Skip to main content

2016 | OriginalPaper | Buchkapitel

White Matter Fiber-Bundle Analysis Using Non-negative Tensor Factorization

verfasst von : Claudio Stamile, François Cotton, Frederik Maes, Dominique Sappey-Marinier, Sabine Van Huffel

Erschienen in: Image Analysis and Recognition

Verlag: Springer International Publishing

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

With the development of advanced image acquisition and processing techniques providing better biomarkers for the characterization of brain diseases, the automatic analysis of biomedical imaging constitutes a critical point. In particular, analysis of complex data structure is a challenge for better understanding complex brain pathologies like multiple sclerosis (MS).
In this work, we describe a new fully automated method based on non-negative tensor factorization (NTF) to analyze white matter (WM) fiber-bundles. This method allows to extract, from a WM fiber-bundle, the set of fibers affected by the pathology, discriminating fibers affected by the pathological from the healthy fibers.
Our method was validated on simulated data and also applied on real MS patients. Results show the high precision level of our method to extract fibers affected by the pathological process.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literatur
1.
Zurück zum Zitat Arthur, D., Vassilvitskii, S.: k-means++: The advantages of careful seeding. In: Proceedings of the Eighteenth Annual ACM-SIAM Symposium on Discrete Algorithms, pp. 1027–1035 (2007) Arthur, D., Vassilvitskii, S.: k-means++: The advantages of careful seeding. In: Proceedings of the Eighteenth Annual ACM-SIAM Symposium on Discrete Algorithms, pp. 1027–1035 (2007)
2.
Zurück zum Zitat Cichocki, A., Zdunek, R., Phan, A.H., Amari, S.I.: Nonnegative Matrix and Tensor Factorizations: Applications to Exploratory Multi-way Data Analysis and Blind Source Separation. Wiley, Chichester (2009)CrossRef Cichocki, A., Zdunek, R., Phan, A.H., Amari, S.I.: Nonnegative Matrix and Tensor Factorizations: Applications to Exploratory Multi-way Data Analysis and Blind Source Separation. Wiley, Chichester (2009)CrossRef
3.
Zurück zum Zitat Colby, J.B., Soderberg, L., Lebel, C., Dinov, I.D., Thompson, P.M., Sowell, E.R.: Along-tract statistics allow for enhanced tractography analysis. Neuroimage 59(4), 3227–3242 (2012)CrossRef Colby, J.B., Soderberg, L., Lebel, C., Dinov, I.D., Thompson, P.M., Sowell, E.R.: Along-tract statistics allow for enhanced tractography analysis. Neuroimage 59(4), 3227–3242 (2012)CrossRef
4.
Zurück zum Zitat Halandur Nagaraja, B., Sima, D., Sauwen, N., Himmelreich, U., De Lathauwer, L., Van Huffel, S.: Tensor based tumor tissue type differentiation using magnetic resonance spectroscopic imaging. In: Annual International Conference of the IEEE, EMBC, pp. 7003–7006 (2015) Halandur Nagaraja, B., Sima, D., Sauwen, N., Himmelreich, U., De Lathauwer, L., Van Huffel, S.: Tensor based tumor tissue type differentiation using magnetic resonance spectroscopic imaging. In: Annual International Conference of the IEEE, EMBC, pp. 7003–7006 (2015)
5.
Zurück zum Zitat Hua, K., Zhang, J., Wakana, S., Jiang, H., Li, X., Reich, D.S., Calabresi, P.A., Pekar, J.J., van Zijl, P.C.M., Mori, S.: Tract probability maps in stereotaxic spaces: analyses of white matter anatomy and tract-specific quantification. Neuroimage 39(1), 336–347 (2008)CrossRef Hua, K., Zhang, J., Wakana, S., Jiang, H., Li, X., Reich, D.S., Calabresi, P.A., Pekar, J.J., van Zijl, P.C.M., Mori, S.: Tract probability maps in stereotaxic spaces: analyses of white matter anatomy and tract-specific quantification. Neuroimage 39(1), 336–347 (2008)CrossRef
6.
Zurück zum Zitat MacQueen, J.: Some methods for classification and analysis of multivariate observations. In: Proceedings of the Fifth Berkeley Symposium on Mathematical Statistics and Probability, vol. 1, pp. 281–297 (1967) MacQueen, J.: Some methods for classification and analysis of multivariate observations. In: Proceedings of the Fifth Berkeley Symposium on Mathematical Statistics and Probability, vol. 1, pp. 281–297 (1967)
7.
Zurück zum Zitat Mårtensson, J., Nilsson, M., Ståhlberg, F., Sundgren, P.C., Nilsson, C., van Westen, D., Larsson, E.-M., Lätt, J.: Spatial analysis of diffusion tensor tractography statistics along the inferior fronto-occipital fasciculus with application in progressive supranuclear palsy. MAGMA 26(6), 527–537 (2013)CrossRef Mårtensson, J., Nilsson, M., Ståhlberg, F., Sundgren, P.C., Nilsson, C., van Westen, D., Larsson, E.-M., Lätt, J.: Spatial analysis of diffusion tensor tractography statistics along the inferior fronto-occipital fasciculus with application in progressive supranuclear palsy. MAGMA 26(6), 527–537 (2013)CrossRef
8.
Zurück zum Zitat Sorber, L., Van Barel, M., De Lathauwer, L.: Tensorlab v2.0, January 2014 Sorber, L., Van Barel, M., De Lathauwer, L.: Tensorlab v2.0, January 2014
9.
Zurück zum Zitat Sorber, L., Van Barel, M., De Lathauwer, L.: Structured data fusion. Sel. Top. Sig. Process. 9(4), 586–600 (2015)CrossRef Sorber, L., Van Barel, M., De Lathauwer, L.: Structured data fusion. Sel. Top. Sig. Process. 9(4), 586–600 (2015)CrossRef
10.
Zurück zum Zitat Stamile, C., Kocevar, G., Cotton, F., Durand-Dubief, F., Hannoun, S., Frindel, C., Rousseau, D., Sappey-Marinier, D.: Detection of longitudinal dti changes in multiple sclerosis patients based on sensitive WM fiber modeling. In: ISMRM, May-June 2015, Toronto, Canada (2015) Stamile, C., Kocevar, G., Cotton, F., Durand-Dubief, F., Hannoun, S., Frindel, C., Rousseau, D., Sappey-Marinier, D.: Detection of longitudinal dti changes in multiple sclerosis patients based on sensitive WM fiber modeling. In: ISMRM, May-June 2015, Toronto, Canada (2015)
11.
Zurück zum Zitat Stamile, C., Kocevar, G., Cotton, F., Durand-Dubief, F., Hannoun, S., Frindel, C., Rousseau, D., Sappey-Marinier, D.: A longitudinal model for variations detection in white matter fiber-bundles. In: IWSSIP, pp. 57–60 (2015) Stamile, C., Kocevar, G., Cotton, F., Durand-Dubief, F., Hannoun, S., Frindel, C., Rousseau, D., Sappey-Marinier, D.: A longitudinal model for variations detection in white matter fiber-bundles. In: IWSSIP, pp. 57–60 (2015)
12.
Zurück zum Zitat Tournier, J.D., Calamante, F., Connelly, A.: MRtrix: diffusion tractography in crossing fiber regions. Int. J. Imaging Syst. Technol. 22, 53–66 (2012)CrossRef Tournier, J.D., Calamante, F., Connelly, A.: MRtrix: diffusion tractography in crossing fiber regions. Int. J. Imaging Syst. Technol. 22, 53–66 (2012)CrossRef
13.
Zurück zum Zitat Varentsova, A., Zhang, S., Arfanakis, K.: Development of a high angular resolution diffusion imaging human brain template. Neuroimage 91, 177–186 (2014)CrossRef Varentsova, A., Zhang, S., Arfanakis, K.: Development of a high angular resolution diffusion imaging human brain template. Neuroimage 91, 177–186 (2014)CrossRef
14.
Zurück zum Zitat Yeatman, J.D., Dougherty, R.F., Myall, N.J., Wandell, B.A., Feldman, H.M.: Tract profiles of white matter properties: automating fiber-tract quantification. PLoS One 7(11), e49790 (2012)CrossRef Yeatman, J.D., Dougherty, R.F., Myall, N.J., Wandell, B.A., Feldman, H.M.: Tract profiles of white matter properties: automating fiber-tract quantification. PLoS One 7(11), e49790 (2012)CrossRef
15.
Zurück zum Zitat Zhang, H., Yushkevich, P.A., Alexander, D.C., Gee, J.C.: Deformable registration of diffusion tensor MR images with explicit orientation optimization. Med. Image Anal. 10(5), 764–785 (2006)CrossRef Zhang, H., Yushkevich, P.A., Alexander, D.C., Gee, J.C.: Deformable registration of diffusion tensor MR images with explicit orientation optimization. Med. Image Anal. 10(5), 764–785 (2006)CrossRef
16.
Zurück zum Zitat Zink, R., Hunyadi, B., Van Huffel, S., De Vos, M.: Tensor-based classification of auditory mobile BCI without subject-specific calibration phase. J. Neural Eng. 13(2), 026005 (2016)CrossRef Zink, R., Hunyadi, B., Van Huffel, S., De Vos, M.: Tensor-based classification of auditory mobile BCI without subject-specific calibration phase. J. Neural Eng. 13(2), 026005 (2016)CrossRef
Metadaten
Titel
White Matter Fiber-Bundle Analysis Using Non-negative Tensor Factorization
verfasst von
Claudio Stamile
François Cotton
Frederik Maes
Dominique Sappey-Marinier
Sabine Van Huffel
Copyright-Jahr
2016
DOI
https://doi.org/10.1007/978-3-319-41501-7_73