Skip to main content

2015 | OriginalPaper | Buchkapitel

Statistical Modelling of Artificial Neural Network for Sorting Temporally Synchronous Spikes

verfasst von : Rakesh Veerabhadrappa, Asim Bhatti, Chee Peng Lim, Thanh Thi Nguyen, S. J. Tye, Paul Monaghan, Saeid Nahavandi

Erschienen in: Neural Information Processing

Verlag: Springer International Publishing

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

Artificial neural network (ANN) models are able to predict future events based on current data. The usefulness of an ANN lies in the capacity of the model to learn and adjust the weights following previous errors during training. In this study, we carefully analyse the existing methods in neuronal spike sorting algorithms. The current methods use clustering as a basis to establish the ground truths, which requires tedious procedures pertaining to feature selection and evaluation of the selected features. Even so, the accuracy of clusters is still questionable. Here, we develop an ANN model to specially address the present drawbacks and major challenges in neuronal spike sorting. New enhancements are introduced into the conventional backpropagation ANN for determining the network weights, input nodes, target node, and error calculation. Coiflet modelling of noise is employed to enhance the spike shape features and overshadow noise. The ANN is used in conjunction with a special spiking event detection technique to prioritize the targets. The proposed enhancements are able to bolster the training concept, and on the whole, contributing to sorting neuronal spikes with close approximations.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literatur
1.
Zurück zum Zitat Quiroga, R.Q.: Concept cells: the building blocks of declarative memory functions. Nature Rev. Neurosci. 13(8), 587–597 (2012) Quiroga, R.Q.: Concept cells: the building blocks of declarative memory functions. Nature Rev. Neurosci. 13(8), 587–597 (2012)
2.
Zurück zum Zitat Mussa-Ivaldi, F.A., Miller, L.E.: Brain machine interfaces: computational demands and clinical needs meet basic neuroscience. Trends Neurosci. 26(6), 329–334 (2003)CrossRef Mussa-Ivaldi, F.A., Miller, L.E.: Brain machine interfaces: computational demands and clinical needs meet basic neuroscience. Trends Neurosci. 26(6), 329–334 (2003)CrossRef
3.
Zurück zum Zitat Sahani, M., Pezaris, J.S., Andersen, R.A.: On the separation of signals from neighboring cells in tetrode recordings. In: Advances in Neural Information Processing Systems 10, pp. 222–228. MIT Press (1998) Sahani, M., Pezaris, J.S., Andersen, R.A.: On the separation of signals from neighboring cells in tetrode recordings. In: Advances in Neural Information Processing Systems 10, pp. 222–228. MIT Press (1998)
4.
Zurück zum Zitat Gothard, K.M., Skaggs, W.E., McNaughton, B.L.: Dynamics of mismatch correction in the hippocampal ensemble code for space: interaction between path integration and environmental cues. J. Neurosci. 16(24), 8027–8040 (1996) Gothard, K.M., Skaggs, W.E., McNaughton, B.L.: Dynamics of mismatch correction in the hippocampal ensemble code for space: interaction between path integration and environmental cues. J. Neurosci. 16(24), 8027–8040 (1996)
5.
Zurück zum Zitat Harris, K.D., Henze, D.A., Csicsvari, J., Hirase, H., Buzsáki, G.: Accuracy of tetrode spike separation as determined by simultaneous intracellular and extracellular measurements. J. Neurophysiol. 84(1), 401–414 (2000) Harris, K.D., Henze, D.A., Csicsvari, J., Hirase, H., Buzsáki, G.: Accuracy of tetrode spike separation as determined by simultaneous intracellular and extracellular measurements. J. Neurophysiol. 84(1), 401–414 (2000)
6.
Zurück zum Zitat Reinhard, K., Tikidji-Hamburyan, A., Seitter, H., Idrees, S., Mutter, M., Benkner, B., Munch, T.A.: Step-by-step instructions for retina recordings with perforated multi electrode arrays. PLoS ONE 9(8), e106148 (2014)CrossRef Reinhard, K., Tikidji-Hamburyan, A., Seitter, H., Idrees, S., Mutter, M., Benkner, B., Munch, T.A.: Step-by-step instructions for retina recordings with perforated multi electrode arrays. PLoS ONE 9(8), e106148 (2014)CrossRef
7.
Zurück zum Zitat Wang, Y., Yeung, C.-K., Ingebrandt, S., Offenhaeusser, A., Chan, M.: Multi-electrode arrays (meas) with guided network for cell-to-cell communication transduction. In: IEEE International Electron Devices Meeting, IEDM Technical Digest, p. 3, p. 484, December 2005 Wang, Y., Yeung, C.-K., Ingebrandt, S., Offenhaeusser, A., Chan, M.: Multi-electrode arrays (meas) with guided network for cell-to-cell communication transduction. In: IEEE International Electron Devices Meeting, IEDM Technical Digest, p. 3, p. 484, December 2005
8.
Zurück zum Zitat Pfeffer, L., Ide, D., Stewart, C., Plenz, D.:. A life support system for stimulation of and recording from rodent neuron networks grown on multi-electrode arrays. In: Proceedings of the 17th IEEE Symposium on Computer-Based Medical Systems, CBMS 2004, pp. 473–478, June 2004 Pfeffer, L., Ide, D., Stewart, C., Plenz, D.:. A life support system for stimulation of and recording from rodent neuron networks grown on multi-electrode arrays. In: Proceedings of the 17th IEEE Symposium on Computer-Based Medical Systems, CBMS 2004, pp. 473–478, June 2004
9.
Zurück zum Zitat Hottowy, P., Beggs, J.M., Chichilnisky, E.J., Dabrowski, W., Fiutowski, T., Gunning, D.E., Hobbs, J., Jepson, L., Kachiguine, S., Mathieson, K., et al.: 512-electrode mea system for spatio-temporal distributed stimulation and recording of neural activity. In: Stett, A. (ed.) Proceedings of the 7th International Meeting on Substrate-Integrated Microelectrode Arrays, Reutlingen, Germany, pp. 327–330, June 2010 Hottowy, P., Beggs, J.M., Chichilnisky, E.J., Dabrowski, W., Fiutowski, T., Gunning, D.E., Hobbs, J., Jepson, L., Kachiguine, S., Mathieson, K., et al.: 512-electrode mea system for spatio-temporal distributed stimulation and recording of neural activity. In: Stett, A. (ed.) Proceedings of the 7th International Meeting on Substrate-Integrated Microelectrode Arrays, Reutlingen, Germany, pp. 327–330, June 2010
10.
Zurück zum Zitat Gaburro, J., Duchemin, J.-B., Bhatti, A., Walker, P., Nahavandi, S.: Neurophysiology of insects using microelectrode arrays: current trends and future prospects. In: Loo, C.K., Yap, K.S., Wong, K.W., Beng Jin, A.T., Huang, K. (eds.) ICONIP 2014, Part III. LNCS, vol. 8836, pp. 493–500. Springer, Heidelberg (2014) Gaburro, J., Duchemin, J.-B., Bhatti, A., Walker, P., Nahavandi, S.: Neurophysiology of insects using microelectrode arrays: current trends and future prospects. In: Loo, C.K., Yap, K.S., Wong, K.W., Beng Jin, A.T., Huang, K. (eds.) ICONIP 2014, Part III. LNCS, vol. 8836, pp. 493–500. Springer, Heidelberg (2014)
11.
Zurück zum Zitat Henze, D.A., Harris, K.D., Borhegyi, Z., Csicsvari, J., Mamiya, A., Hirase, H., Sirota, A., Buzsáki, G.: Simultaneous intracellular and extracellular recordings from hippocampus region ca1 of anesthetized rats (2009) Henze, D.A., Harris, K.D., Borhegyi, Z., Csicsvari, J., Mamiya, A., Hirase, H., Sirota, A., Buzsáki, G.: Simultaneous intracellular and extracellular recordings from hippocampus region ca1 of anesthetized rats (2009)
12.
Zurück zum Zitat Henze, D.A., Borhegyi, Z., Csicsvari, J., Mamiya, A., Harris, K.D., Buzsáki, G.: Intracellular features predicted by extracellular recordings in the hippocampus in vivo. J. Neurophysiol. 84(1), 390–400 (2000) Henze, D.A., Borhegyi, Z., Csicsvari, J., Mamiya, A., Harris, K.D., Buzsáki, G.: Intracellular features predicted by extracellular recordings in the hippocampus in vivo. J. Neurophysiol. 84(1), 390–400 (2000)
13.
Zurück zum Zitat Prentice, J.S., Homann, J., Simmons, K.D., Tkacik, G., Balasubramanian, V., Nelson, P.C.: Fast, scalable, bayesian spike identification for multi-electrode arrays. PLoS ONE 6(7), e19884 (2011)CrossRef Prentice, J.S., Homann, J., Simmons, K.D., Tkacik, G., Balasubramanian, V., Nelson, P.C.: Fast, scalable, bayesian spike identification for multi-electrode arrays. PLoS ONE 6(7), e19884 (2011)CrossRef
14.
Zurück zum Zitat Hulata, E., Segev, R., Ben-Jacob, E.: A method for spike sorting and detection based on wavelet packets and shannon’s mutual information. J. Neurosci. 117, 1–12 (2002) Hulata, E., Segev, R., Ben-Jacob, E.: A method for spike sorting and detection based on wavelet packets and shannon’s mutual information. J. Neurosci. 117, 1–12 (2002)
15.
Zurück zum Zitat Platkiewicz, J., Brette, R.: A threshold equation for action potential initiation. PLoS Comput. Biol. 6(7), e1000850 (2010)MathSciNetCrossRef Platkiewicz, J., Brette, R.: A threshold equation for action potential initiation. PLoS Comput. Biol. 6(7), e1000850 (2010)MathSciNetCrossRef
16.
Zurück zum Zitat Marre, O., Amodei, D., Deshmukh, N., Sadeghi, K., Soo, F., Holy, T.E., Berry, M.J.: Mapping a complete neural population in the retina. J. Neurosci. 32(43), 14859–14873 (2012)CrossRef Marre, O., Amodei, D., Deshmukh, N., Sadeghi, K., Soo, F., Holy, T.E., Berry, M.J.: Mapping a complete neural population in the retina. J. Neurosci. 32(43), 14859–14873 (2012)CrossRef
17.
Zurück zum Zitat Ekanadham, C., Tranchina, D., Simoncelli, E.P.: A unified framework and method for automatic neural spike identification. J. Neurosci. Meth. 222, 47–55 (2014)CrossRef Ekanadham, C., Tranchina, D., Simoncelli, E.P.: A unified framework and method for automatic neural spike identification. J. Neurosci. Meth. 222, 47–55 (2014)CrossRef
18.
Zurück zum Zitat Pillow, J.W., Shlens, J., Chichilnisky, E.J., Simoncelli, E.P.: A model-based spike sorting algorithm for removing correlation artifacts in multi-neuron recordings. PLoS ONE 8(5), e62123 (2013)CrossRef Pillow, J.W., Shlens, J., Chichilnisky, E.J., Simoncelli, E.P.: A model-based spike sorting algorithm for removing correlation artifacts in multi-neuron recordings. PLoS ONE 8(5), e62123 (2013)CrossRef
19.
Zurück zum Zitat Shahid, S., Walker, J., Smith, L.S.: A new spike detection algorithm for extracellular neural recordings. IEEE Trans. Biomed. Eng. 57(4), 853–866 (2010)CrossRef Shahid, S., Walker, J., Smith, L.S.: A new spike detection algorithm for extracellular neural recordings. IEEE Trans. Biomed. Eng. 57(4), 853–866 (2010)CrossRef
21.
Zurück zum Zitat Pouzat, C., Mazor, O., Laurent, G.: Using noise signature to optimize spike-sorting and to assess neuronal classification quality. J. Neurosci. Meth. 122(1), 43–57 (2002)CrossRef Pouzat, C., Mazor, O., Laurent, G.: Using noise signature to optimize spike-sorting and to assess neuronal classification quality. J. Neurosci. Meth. 122(1), 43–57 (2002)CrossRef
22.
Zurück zum Zitat Smith, L.S., Mtetwa, N.: A tool for synthesizing spike trains with realistic interference. J. Neurosci. Meth. 159(1), 170–180 (2007)CrossRef Smith, L.S., Mtetwa, N.: A tool for synthesizing spike trains with realistic interference. J. Neurosci. Meth. 159(1), 170–180 (2007)CrossRef
25.
Zurück zum Zitat Feng, M., Kammeyer, K.-D.: Suppression of gaussian noise using cumulants: a quantitative analysis. In: 1997 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 1997, vol. 5, pp. 3813–3816, April 1997 Feng, M., Kammeyer, K.-D.: Suppression of gaussian noise using cumulants: a quantitative analysis. In: 1997 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 1997, vol. 5, pp. 3813–3816, April 1997
26.
Zurück zum Zitat Quiroga, R.Q., Nadasdy, Z., Ben-Shaul, Y.: Unsupervised spike detection and sorting with wavelets and superparamagnetic clustering. Neural Comput. 16(8), 1661–1687 (2004)CrossRefMATH Quiroga, R.Q., Nadasdy, Z., Ben-Shaul, Y.: Unsupervised spike detection and sorting with wavelets and superparamagnetic clustering. Neural Comput. 16(8), 1661–1687 (2004)CrossRefMATH
27.
Zurück zum Zitat Ma, Y., Li, J.: A novel method based on adaptive median filtering and wavelet transform in noise images. In: 2011 IEEE 3rd International Conference on Communication Software and Networks (ICCSN), pp. 626–629, May 2011 Ma, Y., Li, J.: A novel method based on adaptive median filtering and wavelet transform in noise images. In: 2011 IEEE 3rd International Conference on Communication Software and Networks (ICCSN), pp. 626–629, May 2011
28.
Zurück zum Zitat Yagle, A.E.: A fast algorithm for toeplitz-block-toeplitz linear systems. In: Proceedings of the 2001 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2001, vol. 3, pp. 1929–1932 (2001) Yagle, A.E.: A fast algorithm for toeplitz-block-toeplitz linear systems. In: Proceedings of the 2001 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2001, vol. 3, pp. 1929–1932 (2001)
Metadaten
Titel
Statistical Modelling of Artificial Neural Network for Sorting Temporally Synchronous Spikes
verfasst von
Rakesh Veerabhadrappa
Asim Bhatti
Chee Peng Lim
Thanh Thi Nguyen
S. J. Tye
Paul Monaghan
Saeid Nahavandi
Copyright-Jahr
2015
DOI
https://doi.org/10.1007/978-3-319-26555-1_30