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2014 | OriginalPaper | Chapter

CodeMagic: Semi-Automatic Assignment of ICD-10-AM Codes to Patient Records

Authors : Damla Arifoğlu, Onur Deniz, Kemal Aleçakır, Meltem Yöndem

Published in: Information Sciences and Systems 2014

Publisher: Springer International Publishing

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Abstract

In this study, we present a recommendation system for semiautomatic assignment of ICD-10-AM codes to free-text patient records. Only expert annotators can assign codes to medical texts, and the lack of standardization of medical documentation and language specific problems make the assignment process even more challenging. Our system assigns a set of top k ICD codes for each document by exploiting the idea of bag-of-words and by using Lucene search engine and Borda Count voting schema. Before the code assignment task, we preprocess patient records to form query bags. Experiments on a set of clinical records show that promising results are possible for semiautomatic assignment of ICD codes.

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Footnotes
1
We would like to thank to the Hospital of Ankara Numune Eğitim ve Araştırma and Hacettepe University Hospital.
 
2
“Patient History,” “Surgery Notes,” “Consultation,” “Patient History,” “Radiology,” “Diagnosis”.
 
Literature
1.
go back to reference K. Crammer, M. Dredze, K. Ganchev, P.P. Talukdar, S. Carroll, Automatic code assignment to medical text, in Proceedings of the Workshop on BioNLP 2007: Biological, Translational and Clinical Language Processing, pp. 129–136 (2007) K. Crammer, M. Dredze, K. Ganchev, P.P. Talukdar, S. Carroll, Automatic code assignment to medical text, in Proceedings of the Workshop on BioNLP 2007: Biological, Translational and Clinical Language Processing, pp. 129–136 (2007)
2.
go back to reference N. Lavrac, Selected techniques for data mining in medicine, in Proceedings of the Ninth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, vol. 16, p. 23 (1999) N. Lavrac, Selected techniques for data mining in medicine, in Proceedings of the Ninth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, vol. 16, p. 23 (1999)
3.
go back to reference K.J.M. Janssen et al., Missing covariate data in medical research: to impute is better than to ignore. J. Clin. Epidemiol 63, 721–727 (2010)CrossRef K.J.M. Janssen et al., Missing covariate data in medical research: to impute is better than to ignore. J. Clin. Epidemiol 63, 721–727 (2010)CrossRef
4.
go back to reference O. Deniz, Ontology based text mining in Turkish radiology reports (Master’s Thesis, Middle East Technical University, Turkey, 2011) O. Deniz, Ontology based text mining in Turkish radiology reports (Master’s Thesis, Middle East Technical University, Turkey, 2011)
5.
go back to reference 2007 International Challenge: Classifying clinical free text using natural language processing 2007 International Challenge: Classifying clinical free text using natural language processing
6.
go back to reference I. Goldstein, A. Arzumtsyan, O. Uzuner, Three approaches to automatic assignment of ICD-9-CM codes to radiology reports, in Proceedings of the Fall Symposium of the American Medical Informatics Association, Chicago, Illinois, USA, American Medical Informatics Association, pp. 279–283 (2007) I. Goldstein, A. Arzumtsyan, O. Uzuner, Three approaches to automatic assignment of ICD-9-CM codes to radiology reports, in Proceedings of the Fall Symposium of the American Medical Informatics Association, Chicago, Illinois, USA, American Medical Informatics Association, pp. 279–283 (2007)
7.
go back to reference R. Farkas, G. Szarvas, Automatic construction of rule-based ICD-9-CM coding systems. BMC Bioinformatics S–3, 9 (2008) R. Farkas, G. Szarvas, Automatic construction of rule-based ICD-9-CM coding systems. BMC Bioinformatics S–3, 9 (2008)
8.
go back to reference J. Patrick, Y. Zhang, Y. Wang, Developing feature types for classifying clinical notes, in Proceedings of the Workshop on BioNLP 2007: Biological, Translational, and Clinical Language Processing, pp. 191–192 (2007) J. Patrick, Y. Zhang, Y. Wang, Developing feature types for classifying clinical notes, in Proceedings of the Workshop on BioNLP 2007: Biological, Translational, and Clinical Language Processing, pp. 191–192 (2007)
9.
go back to reference S. Boytcheva, Automatic matching of ICD-10 codes to diagnoses in discharge letters, in Proceedings of the Second Workshop on Biomedical Natural Language Processing, pp. 19–26 (2011) S. Boytcheva, Automatic matching of ICD-10 codes to diagnoses in discharge letters, in Proceedings of the Second Workshop on Biomedical Natural Language Processing, pp. 19–26 (2011)
10.
go back to reference E. Soysal, I. Cicekli, N. Baykal, Design and evaluation of an ontology based information extraction system for radiological reports. Comput. Biol. Med. 40, 900–911 (2010)CrossRef E. Soysal, I. Cicekli, N. Baykal, Design and evaluation of an ontology based information extraction system for radiological reports. Comput. Biol. Med. 40, 900–911 (2010)CrossRef
11.
go back to reference A.A. Akin, M.D. Akin, Zemberek, an open source NLP framework for Turkic languages. (2007) A.A. Akin, M.D. Akin, Zemberek, an open source NLP framework for Turkic languages. (2007)
12.
go back to reference R.B. Rao, S. Sandilya, R.S. Niculescu, Clinical and financial outcomes analysis with existing hospital patient records, in Proceedings of the Ninth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, pp. 416–425 (2003) R.B. Rao, S. Sandilya, R.S. Niculescu, Clinical and financial outcomes analysis with existing hospital patient records, in Proceedings of the Ninth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, pp. 416–425 (2003)
14.
go back to reference M.V. Erp, L. Schomaker, Variants of the borda count method for combining ranked classifier hypotheses, in The Seventh Intenational Workshop on Frontiers in Handwriting Recognition, pp. 443–452 (2000) M.V. Erp, L. Schomaker, Variants of the borda count method for combining ranked classifier hypotheses, in The Seventh Intenational Workshop on Frontiers in Handwriting Recognition, pp. 443–452 (2000)
Metadata
Title
CodeMagic: Semi-Automatic Assignment of ICD-10-AM Codes to Patient Records
Authors
Damla Arifoğlu
Onur Deniz
Kemal Aleçakır
Meltem Yöndem
Copyright Year
2014
DOI
https://doi.org/10.1007/978-3-319-09465-6_27

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