Ausgabe 7/2019
Special Section on Parallel Computing in Bioinformatics (pp. 3369-3521)
Inhalt (25 Artikel)
Parallel computing in bioinformatics: a view from high-performance, heterogeneous, and cloud computing
Miguel A. Vega-Rodríguez, Sergio Santander-Jiménez
Exploiting OpenMP and OpenACC to accelerate a geometric approach to molecular docking in heterogeneous HPC nodes
Emanuele Vitali, Davide Gadioli, Gianluca Palermo, Andrea Beccari, Carlo Cavazzoni, Cristina Silvano
Time-energy analysis of multilevel parallelism in heterogeneous clusters: the case of EEG classification in BCI tasks
Juan José Escobar, Julio Ortega, Antonio F. Díaz, Jesús González, Miguel Damas
Hybrid parallel multimethod hyperheuristic for mixed-integer dynamic optimization problems in computational systems biology
Patricia González, Pablo Argüeso-Alejandro, David R. Penas, Xoan C. Pardo, Julio Saez-Rodriguez, Julio R. Banga, Ramón Doallo
Optimized cloud-based scheduling for protein secondary structure analysis
Marco Ferretti, Luigi Santangelo, Mirto Musci
Correction to: Optimized cloud-based scheduling for protein secondary structure analysis
Marco Ferretti, Luigi Santangelo, Mirto Musci
Efficient shadow detection by using PSO segmentation and region-based boundary detection technique
D. Usha Nandini, Ezil Sam Leni
A lightweight trust management algorithm based on subjective logic for interconnected cloud computing environments
Heba Kurdi, Auhood Alfaries, Abeer Al-Anazi, Sara Alkharji, Maimona Addegaither, Lina Altoaimy, Syed Hassan Ahmed
Dynamic and comprehensive trust model for IoT and its integration into RPL
Seyyed Yasser Hashemi, Fereidoon Shams Aliee
SmartData 4.0: a formal description framework for big data
Morteza Sargolzaei Javan, Mohammad Kazem Akbari
The divide-and-swap cube: a new hypercube variant with small network cost
Jong-Seok Kim, Donghyun Kim, Ke Qiu, Hyeong-Ok Lee
Toward a transparent and efficient GPU cloudification architecture
Juan Gutiérrez-Aguado, Jose M. Claver, Raúl Peña-Ortiz
Multi-level clustering protocol for load-balanced and scalable clustering in large-scale wireless sensor networks
Harmanpreet Singh, Damanpreet Singh
MOPT: list-based heuristic for scheduling workflows in cloud environment
Samia Ijaz, Ehsan Ullah Munir
An online context-aware mechanism for computation offloading in ubiquitous and mobile cloud environments
Alireza Salehan, Hossein Deldari, Saeid Abrishami
NoT: a high-level no-threading parallel programming method for heterogeneous systems
Shusen Wu, Xiaoshe Dong, Xingjun Zhang, Zhengdong Zhu
Smart elastic scheduling algorithm for virtual machine migration in cloud computing
Heba Nashaat, Nesma Ashry, Rawya Rizk
An OpenCL library for parallel random number generators
Tadej Ciglarič, Rok Češnovar, Erik Štrumbelj
CRFF.GP: cloud runtime formulation framework based on genetic programming
Shokooh Kamalinasab, Faramarz Safi-Esfahani, Majid Shahbazi
Memory latency optimizations for the elementary functions on the Sunway architecture
Bei Zhou, Yongzhong Huang, Jinchen Xu, Shaozhong Guo, Hongyuan Qi
Sleepy-LRU: extending the lifetime of non-volatile caches by reducing activity of age bits
Seyedeh Golsana Ghaemi, Iman Ahmadpour, Mehdi Ardebili, Hamed Farbeh