B, Hundesa A, Girones R (2011) Occurrence of water-borne enteric viruses in two settlements based in Eastern Chad: analysis of hepatitis E virus, hepatitis A virus and human adenovirus in water sources. J Water Health 9:515. doi:10.​2166/​wh.​2011.​126.​Occurrence CrossRef
110.
Zurück zum Zitat Kokkinos PA, Ziros PG, Mpalasopoulou A, Galanis A, Vantarakis A (2011) Molecular detection of multiple viral targets in untreated urban sewage from Greece. Virol J 8:195. doi:10.1186/1743-422X-8-195 Kokkinos PA, Ziros PG, Mpalasopoulou A, Galanis A, Vantarakis A (2011) Molecular detection of multiple viral targets in untreated urban sewage from Greece. Virol J 8:195. doi:10.​1186/​1743-422X-8-195
111.
Zurück zum Zitat Barardi CRM, Viancelli A, Rigotto C, Pilotto MR, Garcia LA. T, Kunz A, Esteves PA (2012) Surveillance of human and swine adenovirus, human norovirus and swine circovirus in water samples in Santa Catarina, Brazil. J Water Health 10:445–52. doi:10.2166/wh.2012.190 Barardi CRM, Viancelli A, Rigotto C, Pilotto MR, Garcia LA. T, Kunz A, Esteves PA (2012) Surveillance of human and swine adenovirus, human norovirus and swine circovirus in water samples in Santa Catarina, Brazil. J Water Health 10:445–52. doi:10.2166/wh.2012.190
112.
Zurück zum Zitat Fongaro G, Nascimento MA, Viancelli A, Tonetta D, Petrucio MM, Barardi CRM (2012) Surveillance of human viral contamination and physicochemical profiles in a surface water lagoon. Water Sci Technol 66:2682–2687. doi:10.2166/wst.2012.504 CrossRef Fongaro G, Nascimento MA, Viancelli A, Tonetta D, Petrucio MM, Barardi CRM (2012) Surveillance of human viral contamination and physicochemical profiles in a surface water lagoon. Water Sci Technol 66:2682–2687. doi:10.​2166/​wst.​2012.​504 CrossRef
113.
Zurück zum Zitat Rodriguez-Manzano J, Alonso JL, Ferrús MA, Moreno Y, Amorós I, Calgua B, Hundesa A, Guerrero-Latorre L, Carratala A, Rusiñol M, Girones R (2012) Standard and new faecal indicators and pathogens in sewage treatment plants, microbiological parameters for improving the control of reclaimed water. Water Sci Technol 66:2517–2523. doi:10.2166/wst.2012.233 CrossRef Rodriguez-Manzano J, Alonso JL, Ferrús MA, Moreno Y, Amorós I, Calgua B, Hundesa A, Guerrero-Latorre L, Carratala A, Rusiñol M, Girones R (2012) Standard and new faecal indicators and pathogens in sewage treatment plants, microbiological parameters for improving the control of reclaimed water. Water Sci Technol 66:2517–2523. doi:10.​2166/​wst.​2012.​233 CrossRef
114.
Zurück zum Zitat Fumian TM, Vieira CB, Leite JPG, Miagostovich MP (2013) Assessment of burden of virus agents in an urban sewage treatment plant in Rio de Janeiro, Brazil. J Water Health 11:110–119. doi:10.2166/wh.2012.123 CrossRef Fumian TM, Vieira CB, Leite JPG, Miagostovich MP (2013) Assessment of burden of virus agents in an urban sewage treatment plant in Rio de Janeiro, Brazil. J Water Health 11:110–119. doi:10.​2166/​wh.​2012.​123 CrossRef
115.
116.
Zurück zum Zitat Katukiza AY, Temanu H, Chung JW, Foppen JWA, Lens PNL (2013) Genomic copy concentrations of selected waterborne viruses in a slum environment in Kampala, Uganda. J Water Health 11:358–370. doi:10.2166/wh.2013.184 CrossRef Katukiza AY, Temanu H, Chung JW, Foppen JWA, Lens PNL (2013) Genomic copy concentrations of selected waterborne viruses in a slum environment in Kampala, Uganda. J Water Health 11:358–370. doi:10.​2166/​wh.​2013.​184 CrossRef
117.
Zurück zum Zitat Sidhu JPS, Ahmed W, Gernjak W, Aryal R, McCarthy D, Palmer A, Kolotelo P, Toze S (2013) Sewage pollution in urban stormwater runoff as evident from the widespread presence of multiple microbial and chemical source tracking markers. Sci Total Environ 463–464:488–496. doi:10.1016/j.scitotenv.2013.06.020 CrossRef Sidhu JPS, Ahmed W, Gernjak W, Aryal R, McCarthy D, Palmer A, Kolotelo P, Toze S (2013) Sewage pollution in urban stormwater runoff as evident from the widespread presence of multiple microbial and chemical source tracking markers. Sci Total Environ 463–464:488–496. doi:10.​1016/​j.​scitotenv.​2013.​06.​020 CrossRef
119.
Zurück zum Zitat Ye XXY, Ming X, Zhang YLY, Xiao WQW, Huang XN, Cao YG, Gu KD (2012) Real-time PCR detection of enteric viruses in source water and treated drinking water in Wuhan, China. Curr Microbiol 65:244–253. doi:10.1007/s00284-012-0152-1 CrossRef Ye XXY, Ming X, Zhang YLY, Xiao WQW, Huang XN, Cao YG, Gu KD (2012) Real-time PCR detection of enteric viruses in source water and treated drinking water in Wuhan, China. Curr Microbiol 65:244–253. doi:10.​1007/​s00284-012-0152-1 CrossRef
121.
Zurück zum Zitat McQuaig SM, Scott TM, Lukasik JO, Paul JH, Harwood VJ (2009) Quantification of human polyomaviruses JC Virus and BK Virus by TaqMan quantitative PCR and comparison to other water quality indicators in water and fecal samples. Appl Environ Microbiol 75:3379–3388. doi:10.1128/AEM.02302-08 CrossRef McQuaig SM, Scott TM, Lukasik JO, Paul JH, Harwood VJ (2009) Quantification of human polyomaviruses JC Virus and BK Virus by TaqMan quantitative PCR and comparison to other water quality indicators in water and fecal samples. Appl Environ Microbiol 75:3379–3388. doi:10.​1128/​AEM.​02302-08 CrossRef
122.
Zurück zum Zitat Biel SS, Held TK, Landt O, Niedrig M, Gelderblom HR, Siegert W, Nitsche A, Koch-institut R (2000) Rapid quantification and differentiation of human polyomavirus DNA in undiluted urine from patients after bone marrow transplantation. J Clin Microbiol 38:3689–3695 Biel SS, Held TK, Landt O, Niedrig M, Gelderblom HR, Siegert W, Nitsche A, Koch-institut R (2000) Rapid quantification and differentiation of human polyomavirus DNA in undiluted urine from patients after bone marrow transplantation. J Clin Microbiol 38:3689–3695
123.
Zurück zum Zitat Abdelzaher AM, Wright ME, Ortega C, Solo-Gabriele HM, Miller G, Elmir S, Newman X, Shih P, Bonilla JA, Bonilla TD, Palmer CJ, Scott T, Lukasik J, Harwood VJ, McQuaig S, Sinigalliano C, Gidley M, Plano LRW, Zhu X, Wang JD, Fleming LE (2010) Presence of pathogens and indicator microbes at a non-point source subtropical recreational marine beach. Appl Environ Microbiol 76:724–732. doi:10.1128/AEM.02127-09 CrossRef Abdelzaher AM, Wright ME, Ortega C, Solo-Gabriele HM, Miller G, Elmir S, Newman X, Shih P, Bonilla JA, Bonilla TD, Palmer CJ, Scott T, Lukasik J, Harwood VJ, McQuaig S, Sinigalliano C, Gidley M, Plano LRW, Zhu X, Wang JD, Fleming LE (2010) Presence of pathogens and indicator microbes at a non-point source subtropical recreational marine beach. Appl Environ Microbiol 76:724–732. doi:10.​1128/​AEM.​02127-09 CrossRef
124.
Zurück zum Zitat Ahmed W, Wan C, Goonetilleke A, Gardner T (2010) Evaluating sewage-associated JCV and BKV polyomaviruses for sourcing human fecal pollution in a Coastal River in Southeast Queensland, Australia. J Environ Qual 39:1743. doi:10.2134/jeq2010.0062 CrossRef Ahmed W, Wan C, Goonetilleke A, Gardner T (2010) Evaluating sewage-associated JCV and BKV polyomaviruses for sourcing human fecal pollution in a Coastal River in Southeast Queensland, Australia. J Environ Qual 39:1743. doi:10.​2134/​jeq2010.​0062 CrossRef
125.
Zurück zum Zitat Fumian TM, Guimarães FR, Pereira Vaz BJ, da Silva MTT, Muylaert FF, Bofill-Mas S, Gironés R, Leite JPG, Miagostovich MP (2010) Molecular detection, quantification and characterization of human polyomavirus JC from waste water in Rio De Janeiro, Brazil. J Water Health 8:438–445. doi:10.2166/wh.2010.090 CrossRef Fumian TM, Guimarães FR, Pereira Vaz BJ, da Silva MTT, Muylaert FF, Bofill-Mas S, Gironés R, Leite JPG, Miagostovich MP (2010) Molecular detection, quantification and characterization of human polyomavirus JC from waste water in Rio De Janeiro, Brazil. J Water Health 8:438–445. doi:10.​2166/​wh.​2010.​090 CrossRef
126.
Zurück zum Zitat Hellein K, Battie C (2011) Culture-based indicators of fecal contamination and molecular microbial indicators rarely correlate with Campylobacter spp. in recreational waters. J Water Health 9:1–14. doi:10.2166/wh.2011.154 CrossRef Hellein K, Battie C (2011) Culture-based indicators of fecal contamination and molecular microbial indicators rarely correlate with Campylobacter spp. in recreational waters. J Water Health 9:1–14. doi:10.​2166/​wh.​2011.​154 CrossRef
127.
Zurück zum Zitat Chase E, Hunting J, Staley C, Harwood VJ (2012) Microbial source tracking to identify human and ruminant sources of faecal pollution in an ephemeral Florida river. J Appl Microbiol 113:1396–1406. doi:10.1111/jam.12007 CrossRef Chase E, Hunting J, Staley C, Harwood VJ (2012) Microbial source tracking to identify human and ruminant sources of faecal pollution in an ephemeral Florida river. J Appl Microbiol 113:1396–1406. doi:10.​1111/​jam.​12007 CrossRef
128.
Zurück zum Zitat Gordon KV, Mott J, Wang S, Brownell M, Lepo JE, Nathaniel R, Hellein KN, Harwood VJ, Kilgen M, Kennedy E (2012) Relationship of human-associated microbial source tracking markers with enterococci in Gulf of Mexico waters. Water Res 47:996–1004. doi:10.1016/j.watres.2012.10.032 CrossRef Gordon KV, Mott J, Wang S, Brownell M, Lepo JE, Nathaniel R, Hellein KN, Harwood VJ, Kilgen M, Kennedy E (2012) Relationship of human-associated microbial source tracking markers with enterococci in Gulf of Mexico waters. Water Res 47:996–1004. doi:10.​1016/​j.​watres.​2012.​10.​032 CrossRef
129.
Zurück zum Zitat McQuaig S, Griffith J, Harwood VJ (2012) Association of fecal indicator bacteria with human viruses and microbial source tracking markers at coastal beaches impacted by nonpoint source pollution. Appl Environ Microbiol 78:6423–6432. doi:10.1128/AEM.00024-12 CrossRef McQuaig S, Griffith J, Harwood VJ (2012) Association of fecal indicator bacteria with human viruses and microbial source tracking markers at coastal beaches impacted by nonpoint source pollution. Appl Environ Microbiol 78:6423–6432. doi:10.​1128/​AEM.​00024-12 CrossRef
130.
Zurück zum Zitat Staley C, Gordon KV, Schoen ME, Harwood VJ (2012) Methods for microbial source tracking of performance of two quantitative PCR methods for microbial source tracking of human sewage and implications for microbial risk assessment in recreational waters. Appl Environ Microbiol 78:7317–7326. doi:10.1128/AEM.01430-12 CrossRef Staley C, Gordon KV, Schoen ME, Harwood VJ (2012) Methods for microbial source tracking of performance of two quantitative PCR methods for microbial source tracking of human sewage and implications for microbial risk assessment in recreational waters. Appl Environ Microbiol 78:7317–7326. doi:10.​1128/​AEM.​01430-12 CrossRef
131.
Zurück zum Zitat Calgua B, Fumian T, Rusiñol M, Rodriguez-Manzano J, Mbayed V, Bofill-Mas S, Miagostovich M, Girones R (2013) Detection and quantification of classic and emerging viruses by skimmed-milk flocculation and PCR in river water from two geographical areas. Water Res 47:2797–2810. doi:10.1016/j.watres.2013.02.043 CrossRef Calgua B, Fumian T, Rusiñol M, Rodriguez-Manzano J, Mbayed V, Bofill-Mas S, Miagostovich M, Girones R (2013) Detection and quantification of classic and emerging viruses by skimmed-milk flocculation and PCR in river water from two geographical areas. Water Res 47:2797–2810. doi:10.​1016/​j.​watres.​2013.​02.​043 CrossRef
132.
Zurück zum Zitat Bofill-Mas S, Hundesa A, Calgua B, Rusiñol M, Maluquer de Motes C, Girones R (2011) Cost-effective method for microbial source tracking using specific human and animal viruses. J Vis Exp 5:5–9. doi:10.3791/2820 Bofill-Mas S, Hundesa A, Calgua B, Rusiñol M, Maluquer de Motes C, Girones R (2011) Cost-effective method for microbial source tracking using specific human and animal viruses. J Vis Exp 5:5–9. doi:10.​3791/​2820
133.
134.
Zurück zum Zitat Wong K, Xagoraraki I (2011) Evaluating the prevalence and genetic diversity of adenovirus and polyomavirus in bovine waste for microbial source tracking. Appl Microbiol Biotechnol 90:1521–1526. doi:10.1007/s00253-011-3156-z CrossRef Wong K, Xagoraraki I (2011) Evaluating the prevalence and genetic diversity of adenovirus and polyomavirus in bovine waste for microbial source tracking. Appl Microbiol Biotechnol 90:1521–1526. doi:10.​1007/​s00253-011-3156-z CrossRef
135.
Zurück zum Zitat Viancelli A, Kunz A, Steinmetz RLR, Kich JD, Souza CK, Canal CW, Coldebella A, Esteves PA, Barardi CRM (2013) Chemosphere performance of two swine manure treatment systems on chemical composition and on the reduction of pathogens. Chemosphere 90:1539–1544. doi:10.1016/j.chemosphere.2012.08.055 CrossRef Viancelli A, Kunz A, Steinmetz RLR, Kich JD, Souza CK, Canal CW, Coldebella A, Esteves PA, Barardi CRM (2013) Chemosphere performance of two swine manure treatment systems on chemical composition and on the reduction of pathogens. Chemosphere 90:1539–1544. doi:10.​1016/​j.​chemosphere.​2012.​08.​055 CrossRef
136.
Zurück zum Zitat Corsi SR, Borchardt MA, Spencer SK, Hughes PE, Baldwin AK (2014) Human and bovine viruses in the Milwaukee River watershed: hydrologically relevant representation and relations with environmental variables. Sci Total Environ 490:849–860. doi:10.1016/j.scitotenv.2014.05.072 CrossRef Corsi SR, Borchardt MA, Spencer SK, Hughes PE, Baldwin AK (2014) Human and bovine viruses in the Milwaukee River watershed: hydrologically relevant representation and relations with environmental variables. Sci Total Environ 490:849–860. doi:10.​1016/​j.​scitotenv.​2014.​05.​072 CrossRef
137.
Zurück zum Zitat Directive 2000/60/EC of the European Parliament and of the Council establishing a framework for the Community action in the field of water policy. EU Water Framework Directive Directive 2000/60/EC of the European Parliament and of the Council establishing a framework for the Community action in the field of water policy. EU Water Framework Directive
138.
Zurück zum Zitat European Commission DG XI (1997) The implementation of council directive 91/676/EEC concerning the protection of waters against pollution caused by nitrates from agricultural sources. Report COM (97)473 European Commission DG XI (1997) The implementation of council directive 91/676/EEC concerning the protection of waters against pollution caused by nitrates from agricultural sources. Report COM (97)473
139.
Zurück zum Zitat Skeffington R (2002) European nitrogen policies, nitrate in rivers and the use of the INCA model. Hydrol Earth Syst Sci 6:315–324CrossRef Skeffington R (2002) European nitrogen policies, nitrate in rivers and the use of the INCA model. Hydrol Earth Syst Sci 6:315–324CrossRef
140.
Zurück zum Zitat Pinheiro LB, Coleman VA, Hindson CM, Herrmann J, Hindson BJ, Bhat S, Emslie KR (2012) Evaluation of a droplet digital polymerase chain reaction format for DNA copy number quantification. Anal Chem 84:1003–1011 Pinheiro LB, Coleman VA, Hindson CM, Herrmann J, Hindson BJ, Bhat S, Emslie KR (2012) Evaluation of a droplet digital polymerase chain reaction format for DNA copy number quantification. Anal Chem 84:1003–1011
141.
Zurück zum Zitat Gilbride KA, Lee D-Y, Beaudette LA (2006) Molecular techniques in wastewater: understanding microbial communities, detecting pathogens, and real-time process control. J Microbiol Methods 66:1–20. doi:10.1016/j.mimet.2006.02.016 Gilbride KA, Lee D-Y, Beaudette LA (2006) Molecular techniques in wastewater: understanding microbial communities, detecting pathogens, and real-time process control. J Microbiol Methods 66:1–20. doi:10.1016/j.mimet.2006.02.016
142.
Zurück zum Zitat Ivnitski D, O’Neil DJ, Gattuso A, Schlicht R, Calidonna M, Fisher R (2003) Nucleic acid approaches for detection and identification of biological warfare and infectious disease agents. BioTechniques 35:862–869 Ivnitski D, O’Neil DJ, Gattuso A, Schlicht R, Calidonna M, Fisher R (2003) Nucleic acid approaches for detection and identification of biological warfare and infectious disease agents. BioTechniques 35:862–869
Metadaten
Titel
Specific Viruses Present in Polluted Groundwater Are Indicative of the Source of Nitrates and Faecal Contamination in Agricultural Areas
verfasst von
Sílvia Bofill-Mas
Marta Rusiñol
Josep Fraile
Teresa Garrido
Antoni Munné
Rosina Girones
Copyright-Jahr
2016
DOI
https://doi.org/10.1007/698_2015_426