Skip to main content
Top
Published in: Advances in Data Analysis and Classification 1/2023

04-04-2022 | Regular Article

Early identification of biliary atresia using subspace and the bootstrap methods

Authors: Kuniyoshi Hayashi, Eri Hoshino, Mitsuyoshi Suzuki, Kotomi Sakai, Masayuki Obatake, Osamu Takahashi

Published in: Advances in Data Analysis and Classification | Issue 1/2023

Log in

Activate our intelligent search to find suitable subject content or patents.

search-config
loading …

Abstract

In clinical medicine, physicians often rely on information derived from medical imaging systems, such as image data for diagnosis. To detect disease early, physicians extract essential information from data manually to distinguish accurately between positive and negative cases of disease. In recent years, deep learning (DL) has been used for this purpose, attracting the attention of prominent researchers because of its excellent performance. Consequently, DL and other artificial intelligence (AI) technologies are expected to develop further through integration with statistical and other approaches. Here, we examine biliary atresia (BA), a rare disease that affects primarily infants. Our study focuses on the identification of BA from image data (stool images of BA patients). Using AI and statistical approaches, we propose a machine learning classifier (model) for accurate diagnosis, efficient classification, and early detection of BA after exposure to limited training data. In an initial study, we used the subspace pattern recognition method for the development of a similar classifier. In this study, we propose the development of a filter based on the subspace method and a statistical approach. The filter enables the classifier to extract essential information from image data and discriminate efficiently between BA and non-BA patients.

Dont have a licence yet? Then find out more about our products and how to get one now:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literature
go back to reference Chen SM, Chang MH, Du JC, Lin CC, Chen AC, Lee HC, Lau BH, Yang YJ, Wu TC, Chu CH, Lai MW, Chen HL, The Taiwan Infant Stool Color Card Study Group (2006) Screening for biliary atresia by infant stool color card in Taiwan. Pediatrics 117(4):1147–1154CrossRef Chen SM, Chang MH, Du JC, Lin CC, Chen AC, Lee HC, Lau BH, Yang YJ, Wu TC, Chu CH, Lai MW, Chen HL, The Taiwan Infant Stool Color Card Study Group (2006) Screening for biliary atresia by infant stool color card in Taiwan. Pediatrics 117(4):1147–1154CrossRef
go back to reference Choi BC (1998) Slopes of a receiver operating characteristic curve and likelihood ratios for a diagnostic test. Am J Epidemiol 148(11):1127–1132CrossRef Choi BC (1998) Slopes of a receiver operating characteristic curve and likelihood ratios for a diagnostic test. Am J Epidemiol 148(11):1127–1132CrossRef
go back to reference DeLong ER, DeLong DM, Clarke-Pearson DL (1988) Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach. Biometrics 44(3):837–845 DeLong ER, DeLong DM, Clarke-Pearson DL (1988) Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach. Biometrics 44(3):837–845
go back to reference Diaz-Chito K, Ferri FJ, Hernández-Sabaté A (2018) An overview of incremental feature extraction methods based on linear subspaces. Knowl Based Syst 145:219–235 Diaz-Chito K, Ferri FJ, Hernández-Sabaté A (2018) An overview of incremental feature extraction methods based on linear subspaces. Knowl Based Syst 145:219–235
go back to reference Efron B (1981) Nonparametric estimates of standard error: the jackknife, the bootstrap and other methods. Biometrika 68(3):589–599 Efron B (1981) Nonparametric estimates of standard error: the jackknife, the bootstrap and other methods. Biometrika 68(3):589–599
go back to reference Franciscovich A, Vaidya D, Doyle J, Bolinger J, Capdevila M, Rice M, Hancock L, Mahr T, Mogul DB (2015) PoopMD, a mobile health application, accurately identifies infant acholic stools. PLoS One 10(7):e0132270CrossRef Franciscovich A, Vaidya D, Doyle J, Bolinger J, Capdevila M, Rice M, Hancock L, Mahr T, Mogul DB (2015) PoopMD, a mobile health application, accurately identifies infant acholic stools. PLoS One 10(7):e0132270CrossRef
go back to reference Goodfellow I, Bengio Y, Courville A (2016) Deep learning. The MIT Press, Cambridge, MassachusettsMATH Goodfellow I, Bengio Y, Courville A (2016) Deep learning. The MIT Press, Cambridge, MassachusettsMATH
go back to reference Gu YH, Yokoyama K, Mizuta K, Tsuchioka T, Kudo T, Sasaki H, Nio M, Tang J, Ohkubo T, Matsui A (2015) Stool color card screening for early detection of biliary atresia and long-term native liver survival: a 19-year cohort study in Japan. J Pediatr 166(4):897–902.e1 Gu YH, Yokoyama K, Mizuta K, Tsuchioka T, Kudo T, Sasaki H, Nio M, Tang J, Ohkubo T, Matsui A (2015) Stool color card screening for early detection of biliary atresia and long-term native liver survival: a 19-year cohort study in Japan. J Pediatr 166(4):897–902.e1
go back to reference Hartley JL, Davenport M, Kelly DA (2009) Biliary atresia. Lancet 374(9702):1704–1713 Hartley JL, Davenport M, Kelly DA (2009) Biliary atresia. Lancet 374(9702):1704–1713
go back to reference Hastie T, Tibshirani R, Friedman J (2001) The elements of statistical learning, vol 1. Springer, Berlin Hastie T, Tibshirani R, Friedman J (2001) The elements of statistical learning, vol 1. Springer, Berlin
go back to reference Hoshino E, Hayashi K, Suzuki M, Obatake M, Urayama KY, Nakano S, Taura Y, Nio M, Takahashi O (2017) An iPhone application using a novel stool color detection algorithm for biliary atresia screening. Pediatr Surg Int 33(10):1115–1121 Hoshino E, Hayashi K, Suzuki M, Obatake M, Urayama KY, Nakano S, Taura Y, Nio M, Takahashi O (2017) An iPhone application using a novel stool color detection algorithm for biliary atresia screening. Pediatr Surg Int 33(10):1115–1121
go back to reference Hsiao CH, Chang MH, Chen HL, Lee HC, Wu TC, Lin CC, Yang YJ, Chen AC, Tiao MM, Lau BH, Chu CH, Lai MW, the Taiwan Infant Stool Color Card Study Group (2008) Universal screening for biliary atresia using an infant stool color card in Taiwan. Hepatology 47(4):1233–1240 Hsiao CH, Chang MH, Chen HL, Lee HC, Wu TC, Lin CC, Yang YJ, Chen AC, Tiao MM, Lau BH, Chu CH, Lai MW, the Taiwan Infant Stool Color Card Study Group (2008) Universal screening for biliary atresia using an infant stool color card in Taiwan. Hepatology 47(4):1233–1240
go back to reference Ihaka R, Gentleman R (1996) R: a language for data analysis and graphics. J Comput Graph Stat 5(3):299–314 Ihaka R, Gentleman R (1996) R: a language for data analysis and graphics. J Comput Graph Stat 5(3):299–314
go back to reference Jimenez-Rivera C, Jolin-Dahel KS, Fortinsky KJ, Gozdyra P, Benchimol EI (2013) International incidence and outcomes of biliary atresia. J Pediatr Gastroenterol Nutr 56(4):344–354CrossRef Jimenez-Rivera C, Jolin-Dahel KS, Fortinsky KJ, Gozdyra P, Benchimol EI (2013) International incidence and outcomes of biliary atresia. J Pediatr Gastroenterol Nutr 56(4):344–354CrossRef
go back to reference Kasai M, Kimura S, Asakura Y, Suzuki H, Taira Y, Ohashi E (1968) Surgical treatment of biliary atresia. J Pediatr Surg 3(6):665–675CrossRef Kasai M, Kimura S, Asakura Y, Suzuki H, Taira Y, Ohashi E (1968) Surgical treatment of biliary atresia. J Pediatr Surg 3(6):665–675CrossRef
go back to reference Li Y, Lam F, Clifford B, Liang ZP (2017) A subspace approach to spectral quantification for MR spectroscopic imaging. IEEE Trans Biomed Eng 64(10):2486–2489CrossRef Li Y, Lam F, Clifford B, Liang ZP (2017) A subspace approach to spectral quantification for MR spectroscopic imaging. IEEE Trans Biomed Eng 64(10):2486–2489CrossRef
go back to reference Lu L, Zheng Y, Carneiro G, Yang L (eds) (2017) Deep learning and convolutional neural networks for medical image computing. Advances in Computer Vision and Pattern Recognition. Springer, Switzerland Lu L, Zheng Y, Carneiro G, Yang L (eds) (2017) Deep learning and convolutional neural networks for medical image computing. Advances in Computer Vision and Pattern Recognition. Springer, Switzerland
go back to reference Matsui A, Dodoriki M (1995) Screening for biliary atresia. Lancet 345(8958):1181 Matsui A, Dodoriki M (1995) Screening for biliary atresia. Lancet 345(8958):1181
go back to reference Oja E (1983) Subspace methods of pattern recognition. Research Studies Press, England Oja E (1983) Subspace methods of pattern recognition. Research Studies Press, England
go back to reference Schreiber RA, Masucci L, Kaczorowski J, Collet JP, Lutley P, Espinosa V, Bryan S (2014) Home-based screening for biliary stresia using infant stool colour cards: a large-scale prospective cohort study and cost-effectiveness analysis. J Med Screen 21(3):126–132CrossRef Schreiber RA, Masucci L, Kaczorowski J, Collet JP, Lutley P, Espinosa V, Bryan S (2014) Home-based screening for biliary stresia using infant stool colour cards: a large-scale prospective cohort study and cost-effectiveness analysis. J Med Screen 21(3):126–132CrossRef
go back to reference Watanabe S, Pakvasa N (1973) Subspace method of pattern recognition. In: Proceedings of the 1st International Joint Conference on Pattern Recognition, pp 25–32 Watanabe S, Pakvasa N (1973) Subspace method of pattern recognition. In: Proceedings of the 1st International Joint Conference on Pattern Recognition, pp 25–32
go back to reference Watanabe S, Lambert PF, Kulikowski CA, Buxton JL, Walker R (1967) Evaluation and selection of variables in pattern recognition. In: Tou J (ed) Computer and Information Science II. Academic Press, New York, pp 91–122 Watanabe S, Lambert PF, Kulikowski CA, Buxton JL, Walker R (1967) Evaluation and selection of variables in pattern recognition. In: Tou J (ed) Computer and Information Science II. Academic Press, New York, pp 91–122
go back to reference Wu F, Jing XY, Wu S, Gao G, Ge Q, Wang R (2018) “Like charges repulsion and opposite charges attraction” law based multilinear subspace analysis for face recognition. Knowl Based Syst 149:76–87 Wu F, Jing XY, Wu S, Gao G, Ge Q, Wang R (2018) “Like charges repulsion and opposite charges attraction” law based multilinear subspace analysis for face recognition. Knowl Based Syst 149:76–87
go back to reference Xie L, Yin M, Wang L, Tan F, Yin G (2018) Matrix regression preserving projections for robust feature extraction. Knowl Based Syst 161:35–46CrossRef Xie L, Yin M, Wang L, Tan F, Yin G (2018) Matrix regression preserving projections for robust feature extraction. Knowl Based Syst 161:35–46CrossRef
Metadata
Title
Early identification of biliary atresia using subspace and the bootstrap methods
Authors
Kuniyoshi Hayashi
Eri Hoshino
Mitsuyoshi Suzuki
Kotomi Sakai
Masayuki Obatake
Osamu Takahashi
Publication date
04-04-2022
Publisher
Springer Berlin Heidelberg
Published in
Advances in Data Analysis and Classification / Issue 1/2023
Print ISSN: 1862-5347
Electronic ISSN: 1862-5355
DOI
https://doi.org/10.1007/s11634-022-00493-8

Other articles of this Issue 1/2023

Advances in Data Analysis and Classification 1/2023 Go to the issue

Premium Partner