2013 | OriginalPaper | Buchkapitel
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Fluorescence in Bio-inspired Nanotechnology
This chapter covers the papers which make up the foundation of this thesis. The papers can be found through the references on page III. Many of the themes have already been discussed in the previous chapters and I will refer back to these discussions and also try to bring in some new aspects. I have decided to divide the chapter into three parts covering three different themes.
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1.
Heilemann M, Kasper R, Tinnefeld P, Sauer M (2006) Dissecting and reducing the heterogeneity of excited-state energy transport in DNA-based photonic wires. J Am Chem Soc 128:16864–16875
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2.
Hannestad JK, Sandin P, Albinsson B (2008) Self-assembled DNA photonic wire for long-range energy transfer. J Am Chem Soc 130:15889–15895
3.
Carlsson CLA, Björkman M, Jonsson M, Albinsson B (1997) Experimental and simulated fluorescence depolarization due to energy transfer as tools to study DNA-dye interactions. Biopolymers 41:481–494
CrossRef
4.
Vyawahare S, Eyal S, Mathews KD, Quake SR (2004) Nanometer-scale fluorescence resonance optical waveguides. Nano Lett 4:1035–1039
CrossRef
5.
Su W, Schuster M, Bagshaw CR, Rant U, Burley GA (2011) Site-specific assembly of DNA-based photonic wires by using programmable polyamides. Angew Chem Int Ed 50:2712–2715
CrossRef
6.
Cohen JD, Sadowski JP, Dervan PB (2007) Addressing single molecules on DNA nanostructures. Angew Chem Int Ed 46:7956–7959
CrossRef
7.
Cohen JD, Sadowski JP, Dervan PB (2008) Programming multiple protein patterns on a single DNA nanostructure. J Am Chem Soc 130:402
8.
Börjesson K, Preus S, El-Sagheer AH, Brown T, Albinsson B, Wilhelmsson LM (2009) Nucleic acid base analog fret-pair facilitating detailed structural measurements in nucleic acid containing systems. J Am Chem Soc 131:4288–4293
CrossRef
9.
Iqbal A, Arslan S, Okumus B, Wilson TJ, Giraud G, Norman DG, Ha T, Lilley DMJ (2008) Orientation Dependence in Fluorescent Energy Transfer between Cy3 and Cy5 Terminally Attached to Double-Stranded Nuclelic Acids. Proc Natl Acad Sci USA 105:11176–11181
CrossRef
10.
Stein IH, Schüller V, Böhm P, Tinnefeld P, Liedl T (2011) Single-molecule fret ruler based on rigid DNA origami blocks. Chem Phys Chem 12:689–695
CrossRef
11.
Hannestad JK, Gerrard SR, Brown T, Albinsson B (2011) Self-assembled DNA-based fluorescence waveguide with selectable output. Small 7:3178–3185
CrossRef
12.
Tumpane J, Sandin P, Kumar R, Powers VEC, Lundberg EP, Gale N, Baglioni P, Lehn JM, Albinsson B, Lincoln P, Wilhelmsson LM, Brown T, Nordén B (2007) Addressable high-information-density DNA nanostructures. Chem Phys Lett 440:125–129
CrossRef
13.
Stein IH, Steinhauer C, Tinnefeld P (2011) Single-molecule four-color fret visualizes energy-transfer paths on DNA origami. J Am Chem Soc 133:4193–4195
CrossRef
14.
Dutta PK, Varghese R, Nangreave J, Lin S, Yan H, Liu Y (2011) DNA-directed artificial light-harvesting antenna. J Am Chem Soc 133:11985–11993
CrossRef
15.
Börjesson K, Tumpane J, Ljungdahl T, Wilhelmsson LM, Nordén B, Brown T, Mårtensson J, Albinsson B (2009) Membrane-anchored DNA assembly for energy and electron transfer. J Am Chem Soc 131:2831–2839
CrossRef
16.
Benvin AL, Creeger Y, Fisher GW, Ballou B, Waggoner AS, Armitage BA (2007) Fluorescent DNA nanotags: supramolecular fluorescent labels based on intercalating dye arrays assembled on nanostructured DNA templates. J Am Chem Soc 129:2025–2034
CrossRef
17.
Özhalıcı-Ünal H, Armitage BA (2009) Fluorescent DNA nanotags based on a self-assembled DNA tetrahedron. ACS Nano 3:425–433
CrossRef
18.
Börjesson K, Wiberg J, El-Sagheer AH, Ljungdahl T, Mårtensson J, Brown T, Nordén B, Albinsson B (2010) Functionalized nanostructures: redox-active porphyrin anchors for supramolecular DNA assemblies. ACS Nano 4:5037–5046
CrossRef
19.
Woller JG, Börjesson K, Svedhem S, Albinsson B (2012) Reversible hybridization of DNA anchored to a lipid membrane via porphyrin. Langmuir 28:1944–1953
CrossRef
20.
Börjesson K, Lundberg EP, Woller JG, Nordén B, Albinsson B (2011) Soft-surface DNA nanotechnology: DNA constructs anchored and aligned to lipid membrane. Angew Chem Int Ed 50:8312–8315
CrossRef
21.
Börjesson K, Woller JG, Parsa E, Mårtensson J, Albinsson B (2012) A bioinspired self assembled dimeric porphyrin pocket that binds electron accepting ligands. Chem Commun 48:1793–1795
CrossRef
22.
Martinez AW, Phillips ST, Whitesides GM (2008) Three-dimensional microfluidic devices fabricated in layered paper and tape. Proc Nat Acad Sci USA 105:19606–19611
CrossRef
23.
Chen D, Du WB, Liu Y, Liu WS, Kuznetsov A, Mendez FE, Philipson LH, Ismagilov RF (2008) The chemistrode: a droplet-based microfluidic device for stimulation and recording with high temporal, spatial, and chemical resolution. Proc Nat Acad Sci USA 105:16843–16848
CrossRef
24.
Edgar JS, Milne G, Zhao Y, Pabbati CP, Lim DSW, Chiu DT (2009) Compartmentalization of chemically separated components into droplets. Angew Chem Int Ed 48:2719–2722
CrossRef
25.
Jeffries GDM, Kuo JS, Chiu DT (2007) Dynamic modulation of chemical concentration in an aqueous droplet. Angew Chem Int Ed 46:1326–1328
CrossRef
26.
Sott K, Lobovkina T, Lizana L, Tokarz M, Bauer B, Konkoli Z, Orwar O (2006) Controlling enzymatic reactions by geometry in a biomimetic nanoscale network. Nano Lett 6:209–214
CrossRef
27.
Bolinger PY, Stamou D, Vogel H (2008) An integrated self-assembled nanofluidic system for controlled biological chemistries. Angew Chem Int Ed 47:5544–5549
CrossRef
28.
Czolkos I, Erkan Y, Dommersnes P, Jesorka A, Orwar O (2007) Controlled formation and mixing of two-dimensional fluids. Nano Lett 7:1980–1984
CrossRef
29.
Erkan Y, Halma K, Czolkos I, Jesorka A, Dommersnes P, Kumar R, Brown T, Orwar O (2008) Controlled release of chol-teg-DNA from nano- and micropatterned su-8 surfaces by a spreading lipid film. Nano Lett 8:227–231
30.
Nagle JF, Tristram-Nagle S (2000) Structure of lipid bilayers. Biochim Biophys Acta 1469:159–195
CrossRef
31.
Czolkos I, Guan J, Orwar O, Jesorka A (2011) Flow control of thermotropic lipid monolayers. Soft Matter 7:6926–6933
CrossRef
32.
Czolkos I, Hannestad JK, Jesorka A, Kumar R, Brown T, Albinsson B, Orwar O (2009) Platform for controlled supramolecular nanoassembly. Nano Lett 9:2482–2486
CrossRef
33.
Czolkos I, Hakonen B, Orwar O, Jesorka A (2012) High-resolution micropatterned teflon af substrates for biocompatible nanofluidic devices. Langmuir 28:3200–3205
CrossRef
34.
Chan YHM, Lenz P, Boxer SG (2007) Kinetics of DNA-mediated docking reactions between vesicles tethered to supported lipid bilayers. Proc Natl Acad Sci USA 104:18913–18918
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35.
Monti S, Cacelli I, Ferretti A, Prampolini G, Barone V (2010) Simulating DNA hybridization on an amine-functionalized silicon substrate. J Phys Chem B 114:8341–8349
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- Titel
- Summary of Publications
- DOI
- https://doi.org/10.1007/978-3-319-01068-7_8
- Autor:
-
Jonas Hannestad
- Verlag
- Springer International Publishing
- Sequenznummer
- 8
- Kapitelnummer
- Chapter 8