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Published in: Neural Processing Letters 4/2021

26-05-2021

A Robust Segmentation Method Based on Improved U-Net

Authors: Gang Sha, Junsheng Wu, Bin Yu

Published in: Neural Processing Letters | Issue 4/2021

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Abstract

Accurately reading spinal CT images is very important in clinical, but it usually costs some minutes and deeply depends on doctor’s individual experiences. In this paper, we construct a scheme for spinal fracture lesions segmentation based on U-net, by introducing attention module, combining dilated convolution and U-net to get accurate lesions segmentation. First, we present four network schemes to compete in same data set, then get the best one, DU-net(dilated convolution), which replaces original convolution layer with dilated convolution in both contraction path and expansion path of U-net, to increase receptive field for more lesions feature information. Second, we introduce attention module to DU-net for accurate lesions segmentation by focusing on specific regions to improve lesions recognition of training model. Finally, we get prediction results by trained model of lesions segmentation on test data test. The experimental results show that our presented network has a better lesions segmentation performance than U-net, which can save time and reduce patients’ suffering clinically.

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Literature
1.
go back to reference Yu J et al (2019) Hierarchical deep click feature prediction for fine-grained image recognition. IEEE Trans Pattern Anal Mach Intell 99:1–10 Yu J et al (2019) Hierarchical deep click feature prediction for fine-grained image recognition. IEEE Trans Pattern Anal Mach Intell 99:1–10
2.
go back to reference Yu J et al (2015) Crossbar-net: a novel convolutional neural network for kidney tumor segmentation in CT images. IEEE Trans Cybern 45(4):767–779CrossRef Yu J et al (2015) Crossbar-net: a novel convolutional neural network for kidney tumor segmentation in CT images. IEEE Trans Cybern 45(4):767–779CrossRef
3.
go back to reference Yu J et al (2020) SPRNet: single-pixel reconstruction for one-stage instance segmentation. IEEE Trans Cybern 99:1–12 Yu J et al (2020) SPRNet: single-pixel reconstruction for one-stage instance segmentation. IEEE Trans Cybern 99:1–12
4.
go back to reference Yu Q et al (2019) Crossbar-net: a novel convolutional neural network for kidney tumor segmentation in CT images. IEEE Trans Image Process 99:1–10MathSciNetMATH Yu Q et al (2019) Crossbar-net: a novel convolutional neural network for kidney tumor segmentation in CT images. IEEE Trans Image Process 99:1–10MathSciNetMATH
5.
go back to reference Wang Z et al (2017) Hierarchical vertex regression-based segmentation of head and neck CT images for radiotherapy planning. IEEE Trans Image Process 27(2):923–937MathSciNetCrossRef Wang Z et al (2017) Hierarchical vertex regression-based segmentation of head and neck CT images for radiotherapy planning. IEEE Trans Image Process 27(2):923–937MathSciNetCrossRef
6.
go back to reference Wang S et al (2020) CT male pelvic organ segmentation via hybrid loss network with incomplete annotation. IEEE Trans Medi Imag 99:1 Wang S et al (2020) CT male pelvic organ segmentation via hybrid loss network with incomplete annotation. IEEE Trans Medi Imag 99:1
7.
go back to reference Ronneberger O, Fischer P, Brox T (2015) ’U-Net: Convolutional networks for biomedical image segmentation,’ in Proc. MICCAI, pp:234–241 Ronneberger O, Fischer P, Brox T (2015) ’U-Net: Convolutional networks for biomedical image segmentation,’ in Proc. MICCAI, pp:234–241
8.
go back to reference Mikulka J, et al. (2020) “Pediatric Spine Segmentation and Modeling Using Machine Learning.” 2019 11th International Congress on Ultra Modern Telecommunications and Control Systems and Workshops (ICUMT) IEEE, Mikulka J, et al. (2020) “Pediatric Spine Segmentation and Modeling Using Machine Learning.” 2019 11th International Congress on Ultra Modern Telecommunications and Control Systems and Workshops (ICUMT) IEEE,
9.
go back to reference Mandal I (2015) Developing new machine learning ensembles for quality spine diagnosis. Knowldege-Based Syst 73:298–310CrossRef Mandal I (2015) Developing new machine learning ensembles for quality spine diagnosis. Knowldege-Based Syst 73:298–310CrossRef
10.
go back to reference Tej MS et al (2020) Fostering reproducibility and generalizability in machine learning for clinical prediction modeling in spine surgery. Spine J 45:256 Tej MS et al (2020) Fostering reproducibility and generalizability in machine learning for clinical prediction modeling in spine surgery. Spine J 45:256
11.
go back to reference Nam KH, et al. (2019) “Machine Learning Model to Predict Osteoporotic Spine with Hounsfield Units on Lumbar Computed Tomography.” 62 Nam KH, et al. (2019) “Machine Learning Model to Predict Osteoporotic Spine with Hounsfield Units on Lumbar Computed Tomography.” 62
12.
go back to reference Natalia F, et al. (2019) “Development of Ground Truth Data for Automatic Lumbar Spine MRI Image Segmentation.” 2018 IEEE 20th International Conference on High Performance Computing an Communications; IEEE 16th International Conference on Smart City; IEEE 4th International Conference on Data Science and Systems (HPCC/SmartCity/DSS) IEEE Natalia F, et al. (2019) “Development of Ground Truth Data for Automatic Lumbar Spine MRI Image Segmentation.” 2018 IEEE 20th International Conference on High Performance Computing an Communications; IEEE 16th International Conference on Smart City; IEEE 4th International Conference on Data Science and Systems (HPCC/SmartCity/DSS) IEEE
13.
go back to reference Khan O et al (2020) Machine learning algorithms for prediction of health-related quality-of-life after surgery for mild degenerative cervical myelopathy. Spine J 56:28 Khan O et al (2020) Machine learning algorithms for prediction of health-related quality-of-life after surgery for mild degenerative cervical myelopathy. Spine J 56:28
14.
go back to reference Omar K et al (2020) Prediction of worse functional status after surgery for degenerative cervical myelopathy: a machine learning approach. Neurosurgery 888:584 Omar K et al (2020) Prediction of worse functional status after surgery for degenerative cervical myelopathy: a machine learning approach. Neurosurgery 888:584
15.
go back to reference Lee S et al (2020) The exploration of feature extraction and machine learning for predicting bone density from simple spine X-ray images in a Korean population. Skeletal Radiol 49:613CrossRef Lee S et al (2020) The exploration of feature extraction and machine learning for predicting bone density from simple spine X-ray images in a Korean population. Skeletal Radiol 49:613CrossRef
16.
go back to reference Shuang Y, et al. (2014) “Feature extraction and classification for ultrasound images of lumbar spine with support vector machine.” IEEE Shuang Y, et al. (2014) “Feature extraction and classification for ultrasound images of lumbar spine with support vector machine.” IEEE
17.
go back to reference Wang Z, Zhang Z, Voiculescu I (2020) “RRA-U-Net: a Residual Encoder to Attention Decoder by Residual Connections Framework for Spine Segmentation under Noisy Labels.” Wang Z, Zhang Z, Voiculescu I (2020) “RRA-U-Net: a Residual Encoder to Attention Decoder by Residual Connections Framework for Spine Segmentation under Noisy Labels.”
18.
go back to reference Tang H et al (2020) Automatic lumbar spinal CT image segmentation with a dual densely connected U-Net. IEEE Access 99:1 Tang H et al (2020) Automatic lumbar spinal CT image segmentation with a dual densely connected U-Net. IEEE Access 99:1
19.
go back to reference Li H et al (2021) Automatic lumbar spinal MRI image segmentation with a multi-scale attention network. Neural Comput Appl 10:1–14 Li H et al (2021) Automatic lumbar spinal MRI image segmentation with a multi-scale attention network. Neural Comput Appl 10:1–14
20.
go back to reference Sewon, et al. (2018) “U-net%convolutional neural network%deep learning%fine grain segmentation%intervertebral disc%lumbar spine%magnetic resonance image%segmentation.” Applied sciences (Basel, Switzerland) Sewon, et al. (2018) “U-net%convolutional neural network%deep learning%fine grain segmentation%intervertebral disc%lumbar spine%magnetic resonance image%segmentation.” Applied sciences (Basel, Switzerland)
21.
go back to reference Huang J et al (2019) Spine explorer: a deep learning based fully automated program for efficient and reliable quantifications of the vertebrae and discs on sagittal lumbar spine MR images. Spine J 20:4 Huang J et al (2019) Spine explorer: a deep learning based fully automated program for efficient and reliable quantifications of the vertebrae and discs on sagittal lumbar spine MR images. Spine J 20:4
22.
go back to reference Korez R et al (2015) A framework for automated spine and vertebrae interpolation-based detection and model-based segmentation. IEEE Trans Med Imag 34(8):1649–1662CrossRef Korez R et al (2015) A framework for automated spine and vertebrae interpolation-based detection and model-based segmentation. IEEE Trans Med Imag 34(8):1649–1662CrossRef
23.
go back to reference Lessmann N, Ginneken BV, Isgum I “Iterative convolutional neural networks for automatic vertebra identification and segmentation in CT images.” SPIE Medical Imaging Conference Lessmann N, Ginneken BV, Isgum I “Iterative convolutional neural networks for automatic vertebra identification and segmentation in CT images.” SPIE Medical Imaging Conference
24.
go back to reference Arif Smmra, Knapp K, Slabaugh G (2018) Fully automatic cervical vertebrae segmentation framework for X-ray images. Computer Methods Program Biomed 157:56 Arif Smmra, Knapp K, Slabaugh G (2018) Fully automatic cervical vertebrae segmentation framework for X-ray images. Computer Methods Program Biomed 157:56
25.
go back to reference Ebrahimi S (2017) “Contribution to automatic adjustments of vertebrae landmarks on x-ray images for 3D reconstruction and quantification of clinical indices.” Ebrahimi S (2017) “Contribution to automatic adjustments of vertebrae landmarks on x-ray images for 3D reconstruction and quantification of clinical indices.”
26.
go back to reference Chen Y et al (2019) Vertebrae identification and localization utilizing fully convolutional networks and a hidden Markov model. IEEE Trans Med Imag 99:10 Chen Y et al (2019) Vertebrae identification and localization utilizing fully convolutional networks and a hidden Markov model. IEEE Trans Med Imag 99:10
27.
go back to reference Wang X, Zhai S, Niu Y (2019) Automatic vertebrae localization and identification by combining deep SSAE contextual features and structured regression forest. J Digital Imag 32:336CrossRef Wang X, Zhai S, Niu Y (2019) Automatic vertebrae localization and identification by combining deep SSAE contextual features and structured regression forest. J Digital Imag 32:336CrossRef
28.
go back to reference Li S et al (2020) Multi-task relational learning network for MRI vertebral localization, identification and segmentation. IEEE J Biomed Health Inform 99:1 Li S et al (2020) Multi-task relational learning network for MRI vertebral localization, identification and segmentation. IEEE J Biomed Health Inform 99:1
29.
go back to reference Shi D, et al. (2018) “Automatic Localization and Segmentation of Vertebral Bodies in 3D CT Volumes with Deep Learning.” the 2nd International Symposium Shi D, et al. (2018) “Automatic Localization and Segmentation of Vertebral Bodies in 3D CT Volumes with Deep Learning.” the 2nd International Symposium
30.
go back to reference Lu JT, et al. (2018) “DeepSPINE: Automated Lumbar Vertebral Segmentation, Disc-level Designation, and Spinal Stenosis Grading Using Deep Learning.” Lu JT, et al. (2018) “DeepSPINE: Automated Lumbar Vertebral Segmentation, Disc-level Designation, and Spinal Stenosis Grading Using Deep Learning.”
31.
go back to reference Rak M et al (2019) Combining convolutional neural networks and star convex cuts for fast whole spine vertebra segmentation in MRI. Computer Methods Programs Biomed 177:47–56CrossRef Rak M et al (2019) Combining convolutional neural networks and star convex cuts for fast whole spine vertebra segmentation in MRI. Computer Methods Programs Biomed 177:47–56CrossRef
33.
go back to reference Yu F, Koltun V (2016) Multi-Scale Context Aggregation by Dilated Convolutions Yu F, Koltun V (2016) Multi-Scale Context Aggregation by Dilated Convolutions
34.
go back to reference Jie H, et al. (2017) “Squeeze-and-Excitation Networks.” IEEE Transactions on Pattern Analysis and Machine Intelligence PP.99 Jie H, et al. (2017) “Squeeze-and-Excitation Networks.” IEEE Transactions on Pattern Analysis and Machine Intelligence PP.99
35.
go back to reference Chuang CH (2019) Efficient triple output network for vertebral segmentation and identification. IEEE Access 7:117978CrossRef Chuang CH (2019) Efficient triple output network for vertebral segmentation and identification. IEEE Access 7:117978CrossRef
Metadata
Title
A Robust Segmentation Method Based on Improved U-Net
Authors
Gang Sha
Junsheng Wu
Bin Yu
Publication date
26-05-2021
Publisher
Springer US
Published in
Neural Processing Letters / Issue 4/2021
Print ISSN: 1370-4621
Electronic ISSN: 1573-773X
DOI
https://doi.org/10.1007/s11063-021-10531-9

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