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2016 | OriginalPaper | Buchkapitel

Functional Microbial Composition

verfasst von : Haihan Zhang

Erschienen in: Water Pollution and Water Quality Control of Selected Chinese Reservoir Basins

Verlag: Springer International Publishing

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Abstract

Reservoir water qualities are regulated by sediment/water microbial functional communities harbored in the drinking water reservoir ecosystem. However, little is known about reservoir sediment-/water-associated bacterial, fungal, archaeal, sulfate reducing bacterial, and actinomycetes populations. In this chapter, we used nested polymerase chain reaction (PCR) denaturing gradient gel electrophoresis (DGGE), substrate utilization profiling (named BIOLOG), quantitative PCR, clone sequencing, and high-throughout pyrosequencing methods to describe the microbial functional composition in drinking water reservoir ecosystems. Based on these backgrounds, there are five parts in this chapter, as follows: (1) Microbial metabolic activity in the sediments of drinking water reservoirs; (2) Bacterial composition in drinking water reservoir sediments; (3) Fungal composition in drinking water reservoir sediments; (4) Archaeal composition in drinking water reservoir sediments; (5) Carbon utilization patterns of reservoir water bacterial communities. The results from this chapter will undoubtedly broaden our understanding of reservoir functional microbial species harbored in these freshwater environmental conditions. The specific microbial species might be used for reservoir water bioremediation engineering processes.

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Vorheriges Kapitel Water Quality Improvement by Water-Lifting Aerators

Nächstes Kapitel Screening and Cultivation of Oligotrophic Aerobic Denitrifying Bacteria

Huang TL, Chai BB, Qiu ES, Zhou WH (2010) Microbial effects on phosphorus release from sediments on the multi-phase interface of water-sediment-biofacies. J Basic Sci Eng 18:61–70

Kohling T, Lara-Martín P, González-Mazo E, Amils R, Sanz JL (2011) Microbial community composition of anoxic marine sediments in the Bay of Cádiz (Spain). Int Microbiol 14:143–154

Jiang H, Dong H, Yu B, Liu X, Li Y, Ji S, Zhang CL (2007) Microbial response to salinity change in Lake Chaka, a hypersaline lake on Tibetan plateau. Environ Microbiol 10:2603–2621CrossRef

Jiang H, Dong H, Zhang GX, Yu BS, Chapman LR, Fields MW (2006) Microbial diversity in water and sediment of Lake Chaka, an athalassohaline lake in northwestern China. Appl Environ Microbiol 72:3832–3845CrossRef

Mesbah NM, Abou-El-Ela SH, Wiegel J (2007) Novel and unexpected prokaryotic diversity in water and sediments of the alkaline, hypersaline lakes of the Wadi An Natrun, Egypt. Microb Ecol 54:598–617CrossRef

Swan BK, Ehrhardt CJ, Reifel KM, Moreno LI, Valentine DL (2010) Archaeal and bacterial communities respond differently to environmental gradients in anoxic sediments of a California hypersaline lake, the Salton Sea. Appl Environ Microbiol 76:757–768CrossRef

Tamaki H, Sekiguchi YJ, Hanada S, Nakamura K, Nomura N, Matsumura M, Kamagata Y (2005) Comparative analysis of bacterial diversity in freshwater sediment of a shallow eutrophic lake by molecular and improved cultivation-based techniques. Appl Environ Microbiol 71:2162–2169CrossRef

Droppo IG, Krishnappan BG, Liss SN, Marvin C, Biberhofer J (2011) Modelling sediment-microbial dynamics in the South Nation River, Ontario, Canada: towards the prediction of aquatic and human health risk. Water Res 45:3797–3809CrossRef

Zhang Y, Wu E, Li CX, Yang SW, Jin XC, Liao JY, Wang SR (2011) Enzyme activity in sediments and its relation with eutrophication in the lakes along the Yangtze River. Chin J Appl Environ Biol 17:196–201 (in Chinese)CrossRef

10.

Zhang Y, Jiao NZ, Sun ZY, Hu AY, Zheng Q (2011) Phylogenetic diversity of bacterial communities in South China Sea mesoscale cyclonic eddy perturbations. Res Microbiol 162:320–329CrossRef

11.

Bossio DA, Fleck JA, Scow KM, Fujii R (2006) Alteration of soil microbial communities and water quality in restored wetlands. Soil Biol Biochem 38:1223–1233CrossRef

12.

Briée C, Moreira D, López-García P (2007) Archaeal and bacterial community composition of sediment and plankton from a suboxic freshwater pond. Res Microbiol 158:213–227CrossRef

13.

Chaerun S, Pangesti NPD, Jumiarni D (2010) Biogeochemical characterization of sediments from three largest dam reservoirs (Saguling, Cirata, Jatiluhur) in West Java Province, Indonesia. Proceedings of the 8th international symposium on southeast Asian water environment, pp 169–182

14.

Mhamdi BA, Azzouzi A, Khattabi H, Mhamdi MA, Aleya L (2006) The bacteria in the sediment of the Sahela reservoir (Morocco): potential impacts on phosphorus budget. Environ Technol 27:1249–1256CrossRef

15.

Qu JH, Yuan HL, Wang ET, Li C, Huang HZ (2008) Bacterial diversity in sediments of the eutrophic Guanting reservoir, China, estimated by analyses of 16S rDNA sequence. Biodivers Conserv 17:1667–1683CrossRef

16.

Wobus A, Bleul C, Maassen S, Scheerer C, Schuppler M, Jacobs E (2003) Microbial diversity and functional characterization of sediments from reservoirs of different trophic state. FEMS Microbiol Ecol 46:331–347CrossRef

17.

Cong HB, Huang TL, Chai BB, Zhao JW (2009) A new mixing–oxygenating technology for water quality improvement of urban water source and its implication in a reservoir. Renew Energy 34:2054–2060CrossRef

18.

Huang S, Chen C, Wu YY, Wu QH, Zhang RD (2011) Characterization of depth-related bacterial communities and their relationships with the environmental factors in the river sediments. World J Microbiol Biotechnol 27:2655–2664CrossRef

19.

Huang TL, Yan S, Chai BB (2011) Phosphorus forms and its distribution in source water reservoir sediment. J Tianjin Univ 44:607–612 (in Chinese)

20.

Schintu M, Kudo A, Sarritzu G, Contu A (1991) Heavy metal distribution and mobilization in sediments from a drinking water reservoir near a mining area. Water Air Soil Pollut 57–58:329–338CrossRef

21.

Palus J, Dziubałtowska E, Stańczyk M, Lewinska D, Mankiewicz-Boczek J, Izydorczyk K, Bonislawska A, Jurczak T, Zalewski M, Wasowica W (2007) Biomonitoring of cyanobacterial blooms in Polish water reservoir and the cytotoxicity and genotoxicity of selected cyanobacterial extracts. Int J Occup Environ Health 20:48–65

22.

Wei W, Huang TL, Su JF (2010) Experimental study on effectiveness and influencing factors of biological denitrification via oligotrophic biofilm system. Chin J Environ Eng 10:2179–2184 (in Chinese)

23.

Nosrati K, Govers G, Ahmadi H, Sharifi F, Amoozegar MA, Mrckx R, Vanmaercke M (2011) An exploratory study on the use of enzyme activities as sediment tracers: biochemical fingerprints? Int J Sediment Res 26:136–151CrossRef

24.

Curticapean MC, Dragan-Bularda M (2007) The enzymatic activity from the sediment of the Gilau dam reservoir—Cluj county. J Biochem Biophys Methods 69:261–272CrossRef

25.

Guan SY (1983) Soil enzyme and its analysis method. Agriculture Press, Beijing

26.

Zhang HH, Tang M, Chen H, Zheng CL (2010) Inoculation with ectomycorrhizal fungi affects microbial biomass and bacterial functional diversity in the rhizosphere of Pinus tabulaeformis seedlings. Eur J Soil Biol 46:55–61CrossRef

27.

Boschker HTS, Cappenberg TE (1998) Patterns of extracellular enzyme activities in littoral sediments of Lake Gooimeer, The Netherlands. FEMS Microbiol Ecol 25:79–86CrossRef

28.

Qu JH, Yuan HL, Huang HZ, Wang ET (2005) Depth-related distribution of bacterial community in sediments of eutrophic Guanting reservoir. Sci China D 48:276–284CrossRef

29.

Zhang HH, Huang TL, Chen SN, Guo L, Liu TT, Yang X (2014) Microbial community functional diversity and enzymatic activity in the sediments of drinking water reservoirs, Northwest China. Desalination Water Treat 52(7–9):1608–1614CrossRef

30.

Paerl HW, Pinckney JL (1996) A mini-review of microbial consortia: their roles in aquatic production and biogeochemical cycling. Microb Ecol 31:225–247CrossRef

31.

Kranzioch I, Stoll C, Holbach A, Chen H, Wang L, Zheng B (2013) Dechlorination and organohalide-respiring bacteria dynamics in sediment samples of the Yangtze Three Gorges Reservoir. Environ Sci Pollut Res Int 20:7046–7056CrossRef

32.

Röske K, Roske I, Uhlmann D (2008) Characterization of the bacterial population and chemistry in the bottom sediment of a laterally subdivided drinking water reservoir system. Limnologica 38:367–377CrossRef

33.

Röske K, Sachse R, Scheerer C (2012) Microbial diversity and composition of the sediment in the drinking water reservoir Saidenbach (Saxonia, Germany). Syst Appl Microbiol 35:35–44CrossRef

34.

Liu CM, Aziz M, Kachur S, Hsueh PR, Huang YT, Keim P, Price LB (2012) BactQuant: an enhanced broad-coverage bacterial quantitative real-time PCR assay. BMC Microbiol 12:56CrossRef

35.

Liu J, Lin Z, Zhang H, Han BP (2012) Hydrodynamic change recorded by diatoms in sediments of Liuxihe reservoir, southern China. J Pale Limnol 47:17–27

36.

Zhang HH, Huang TL, Liu TT (2013) Sediment enzyme activities and microbial community diversity in an oligotrophic drinking water reservoir, eastern China. PLoS One 8:e78571CrossRef

37.

Zhang HH, Huang TL, Yang X, Ma WX (2013) Soil dehydrogenase activity and bacterial community diversity in the water level fluctuation zone of a drinking water reservoir. J Pure Appl Microbiol 7:2451–2458

38.

Zhang HH, Huang TL, Chen SN, Guo L, Yang X, Liu TT (2013) Spatial pattern of bacterial community functional diversity in a drinking water reservoir, Shaanxi province, northwest China. J Pure Appl Microbiol 7:1647–1654

39.

Gantzer PA, Bryant LD, Little JC (2009) Controlling soluble iron and manganese in a water-supply reservoir using hypolimnetic oxygenation. Water Res 43:1285–1294CrossRef

40.

Ma Y, Guo QL, Huang TL, Tan P (2013) Response characteristics of water quality to the seasonal thermal stratification in Jin-pen reservoir along the Heihe river, Xi’an City in China. J Hydraul Eng 44:406–415

41.

Wang S, Qian X, Han BP, Luo LC, Hamilton DP (2012) Effects of local climate and hydrological conditions on the thermal regime of a reservoir at Tropic of Cancer, in southern China. Water Res 46:2591–2604CrossRef

42.

Bryant LD, Gantzer PA, Little JC (2011) Increased sediment oxygen uptake caused by oxygenation-induced hypolimnetic mixing. Water Res 45:3692–3703CrossRef

43.

Huang TL, Li X, Rijnaarts H, Grotenhuis T, Ma WX, Sun X (2014) Effects of storm runoff on the thermal regime and water quality of a deep, stratified reservoir in a temperate monsoon zone, in Northwest China. Sci Total Environ 485–486:820–827CrossRef

44.

Bryant LD, Little JC, Bürgmann H (2012) Response of sediment microbial community structure in a freshwater reservoir to manipulations in oxygen availability. FEMS Microbiol Ecol 80:248–263CrossRef

45.

Wu YC, Ke X, Hernández M, Wang B, Dumont MG, Jia Z (2013) Autotrophic growth of bacterial and archaeal ammonia oxidizers in freshwater sediment microcosms incubated at different temperatures. Appl Environ Microbiol 79:3076–3084CrossRef

46.

Zhang HH, Huang TL (2013) Archaeal community structure and quantity in the oxygen deficient sediments from three water supply reservoirs. J Pure Appl Microbiol 7:2783–2789

47.

Wang XY, Wang C, Bao LL, Xie SG (2014) Abundance and community structure of ammonia-oxidizing microorganisms in reservoir sediment and adjacent soils. Appl Microbiol Biotechnol 98:1883–1892CrossRef

48.

Zhao DY, Zeng J, Wan WH, Liang HD, Huang R (2013) Vertical distribution of ammonia-oxidizing archaea and bacteria in sediments of a Eutrophic Lake. Curr Microbiol 67:327–332CrossRef

49.

Zhu DC, Tanabe SH, Yang C, Zhang W, Sun J (2013) Bacterial community composition of south China sea sediments through pyrosequencing-based analysis of 16S rRNA genes. PLoS One 8:e7850

50.

Lay CY, Mykytczuk NC, Yergeau É, Lamarche-Gagnon G, Greer CW, Whyte LG (2013) Defining the functional potential and active community members of a sediment microbial community in a high-arctic hypersaline subzero spring. Appl Environ Microbiol 79:3637–3648CrossRef

51.

Qin CH, Huang TL, Li X (2013) Studies on the seasonal variation and budget of nitrogen, phosphorus of the Shibianyu reservoir. J Xi’an Univ Arch Technol 45:111–116 (in Chinese)

52.

Huang TL, Wei W, Su JF, Zhang HH, Li N (2012) Denitrification performance and microbial community structure of a combined WLA-OBCO system. PLoS One 7:e48339CrossRef

53.

Bao SD (1999) Soil and agricultural chemistry analysis. China Agriculture Press, Beijing, pp 125–150

54.

Nielsen AT, Liu WT, Filipe C, Grady L, Molin S, Stahl DA (1999) Identification of a novel group of bacteria in sludge from a deteriorated biological phosphorus removal reactor. Appl Environ Microbiol 65:1251–1258

55.

Dumonceaux TJ, Hill JE, Briggs SA, Amoako KK, Hemmingsen SM, Van Kessel AG (2006) Enumeration of specific bacterial populations in complex intestinal communities using quantitative PCR based on the chaperonin-60 target. J Microbiol Methods 64:46–62CrossRef

56.

Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R (2010) QIIME allows analysis of high throughput community sequencing data. Nat Methods 7:335–336CrossRef

57.

Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R (2008) Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex. Nat Methods 5:235–237CrossRef

58.

Quince C, Lanzen A, Davenport R, Turnbaugh P (2011) Removing noise from pyrosequenced amplicons. BMC Bioinformatics 12:38CrossRef

59.

Cole JR, Chai B, Farris RJ, Wang Q, Kulam-Syed-Mohideen AS (2007) The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. Nucleic Acids Res 35:169–172CrossRef

60.

Chao A, Bunge J (2002) Estimating the number of species in a stochastic abundance model. Biometrics 58:531–539CrossRef

61.

Oksanen J, Blanchet FG, Kindt R, Legendre P, Minchin PR (2012) Vegan: community ecology package, R package version, 20–23

62.

Schloss PD, Handelsman J (2006) Introducing treeclimber, a test to compare microbial community structures. Appl Environ Microbiol 72:2379–2384CrossRef

63.

Song H, Li Z, Du B, Wang G, Ding Y (2012) Bacterial communities in sediments of the shallow Lake Dongping in China. J Appl Microbiol 112:79–89CrossRef

64.

Dondajewska R (2008) Seasonal and spatial changes in phosphorus and organic matter content in bottom sediments of a shallow reservoir. Limnol Rev 8:159–164

65.

Kunz MJ, Anselmetti FS, Wüest A, Wehrli B, Vollenweider A, Thüring S (2011) Sediment accumulation and carbon, nitrogen, and phosphorus deposition in the large tropical reservoir Lake Kariba (Zambia/Zimbabwe). J Geophys Res Biogeosci 116:G03003

66.

Hupfer M, Lewandowski J (2008) Oxygen controls the phosphorus release from lake sediments—a long-lasting paradigm in limnology. Int Rev Hydrobiol 4–5:415–432CrossRef

67.

Fan CX, Morihiro A (1997) Effects of aerobic and anaerobic conditions on exchange of nitrogen and phosphorus across sediment–water interface in Lake Kasumigaura. J Lake Sci 9:337–342CrossRef

68.

Maassen S, Röske I, Uhlmann D (2003) Chemical and microbial composition of sediments in reservoirs with different trophic state. Int Rev Hydrobiol 88:508–518CrossRef

69.

Ye W, Liu X, Lin S, Tan J, Pan J, Li D (2009) The vertical distribution of bacterial and archaeal communities in the water and sediment of Lake Taihu. FEMS Microbiol Ecol 70:263–276CrossRef

70.

Brinkmeyer R, Knittel K, Jurgens J, Weyland H, Amann R, Helmke E (2003) Diversity and structure of bacterial communities in Arctic versus Antarctic pack ice. Appl Environ Microbiol 69:6610–6619CrossRef

71.

Mueller-Spitz SR, Stewart LB, Klump JV, Mclellan SL (2010) Freshwater suspended sediments and sewage are reservoirs for enterotoxin-positive Clostridium perfringens. Appl Environ Microbiol 76:5556–5562CrossRef

72.

Mulder EG, Deinema MH (2006) The genus Haliscomenobacter. Proc Natl Acad Sci U S A 7:602–604

73.

Gaval G, Pernelle JJ (2003) Impact of the repetition of oxygen deficiencies on the filamentous bacteria proliferation in activated sludge. Water Res 37:1991–2000CrossRef

74.

Smil V (2000) Cycles of life. Scientific American Library, New York

75.

Coates JD, Chakraborty R, Lack JG, O’Connor SM, Cole KA, Bender KS, Achenbach LA (2001) Anaerobic benzene oxidation coupled to nitrate reduction in pure culture by two strains of Dechloromonas. Nature 411:1039–1043CrossRef

76.

Salinero KK, Keller K, Feil WS, Feil H, Trong S, Bartolo GD, Lapidus A (2009) Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation. BMC Genomics 10:351CrossRef

77.

Coby AJ, Picardal F, Shelobolina E, Xu HF, Roden EE (2011) Repeated anaerobic microbial redox cycling of iron. Appl Environ Microbiol 77:6036–6042CrossRef

78.

Huerta B, Marti E, Gros M, López P, Pompêo M (2013) Exploring the links between antibiotic occurrence, antibiotic resistance, and bacterial communities in water supply reservoirs. Sci Total Environ 456–457:161–170CrossRef

79.

Judd KE, Crump BC, Kling GW (2006) Variation in dissolved organic matter controls bacterial production and community composition. Ecol Lett 87:2068–2079CrossRef

80.

Zhang HH, Huang TL, Chen SN, Yang X, Lv K, Sekar R (2015) Abundance and diversity of bacteria in oxygen minimum drinking water reservoir sediments studied by quantitative PCR and pyrosequencing. Microb Ecol 69:618–629CrossRef

81.

Green TJ, Barnes AC, Bartkow M, Gale D, Grinham A (2011) Sediment bacteria and archaea community analysis and nutrient fluxes in a sub-tropical polymictic reservoir. Aquat Microb Ecol 65:287–302CrossRef

82.

Song K, Lee SH, Kong H (2011) Denitrification rates and community structure of denitrifying bacteria in newly constructed wetland. Eur J Soil Biol 47:24–29CrossRef

83.

Yang J, Jiang HC, Dong HL, Wu G, Hou WG (2013) Diversity of carbon monoxide-oxidizing bacteria in five lakes on the Qinghai-Tibet Plateau, China. Geomicrobiol J 30:758–767CrossRef

84.

Carolina C, Renato I, Franco V, Giulio P (2013) Bacterial communities in polluted seabed sediments: a molecular biology assay in leghorn harbor. Sci World J 2013:165706

85.

Laurence H, Mauro T, Jakob Z, Peduzzi R, Wildi W (2011) Composition of bacterial and archaeal communities in freshwater sediments with different contamination levels (Lake Geneva, Switzerland). Water Res 45:1213–1228CrossRef

86.

Foulquier A, Volat B, Neyra M, Bornette G, Montuelle B (2013) Long-term impact of hydrological regime on structure and functions of microbial communities in riverine wetland sediments. FEMS Microbiol Ecol 85:211–226CrossRef

87.

Sanchez-Andrea I, Stams AJM, Amils R, Sanz JL (2013) Enrichment and isolation of acidophilic sulfate-reducing bacteria from Tinto River sediments. Environ Microbiol 5:672–678

88.

Ulfig K (1995) A statistical evaluation of the occurrence of keratinolytic fungi in the sediments of two dam reservoirs. Rocz Panstw Zakl Hig 46:81–89

89.

Douma M, Ouahid Y, del Campo FF, Loudiki M, Mouhri KH (2010) Identification and quantification of cyanobacterial toxins (microcystins) in two Moroccan drinking-water reservoirs (Mansour Eddahbi, Almassira). Environ Monit Assess 160:439–445CrossRef

90.

Loman NJ, Misra RV, Dallman TJ, Constantinidou C, Gharbia SE (2012) Performance comparison of benchtop high-throughput sequencing platforms. Nat Biotechnol J 30:434–439CrossRef

91.

Rousk J, Baath E, Brookes PC, Lauber CL, Lozupone C (2010) Soil bacterial and fungal communities across a pH gradient in an arable soil. ISME J 4:1340–1351CrossRef

92.

Dollive S, Chen Y-Y, Grunberg S, Bittinger K, Hoffmann C (2013) Fungi of the murine gut: episodic variation and proliferation during antibiotic treatment. PLoS One 8:e71806CrossRef

93.

Bellemain E, Carlsen T, Brochmann C, Coissac E, Taberlet P, Kauserud H (2010) ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases. BMC Microbiol 10:189CrossRef

94.

La Duc MT, Vaishampayan P, Nilsson HR, Torok T, Venkateswaran K (2012) Pyrosequencing-derived bacterial, archaeal, and fungal diversity of spacecraft hardware destined for Mars. Appl Environ Microbiol 16:5912–5922CrossRef

95.

Nilsson R, Ryberg M, Abarenkov K, Sjvist E, Kristiansson E (2009) The ITS region as a target for characterization of fungal communities using emerging sequencing technologies. FEMS Microbiol Lett 296:97–101CrossRef

96.

Porter TM, Schadt CW, Rizvi L, Martin AP, Schmidt SK (2008) Widespread occurrence and phylogenetic placement of a soil clone group adds a prominent new branch to the fungal tree of life. Mol Phylogenet Evol 46:635–644CrossRef

97.

Krauss GJ, Solé M, Krauss G, Schlosser D, Wesenberg D, Bärlocher F (2011) Fungi in freshwaters: ecology, physiology and biochemical potential. FEMS Microbiol Lett 35:620–651CrossRef

98.

Kiziewicz B (2004) Water fungi occurence in the water reservoir in Zarzeczany of Podlasie province. Wiad Parazytol 50:587–593

99.

Pereira VJ, Basílio MC, Fernandes D, Domingues M, Paiva JM (2009) Occurrence of filamentous fungi and yeasts in three different drinking water sources. Water Res 43:3813–3819CrossRef

100.

Egge E, Bittner L, Andersen T, Audic S, de Vargas C (2013) 454 pyrosequencing to describe microbial eukaryotic community composition, diversity and relative abundance: a test for marine haptophytes. PLoS One 8:e74371CrossRef

101.

Ranković B (2005) Five Serbian reservoirs contain different fungal propagules. Mycologia 97:50–56CrossRef

102.

Hou DK, He J, Lü CW, Sun Y, Zhang FJ, Otgonbayar K (2013) Effects of environmental factors on nutrients release at sediment–water interface and assessment of trophic status for a typical shallow lake, Northwest China. Sci World J. Article ID 716342

103.

Nagahama T, Hamamoto M, Horikoshi K (2006) Rhodotorula pacifica sp nov. a novel yeast species from sediment collected on the deep-sea floor of the north-west Pacific Ocean. Int J Syst Evol Microbiol 56:295–299CrossRef

104.

Freeman KR, Martin AP, Karki D, Lyncha RC, Mitter MS (2009) Evidence that chytrids dominate fungal communities in high-elevation soils. Proc Natl Acad Sci U S A 106:18315–18329CrossRef

105.

Hodge A (2000) Microbial ecology of the arbuscular mycorrhiza. FEMS Microbiol Ecol 32:91–96CrossRef

106.

Anderson RS, Homola RL, Davis RB, Jacobson GL Jr (1984) Fossil remains of the mycorrhizal fungal Glomus fasciculatum complex in postglacial lake sediments from Maine. Can J Bot 62:2325–2328CrossRef

107.

Kagami M, Amano Y, Ishii N (2012) Community structure of planktonic fungi and the impact of parasitic chytrids on phytoplankton in Lake Inba, Japan. Microb Ecol 63:358–368CrossRef

108.

Bertrand C, Couté A, Cazaubon A (2004) Fungal parasitism of the diatom Asterionella formosa Hassall (Bacillariophyceae) by Chytridiomycota. Ann Limnol Int J Limnol 40:63–69CrossRef

109.

Fernández C, Parodi ER, Cáceres EJ (2011) Impact of the fungal parasite Rhizophydium couchii (Chytridiomycota) on the population dynamics of the freshwater alga Closterium aciculare (Chlorophyta). Nova Hedwigia 93:1–2CrossRef

110.

Bates ST, Berg-Lyons D, Caporaso JG, Walters WA, Knight R (2011) Examining the global distribution of dominant archaeal populations in soil. ISME J 5:908–917CrossRef

111.

Cao HL, Hong YG, Li M, Gu JD (2011) Phylogenetic diversity and ecological pattern of ammonia-oxidizing archaea in the surface sediments of the Western Pacific. Microb Ecol 62:813–823CrossRef

112.

Leininger S, Urich DA, Schloter M, Schwark L, Qi J, Nicol GW (2006) Archaea predominate among ammonia oxidizing prokaryotes in soils. Nature 442:806–809CrossRef

113.

Choi KH, Dobbs FC (1999) Comparison of two kinds of Biolog microplates (GN and ECO) in their ability to distinguish among aquatic microbial communities. J Microbiol Methods 36:203–213CrossRef

114.

Christopher Q, Anders L, Thomas PC, Russell JD, Neil H, Ian MH, Fiona R, William TS (2009) Accurate determination of microbial diversity from 454 pyrosequencing data. Nat Methods 6:639–641CrossRef

115.

Luo C, Tsementzi D, Kyrpides N, Read T, Konstantinidis KT (2012) Direct comparisons of Illumina vs Roche 454 sequencing technologies on the same microbial community DNA sample. PLoS One 7:e30087CrossRef

116.

Wirth R, Kovács E, Maróti G, Bagi Z, Rákhely G, Kovács KL (2012) Characterization of a biogas-producing microbial community by short-read next generation DNA sequencing. Biotechnol Biofuels 5:41CrossRef

117.

Koizumi Y, Takii S, Fukui M (2004) Depth-related change in archaeal community structure in a freshwater lake sediment as determined with denaturing gradient gel electrophoresis of amplified 16S rRNA genes and reversely transcribed rRNA fragments. FEMS Microbiol Ecol 48:285–292CrossRef

118.

Li ZX, Jin WB, Liang ZY, Yue YY, Lv JH (2013) Abundance and diversity of ammonia-oxidizing archaea in response to various habitats in Pearl River Delta of China, a subtropical maritime zone. J Environ Sci Technol 25:1195–1205

119.

Lloyd KG, Schreiber L, Petersen DG, Kjeldsen KU, Lever MA, Steen AD, Stepanauskas R, Richter M, Kleindienst S, Lenk S, Schramm A, Jørgensen BB (2013) Predominant archaea in marine sediments degrade detrital proteins. Nature 496:215–218CrossRef

120.

Tang C, Madigan MT, Lanoil B (2013) Bacterial and archaeal diversity in sediments of West Lake Bonney, McMurdo Dry Valleys, Antarctica. Appl Environ Microbiol 79:1034–1038CrossRef

121.

Wang P, Li T, Hu AY, Wei YL, Guo WT, Jiao NZ, Zhang CL (2010) Community structure of archaea from deep-sea sediments of the South China Sea. Microb Ecol 60:796–806CrossRef

122.

Andrea KB, Michael DJL, Jennifer CS, Gabriel MH, Josh DN (2011) Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end Illumina reads. Appl Environ Microbiol 77:3846–3852CrossRef

123.

Borrel G, Lehours AC, Crouzet O, Jézéquel D, Rockne K, Kulczak A, Duffaud E, Joblin K, Fonty G (2012) Stratification of archaea in the deep sediments of a freshwater meromictic lake: vertical shift from methanogenic to uncultured archaeal lineages. PLoS One 8:e43346CrossRef

124.

Sanz-Montero ME, Rodríguez-Aranda JP (2012) Magnesite formation by microbial activity: evidence from a Miocene hypersaline lake. Sediment Geol 263–264:6–15CrossRef

125.

Pereira VJ, Fernandes D, Carvalho G, Benoliel MJ, San Romão MV, Barreto Crespo MT (2010) Assessment of the presence and dynamics of fungi in drinking water sources using cultural and molecular methods. Water Res 44:4850–4859CrossRef

126.

Gallina AA, Celussi M, Del Negro P (2011) Large-scale distribution and production of bacterioplankton in the Adriatic Sea. J Sea Res 66:1–8CrossRef

127.

Stabili L, Cavallo RA (2011) Microbial pollution indicators and culturable heterotrophic bacteria in a Mediterranean area (Southern Adriatic Sea Italian coasts). J Sea Res 65:461–469CrossRef

128.

Gentès S, Monperrus M, Legeay A, Maury-Brachet R, Davail S, André JM, Guyoneaud R (2013) Incidence of invasive macrophytes on methylmercury budget in temperate lakes: central role of bacterial periphytic communities. Environ Pollut 172:116–123CrossRef

129.

Wilhelm SW, Farnsley SE, LeCleir GR, Layton AC, Satchwell MF, DeBruyn JM, Boyer GL, Zhu GW, Paerl HW (2011) The relationships between nutrients, cyanobacterial toxins and the microbial community in Taihu (Lake Tai), China. Harmful Algae 10:207–215CrossRef

130.

Bouvy M, Arfi R, Bernard C, Carré C, Got P, Pagano M, Troussellier M (2010) Estuarine microbial community characteristics as indicators of human-induced changes (Senegal River, West Africa). Estuar Coast Shelf Sci 87:573–582CrossRef

131.

Yu Y, Wang H, Liu J, Wang Q, Shen TL, Guo WH, Wang RQ (2012) Shifts in microbial community function and structure along the successional gradient of coastal wetlands in Yellow River Estuary. Eur J Soil Biol 49:12–21CrossRef

132.

Sura S, Waiser M, Tumber V, Farenhorst A (2012) Effects of herbicide mixture on microbial communities in prairie wetland ecosystems: a whole wetland approach. Sci Total Environ 435–436:34–43CrossRef

133.

Li GY, Jiang HC, Hou WG, Wang S, Huang LQ, Ren HL, Deng SC, Dong HL (2012) Microbial diversity in two cold springs on the Qinghai-Tibetan Plateau. Geosci Front 3:317–325CrossRef

134.

Li WH, Tian YZ, Shi GL, Guo CS, Li X, Feng YC (2012) Concentrations and sources of PAHs in surface sediments of the Fenhe reservoir and watershed, China. Ecotoxicol Environ Saf 75:198–206 (in Chinese)CrossRef

135.

Niederberger TD, Ronimus RS, Morgan HW (2008) The microbial ecology of a high-temperature near-neutral spring situated in Rotorua. Microbiol Res 163:594–603CrossRef

136.

Kerstin R, Rene S, Carola S, Röske I (2012) Microbial diversity and composition of the sediment in the drinking water reservoir Saidenbach (Saxonia, Germany). Syst Appl Microbiol 35:35–44CrossRef

137.

Siba H, Schmieder K, Reinhard B (2010) Spatial patterns of submerged macrophytes and heavy metals in the hypertrophic, contaminated, shallow reservoir Lake Qattieneh/Syria. Limnologica 40:54–60CrossRef

138.

Chen C, Zhang ZC, Ding AZ, Wu JY, Xiao JF, Sun YJ (2011) Bar-coded pyrosequencing reveals the bacterial community during microcystis water bloom in Guanting Reservoir, Beijing. Procedia Eng 18:341–346CrossRef

139.

Lautenschlager K, Boon N, Wang YY, Egli T, Hammes F (2010) Overnight stagnation of drinking water in household taps induces microbial growth and changes in community composition. Water Res 40:4868–4877CrossRef

140.

Duan WW, Lou K, Zeng J, Hu R, Shi YW, He Q, Liu XC, Sun J, Chao QF (2012) Metabolic characteristics of air microbial communities from sandstorm source areas of the Taklamakan desert. Huan Jing Ke Xue 33:26–31 (in Chinese)

141.

Salomo S, Münch C, Röske I (2009) Evaluation of the metabolic diversity of microbial communities in four different filter layers of a constructed wetland with vertical flow by Biolog analysis. Water Res 43:4569–4578CrossRef

142.

Comeau AM, Harding T, Galand PE, Vincent WF, Lovejoy C (2012) Vertical distribution of microbial communities in a perennially stratified Arctic lake with saline, anoxic bottom waters. Sci Rep 2:604CrossRef

143.

Karlov DS, Marie D, Chuvochina MS, Alekhina IA, Bulat SA (2011) Microbial communities of water column of Lake Radok, East Antarctica, dominated by abundant actinobacterium “Candidatus Planktophila limnetica”. Microbiol Immunol 80:576–579

Titel: Functional Microbial Composition
verfasst von: Haihan Zhang
Verlag: Springer International Publishing
Buch: Water Pollution and Water Quality Control of Selected Chinese Reservoir Basins
Print ISBN: 978-3-319-20390-4

Electronic ISBN: 978-3-319-20391-1

Copyright-Jahr: 2016
DOI: https://doi.org/10.1007/978-3-319-20391-1_12