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The Journal of Supercomputing

Ausgabe 7/2019

Special Section on Parallel Computing in Bioinformatics (pp. 3369-3521)

Inhalt (25 Artikel)

Exploiting OpenMP and OpenACC to accelerate a geometric approach to molecular docking in heterogeneous HPC nodes

Emanuele Vitali, Davide Gadioli, Gianluca Palermo, Andrea Beccari, Carlo Cavazzoni, Cristina Silvano

Time-energy analysis of multilevel parallelism in heterogeneous clusters: the case of EEG classification in BCI tasks

Juan José Escobar, Julio Ortega, Antonio F. Díaz, Jesús González, Miguel Damas

Hybrid parallel multimethod hyperheuristic for mixed-integer dynamic optimization problems in computational systems biology

Patricia González, Pablo Argüeso-Alejandro, David R. Penas, Xoan C. Pardo, Julio Saez-Rodriguez, Julio R. Banga, Ramón Doallo

Correction

Correction to: Optimized cloud-based scheduling for protein secondary structure analysis

Marco Ferretti, Luigi Santangelo, Mirto Musci

A lightweight trust management algorithm based on subjective logic for interconnected cloud computing environments

Heba Kurdi, Auhood Alfaries, Abeer Al-Anazi, Sara Alkharji, Maimona Addegaither, Lina Altoaimy, Syed Hassan Ahmed

SmartData 4.0: a formal description framework for big data

Morteza Sargolzaei Javan, Mohammad Kazem Akbari

The divide-and-swap cube: a new hypercube variant with small network cost

Jong-Seok Kim, Donghyun Kim, Ke Qiu, Hyeong-Ok Lee

Toward a transparent and efficient GPU cloudification architecture

Juan Gutiérrez-Aguado, Jose M. Claver, Raúl Peña-Ortiz

A low-latency computing framework for time-evolving graphs

Shuo Ji, Yinliang Zhao, Xiaomei Zhao

NoT: a high-level no-threading parallel programming method for heterogeneous systems

Shusen Wu, Xiaoshe Dong, Xingjun Zhang, Zhengdong Zhu

An OpenCL library for parallel random number generators

Tadej Ciglarič, Rok Češnovar, Erik Štrumbelj

CRFF.GP: cloud runtime formulation framework based on genetic programming

Shokooh Kamalinasab, Faramarz Safi-Esfahani, Majid Shahbazi

Memory latency optimizations for the elementary functions on the Sunway architecture

Bei Zhou, Yongzhong Huang, Jinchen Xu, Shaozhong Guo, Hongyuan Qi

Sleepy-LRU: extending the lifetime of non-volatile caches by reducing activity of age bits

Seyedeh Golsana Ghaemi, Iman Ahmadpour, Mehdi Ardebili, Hamed Farbeh