Skip to main content
Top

2017 | OriginalPaper | Chapter

Brain Tumor Segmentation from Multimodal MR Images Using Rough Sets

Authors : Rupsa Saha, Ashish Phophalia, Suman K. Mitra

Published in: Computer Vision, Graphics, and Image Processing

Publisher: Springer International Publishing

Activate our intelligent search to find suitable subject content or patents.

search-config
loading …

Abstract

Automatic segmentation of brain tumors from Magnetic Resonance images is a challenging task due to the wide variation in intensity, size, location of tumors in images. Defining a precise boundary for a tumor is essential for diagnosis and treatment of patients. Rough set theory, an extension of classical set theory, deals with the vagueness of data by determining the boundary region of a set. The aim of this work is to explore the possibility and effectiveness of using a rough set model to represent the tumor regions in MR images accurately, with Quadtree partitioning and simple K-means as precursors to indicate and limit the possible relevant regions. The advantage of using rough sets lie in its ability to represent the impreciseness of set boundaries, which is one of the major challenges faced in tumor segmentation. Experiments are carried out on the BRATS 2013 and 2015 databases and results are comparable to those reported by recent works.

Dont have a licence yet? Then find out more about our products and how to get one now:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literature
1.
go back to reference Khosla, D.: Concurrent therapy to enhance radiotherapeutic outcomes in glioblastoma. Ann. Transl. Med. 4(3) (2016) Khosla, D.: Concurrent therapy to enhance radiotherapeutic outcomes in glioblastoma. Ann. Transl. Med. 4(3) (2016)
2.
go back to reference Krupa, K., Bekiesińska-Figatowska, M.: Artifacts in magnetic resonance imaging. Pol. J. Radiol. 80, 93 (2015)CrossRef Krupa, K., Bekiesińska-Figatowska, M.: Artifacts in magnetic resonance imaging. Pol. J. Radiol. 80, 93 (2015)CrossRef
3.
go back to reference Schild, H.H.: MRI Made Easy. Berlex Laboratories, Whippany (1999) Schild, H.H.: MRI Made Easy. Berlex Laboratories, Whippany (1999)
4.
go back to reference Vovk, U., Pernuš, F., Likar, B.: A review of methods for correction of intensity inhomogeneity in MRI. IEEE Trans. Med. Imaging 26(3), 405–421 (2007)CrossRef Vovk, U., Pernuš, F., Likar, B.: A review of methods for correction of intensity inhomogeneity in MRI. IEEE Trans. Med. Imaging 26(3), 405–421 (2007)CrossRef
5.
go back to reference Christine Fennema-Notestine, I., Ozyurt, B., Clark, C.P., Morris, S., Bischoff-Grethe, A., Bondi, M.W., Jernigan, T.L., Fischl, B., Segonne, F., Shattuck, D.W., et al.: Quantitative evaluation of automated skull-stripping methods applied to contemporary and legacy images: effects of diagnosis, bias correction, and slice location. Hum. Brain Mapp. 27(2), 99–113 (2006)CrossRef Christine Fennema-Notestine, I., Ozyurt, B., Clark, C.P., Morris, S., Bischoff-Grethe, A., Bondi, M.W., Jernigan, T.L., Fischl, B., Segonne, F., Shattuck, D.W., et al.: Quantitative evaluation of automated skull-stripping methods applied to contemporary and legacy images: effects of diagnosis, bias correction, and slice location. Hum. Brain Mapp. 27(2), 99–113 (2006)CrossRef
6.
go back to reference Stadlbauer, A., Moser, E., Gruber, S., Buslei, R., Nimsky, C., Fahlbusch, R., Ganslandt, O.: Improved delineation of brain tumors: an automated method for segmentation based on pathologic changes of 1 H-MRSI metabolites in gliomas. Neuroimage 23(2), 454–461 (2004)CrossRef Stadlbauer, A., Moser, E., Gruber, S., Buslei, R., Nimsky, C., Fahlbusch, R., Ganslandt, O.: Improved delineation of brain tumors: an automated method for segmentation based on pathologic changes of 1 H-MRSI metabolites in gliomas. Neuroimage 23(2), 454–461 (2004)CrossRef
7.
go back to reference Kaus, M.R., Warfield, S.K., Nabavi, A., Black, P.M., Jolesz, F.A., Kikinis, R.: Automated segmentation of MR images of brain tumors. Radiology 218(2), 586–591 (2001)CrossRef Kaus, M.R., Warfield, S.K., Nabavi, A., Black, P.M., Jolesz, F.A., Kikinis, R.: Automated segmentation of MR images of brain tumors. Radiology 218(2), 586–591 (2001)CrossRef
8.
go back to reference Gibbs, P., Buckley, D.L., Blackband, S.J., Horsman, A.: Tumour volume determination from mr images by morphological segmentation. Phys. Med. Biol. 41(11), 2437 (1996)CrossRef Gibbs, P., Buckley, D.L., Blackband, S.J., Horsman, A.: Tumour volume determination from mr images by morphological segmentation. Phys. Med. Biol. 41(11), 2437 (1996)CrossRef
9.
go back to reference Nakhmani, A., Kikinis, R., Tannenbaum, A.: MRI brain tumor segmentation and necrosis detection using adaptive sobolev snakes. In: SPIE Medical Imaging, p. 903442. International Society for Optics and Photonics (2014) Nakhmani, A., Kikinis, R., Tannenbaum, A.: MRI brain tumor segmentation and necrosis detection using adaptive sobolev snakes. In: SPIE Medical Imaging, p. 903442. International Society for Optics and Photonics (2014)
10.
go back to reference Gordillo, N., Montseny, E., Sobrevilla, P.: State of the art survey on MRI brain tumor segmentation. Magn. Reson. Imaging 31(8), 1426–1438 (2013)CrossRef Gordillo, N., Montseny, E., Sobrevilla, P.: State of the art survey on MRI brain tumor segmentation. Magn. Reson. Imaging 31(8), 1426–1438 (2013)CrossRef
11.
go back to reference Hall, L.O., Bensaid, A.M., Clarke, L.P., Velthuizen, R.P., Silbiger, M.S., Bezdek, J.C.: A comparison of neural network, fuzzy clustering techniques in segmenting magnetic resonance images of the brain. IEEE Transactions on Neural Networks 3(5), 672–682 (1992) Hall, L.O., Bensaid, A.M., Clarke, L.P., Velthuizen, R.P., Silbiger, M.S., Bezdek, J.C.: A comparison of neural network, fuzzy clustering techniques in segmenting magnetic resonance images of the brain. IEEE Transactions on Neural Networks 3(5), 672–682 (1992)
12.
go back to reference Zhou, J., Chan, K.L., Chong, V.F.H., Krishnan, S.M.: Extraction of brain tumor from MR images using one-class support vector machine. In: 27th Annual International Conference of the Engineering in Medicine and Biology Society. IEEE-EMBS 2005, pp. 6411–6414. IEEE (2006) Zhou, J., Chan, K.L., Chong, V.F.H., Krishnan, S.M.: Extraction of brain tumor from MR images using one-class support vector machine. In: 27th Annual International Conference of the Engineering in Medicine and Biology Society. IEEE-EMBS 2005, pp. 6411–6414. IEEE (2006)
13.
go back to reference Cabezas, M., Oliver, A., Lladó, X., Freixenet, J., Cuadra, M.B.: A review of atlas-based segmentation for magnetic resonance brain images. Comput. Methods Prog. Biomed. 104(3), e158–e177 (2011)CrossRef Cabezas, M., Oliver, A., Lladó, X., Freixenet, J., Cuadra, M.B.: A review of atlas-based segmentation for magnetic resonance brain images. Comput. Methods Prog. Biomed. 104(3), e158–e177 (2011)CrossRef
14.
go back to reference Hirano, S., Tsumoto, S.: Segmentation of medical images based on approximations in rough set theory. In: Alpigini, J.J., Peters, J.F., Skowron, A., Zhong, N. (eds.) RSCTC 2002. LNCS, vol. 2475, pp. 554–563. Springer, Heidelberg (2002). doi:10.1007/3-540-45813-1_73 CrossRef Hirano, S., Tsumoto, S.: Segmentation of medical images based on approximations in rough set theory. In: Alpigini, J.J., Peters, J.F., Skowron, A., Zhong, N. (eds.) RSCTC 2002. LNCS, vol. 2475, pp. 554–563. Springer, Heidelberg (2002). doi:10.​1007/​3-540-45813-1_​73 CrossRef
15.
go back to reference Maji, P., Roy, S.: Rough-fuzzy clustering and unsupervised feature selection for wavelet based MR image segmentation. PLoS ONE 10(4), e0123677 (2015)CrossRef Maji, P., Roy, S.: Rough-fuzzy clustering and unsupervised feature selection for wavelet based MR image segmentation. PLoS ONE 10(4), e0123677 (2015)CrossRef
16.
go back to reference Pawlak, Z.: Rough sets. Int. J. Parallel Program. 11, 341–356 (1982)MATH Pawlak, Z.: Rough sets. Int. J. Parallel Program. 11, 341–356 (1982)MATH
17.
go back to reference Menze, B., et al.: The multimodal brain tumor image segmentation benchmark (BRATS). IEEE Trans. Med. Imaging, 33 (2014) Menze, B., et al.: The multimodal brain tumor image segmentation benchmark (BRATS). IEEE Trans. Med. Imaging, 33 (2014)
18.
go back to reference Kistler, M., Bonaretti, S., Pfahrer, M., Niklaus, R., Büchler, P.: The virtual skeleton database: an open access repository for biomedical research and collaboration. J. Med. Internet Res. 15(11), e245 (2013)CrossRef Kistler, M., Bonaretti, S., Pfahrer, M., Niklaus, R., Büchler, P.: The virtual skeleton database: an open access repository for biomedical research and collaboration. J. Med. Internet Res. 15(11), e245 (2013)CrossRef
19.
go back to reference Menze, B.H., et al.: The multimodal brain tumor image segmentation benchmark (BRATS). IEEE Trans. Med. Imaging 34(10), 1993–2024 (2015)CrossRef Menze, B.H., et al.: The multimodal brain tumor image segmentation benchmark (BRATS). IEEE Trans. Med. Imaging 34(10), 1993–2024 (2015)CrossRef
20.
go back to reference MICCAI. MICCAI Brain Tumor Image Segmentation Challenge-BRATS, Boston, Massachusetts, September 2014 MICCAI. MICCAI Brain Tumor Image Segmentation Challenge-BRATS, Boston, Massachusetts, September 2014
Metadata
Title
Brain Tumor Segmentation from Multimodal MR Images Using Rough Sets
Authors
Rupsa Saha
Ashish Phophalia
Suman K. Mitra
Copyright Year
2017
DOI
https://doi.org/10.1007/978-3-319-68124-5_12

Premium Partner