Skip to main content
Erschienen in: Population Ecology 4/2018

22.08.2018 | Original article

Statistical test for detecting overdispersion in offspring number based on kinship information

verfasst von: Tetsuya Akita

Erschienen in: Population Ecology | Ausgabe 4/2018

Einloggen

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

In this paper, we develop a theory of a new statistic that tests overdispersion in offspring number on the basis of exactly known kinship relationships. The statistic utilizes the sample size and the number of kinship pairs found in a sample, specially the number of mother–offspring (MO) and maternal–half-sibling (MHS) pairs. Given a sufficiently large sample size, the statistic proposed in this paper approximately follows a standard-normal distribution under non-overdispersed conditions (Poisson’s variance). We found that (1) the value of the statistic (\(\ge 2\) or \(<2\)) reasonably indicates whether reproduction is overdispersed at the 5% significance level; (2) the power of the statistic is determined primarily by the balance between the degree of overdispersion and the sample size; (3) in many cases, if the number of kinship pairs can be approximated by a normal distribution, false-positive and false-negative situations can be avoided. The proposed method can detect moderate-weak levels of overdispersion that produce few MHS pairs in a sample because the effect of the population size (which determines the number of detected MHS pairs) is canceled by the detection of the number of MO pairs. Once the kinship determination procedure is established, this indirect measurement will be readily applicable to species even with weak overdispersion, expanding the available opportunities for understanding how overdispersion in offspring number affects ecological processes.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Literatur
Zurück zum Zitat Árnason E, Halldórsdóttir K (2015) Nucleotide variation and balancing selection at the Ckma gene in Atlantic cod: analysis with multiple merger coalescent models. PeerJ 3:e786CrossRef Árnason E, Halldórsdóttir K (2015) Nucleotide variation and balancing selection at the Ckma gene in Atlantic cod: analysis with multiple merger coalescent models. PeerJ 3:e786CrossRef
Zurück zum Zitat Birkner M, Blath J, Eldon B (2013) Statistical properties of the site-frequency spectrum associated with \(\Lambda\)-coalescents. Genetics 195:1037–1053CrossRef Birkner M, Blath J, Eldon B (2013) Statistical properties of the site-frequency spectrum associated with \(\Lambda\)-coalescents. Genetics 195:1037–1053CrossRef
Zurück zum Zitat Bravington MV, Grewe PM, Davies CR (2014) Fishery-independent estimate of spawning biomass of Southern Bluefin Tuna through identification of close-kin using genetic markers. FRDC Report 2007/034. CSIRO, Australia Bravington MV, Grewe PM, Davies CR (2014) Fishery-independent estimate of spawning biomass of Southern Bluefin Tuna through identification of close-kin using genetic markers. FRDC Report 2007/034. CSIRO, Australia
Zurück zum Zitat Bravington MV, Grewe PM, Davies CR (2016a) Absolute abundance of southern bluefin tuna estimated by close-kin mark-recapture. Nat Commun 7:13162CrossRef Bravington MV, Grewe PM, Davies CR (2016a) Absolute abundance of southern bluefin tuna estimated by close-kin mark-recapture. Nat Commun 7:13162CrossRef
Zurück zum Zitat Bravington MV, Skaug HJ, Anderson EC et al (2016b) Close-kin mark-recapture. Stat Sci 31:259–274CrossRef Bravington MV, Skaug HJ, Anderson EC et al (2016b) Close-kin mark-recapture. Stat Sci 31:259–274CrossRef
Zurück zum Zitat Clutton-Brock T (2007) Sexual selection in males and females. Science 318:1882–1885CrossRef Clutton-Brock T (2007) Sexual selection in males and females. Science 318:1882–1885CrossRef
Zurück zum Zitat Eldon B (2006) Coalescent processes when the distribution of offspring number among individuals is highly skewed. Genetics 172:2621–2633CrossRef Eldon B (2006) Coalescent processes when the distribution of offspring number among individuals is highly skewed. Genetics 172:2621–2633CrossRef
Zurück zum Zitat Eldon B, Birkner M, Blath J, Freund F (2015) Can the site-frequency spectrum distinguish exponential population growth from multiple-merger coalescents? Genetics 199:841–856CrossRef Eldon B, Birkner M, Blath J, Freund F (2015) Can the site-frequency spectrum distinguish exponential population growth from multiple-merger coalescents? Genetics 199:841–856CrossRef
Zurück zum Zitat Eldon B, Riquet F, Yearsley J, Jollivet D, Broquet T (2016) Current hypotheses to explain genetic chaos under the sea. Curr Zool 62:551–566CrossRef Eldon B, Riquet F, Yearsley J, Jollivet D, Broquet T (2016) Current hypotheses to explain genetic chaos under the sea. Curr Zool 62:551–566CrossRef
Zurück zum Zitat Feutry P, Berry O, Kyne PM, Pillans RD, Hillary RM, Grewe PM, Marthick JR, Johnson G, Gunasekera RM, Bax NJ, Bravington M (2016) Inferring contemporary and historical genetic connectivity from juveniles. Mol Ecol 26:444–456CrossRef Feutry P, Berry O, Kyne PM, Pillans RD, Hillary RM, Grewe PM, Marthick JR, Johnson G, Gunasekera RM, Bax NJ, Bravington M (2016) Inferring contemporary and historical genetic connectivity from juveniles. Mol Ecol 26:444–456CrossRef
Zurück zum Zitat Hedgecock D, Pudovkin AI (2011) Sweepstakes reproductive success in highly fecund marine fish and shellfish: a review and commentary. Bull Mar Sci 87:971–1002CrossRef Hedgecock D, Pudovkin AI (2011) Sweepstakes reproductive success in highly fecund marine fish and shellfish: a review and commentary. Bull Mar Sci 87:971–1002CrossRef
Zurück zum Zitat Luikart G, Ryman N, Tallmon DA, Schwartz MK, Allendorf FW (2010) Estimation of census and effective population sizes: the increasing usefulness of DNA-based approaches. Conserv Genet 11:355–373CrossRef Luikart G, Ryman N, Tallmon DA, Schwartz MK, Allendorf FW (2010) Estimation of census and effective population sizes: the increasing usefulness of DNA-based approaches. Conserv Genet 11:355–373CrossRef
Zurück zum Zitat Niwa HS, Nashida K, Yanagimoto T (2016) Reproductive skew in Japanese sardine inferred from DNA sequences. ICES J Mar Sci 73:2181–2189CrossRef Niwa HS, Nashida K, Yanagimoto T (2016) Reproductive skew in Japanese sardine inferred from DNA sequences. ICES J Mar Sci 73:2181–2189CrossRef
Zurück zum Zitat Queller DC, Goodnight KF (1989) Estimating relatedness using genetic markers. Evolution 43:258–275CrossRef Queller DC, Goodnight KF (1989) Estimating relatedness using genetic markers. Evolution 43:258–275CrossRef
Zurück zum Zitat Schader M, Schmid F (1989) Two rules of thumb for the approximation of the binomial distribution by the normal distribution. Am Stat 43:23–24 Schader M, Schmid F (1989) Two rules of thumb for the approximation of the binomial distribution by the normal distribution. Am Stat 43:23–24
Zurück zum Zitat Starrfelt J, Kokko H (2012) Bet-hedging-a triple trade-off between means, variances and correlations. Biol Rev 87:742–755CrossRef Starrfelt J, Kokko H (2012) Bet-hedging-a triple trade-off between means, variances and correlations. Biol Rev 87:742–755CrossRef
Zurück zum Zitat Tellier A, Lemaire C (2014) Coalescence 2.0: a multiple branching of recent theoretical developments and their applications. Mol Ecol 23:2637–2652CrossRef Tellier A, Lemaire C (2014) Coalescence 2.0: a multiple branching of recent theoretical developments and their applications. Mol Ecol 23:2637–2652CrossRef
Zurück zum Zitat Waples RS (2016) Tiny estimates of the \(N_{\rm e}/N\) ratio in marine fishes: are they real? J Fish Biol 89:2479–2504CrossRef Waples RS (2016) Tiny estimates of the \(N_{\rm e}/N\) ratio in marine fishes: are they real? J Fish Biol 89:2479–2504CrossRef
Metadaten
Titel
Statistical test for detecting overdispersion in offspring number based on kinship information
verfasst von
Tetsuya Akita
Publikationsdatum
22.08.2018
Verlag
Springer Japan
Erschienen in
Population Ecology / Ausgabe 4/2018
Print ISSN: 1438-3896
Elektronische ISSN: 1438-390X
DOI
https://doi.org/10.1007/s10144-018-0629-2

Weitere Artikel der Ausgabe 4/2018

Population Ecology 4/2018 Zur Ausgabe

RESPONSIBLE EDITORS, HANDLING EDITORS AND REVIEWERS

Acknowledgements to Reviewers and Editors