Skip to main content
Top

2010 | OriginalPaper | Chapter

2. From the Gas Phase to a Lipid Membrane Environment: DFT and MD Simulations of Structure and Dynamics of Hydrogen-Bonded Solvates of Bifunctional Heteroazaaromatic Compounds

Authors : Alexander Kyrychenko, Jacek Waluk

Published in: Kinetics and Dynamics

Publisher: Springer Netherlands

Activate our intelligent search to find suitable subject content or patents.

search-config
loading …

Abstract

We present a review of our recent developments in computational modeling of hydrogen-bonding-induced phenomena in a series of biologically relevant bifunctional proton donor–acceptor heteroazaaromatic compounds. Different types of hydrogen-bonded solvates, in which water or alcohol molecules form a bridge connecting the proton donor (pyrrole NH group) and the acceptor (pyridine or quinoline nitrogen) atoms of bifunctional solutes, are explored by combining density functional theory (DFT) and molecular dynamics (MD) simulation approaches. Structure and dynamics of multiple hydrogen-bonded solute-solvent complexes are studied starting from isolated complexes in the gas phase, elucidating their solvation dynamics in solutions and, finally, in a heterogeneous environment of a lipid bilayer. Our results indicate that the structure, stoichiometry and hydrogen bond strength in such solvates are tuned by local topologies of the hydrogen-bonding sites of a bifunctional proton donor–acceptor molecule. A role of such solvates in hydrogen-bond-dependent photophysics and in controlling excited-state behavior of heteroazaaromatic compounds is discussed.

Dont have a licence yet? Then find out more about our products and how to get one now:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literature
1.
2.
go back to reference Chou PT (2001) J Chin Chem Soc 48:651–682 Chou PT (2001) J Chin Chem Soc 48:651–682
3.
go back to reference Nosenko E, Wiosna-Sałyga G, Kunitski M, Petkova I, Singh A, Buma WJ, Thummel RP, Brutschy B, Waluk J (2008) Angew Chem Int Ed Engl 47:6037–6040 Nosenko E, Wiosna-Sałyga G, Kunitski M, Petkova I, Singh A, Buma WJ, Thummel RP, Brutschy B, Waluk J (2008) Angew Chem Int Ed Engl 47:6037–6040
4.
go back to reference Kijak M, Nosenko E, Singh A, Thummel RP, Waluk J (2007) J Am Chem Soc 129:2738–2739 Kijak M, Nosenko E, Singh A, Thummel RP, Waluk J (2007) J Am Chem Soc 129:2738–2739
5.
go back to reference Wiosna-Sałyga G, Dobkowski J, Mudadu MS, Sazanovich I, Thummel RP, Waluk J (2006) Chem Phys Lett 423:288–292 Wiosna-Sałyga G, Dobkowski J, Mudadu MS, Sazanovich I, Thummel RP, Waluk J (2006) Chem Phys Lett 423:288–292
6.
go back to reference Kijak M, Zielińska A, Chamchoumis C, Herbich J, Thummel RP, Waluk J (2004) Chem Phys Lett 400:279–285 Kijak M, Zielińska A, Chamchoumis C, Herbich J, Thummel RP, Waluk J (2004) Chem Phys Lett 400:279–285
7.
go back to reference Wiosna G, Petkova I, Mudadu MS, Thummel RP, Waluk J (2004) Chem Phys Lett 400:379–383 Wiosna G, Petkova I, Mudadu MS, Thummel RP, Waluk J (2004) Chem Phys Lett 400:379–383
8.
go back to reference Herbich J, Dobkowski J, Thummel RP, Henge V, Waluk J (1997) J Phys Chem A 101:5839–5845 Herbich J, Dobkowski J, Thummel RP, Henge V, Waluk J (1997) J Phys Chem A 101:5839–5845
9.
go back to reference Kyrychenko A, Herbich J, Izydorzak M, Gil M, Dobkowski J, Wu FY, Thummel RP, Waluk J (1999) Isr J Chem 39:309–318 Kyrychenko A, Herbich J, Izydorzak M, Gil M, Dobkowski J, Wu FY, Thummel RP, Waluk J (1999) Isr J Chem 39:309–318
10.
go back to reference del Valle JC, Dominguez E, Kasha M (1999) J Phys Chem A 103:2467–2475 del Valle JC, Dominguez E, Kasha M (1999) J Phys Chem A 103:2467–2475
11.
go back to reference Marks D, Zhang H, Borowicz P, Waluk J, Glasbeek M (2000) J Phys Chem A 104:7167–7175 Marks D, Zhang H, Borowicz P, Waluk J, Glasbeek M (2000) J Phys Chem A 104:7167–7175
12.
go back to reference Kijak M, Zielińska A, Thummel RP, Herbich J, Waluk J (2002) Chem Phys Lett 366:329–335 Kijak M, Zielińska A, Thummel RP, Herbich J, Waluk J (2002) Chem Phys Lett 366:329–335
13.
go back to reference Herbich J, Kijak M, Luboradzki R, Gil M, Zielińska A, Hu YZ, Thummel RP, Waluk J (2002) J Photochem Photobiol: A Chem 154:61–68 Herbich J, Kijak M, Luboradzki R, Gil M, Zielińska A, Hu YZ, Thummel RP, Waluk J (2002) J Photochem Photobiol: A Chem 154:61–68
14.
go back to reference Taylor CL, El-Bayoumi MA, Kasha M (1969) Proc Natl Acad Sci USA 63:253–260 Taylor CL, El-Bayoumi MA, Kasha M (1969) Proc Natl Acad Sci USA 63:253–260
15.
go back to reference Douhal A, Kim SK, Zewail AH (1995) Nature 378:260–263 Douhal A, Kim SK, Zewail AH (1995) Nature 378:260–263
16.
go back to reference Folmer DE, Poth L, Wisniewski ES, Castleman AW Jr (1998) Chem Phys Lett 278:1–7 Folmer DE, Poth L, Wisniewski ES, Castleman AW Jr (1998) Chem Phys Lett 278:1–7
17.
go back to reference Takeuchi S, Tahara T (1998) J Phys Chem A 102:7740–7753 Takeuchi S, Tahara T (1998) J Phys Chem A 102:7740–7753
18.
go back to reference Takeuchi S, Tahara T (2001) Chem Phys Lett 347:108–114 Takeuchi S, Tahara T (2001) Chem Phys Lett 347:108–114
19.
go back to reference Fiebig T, Chachisvilis M, Manger M, Zewail AH, Douhal A, Garcia-Ochoa I, de La Hoz AA (1999) J Phys Chem A 103:7419–7431 Fiebig T, Chachisvilis M, Manger M, Zewail AH, Douhal A, Garcia-Ochoa I, de La Hoz AA (1999) J Phys Chem A 103:7419–7431
20.
go back to reference Folmer DE, Wisniewski ES, Castleman AW Jr (2000) Chem Phys Lett 318:637–643 Folmer DE, Wisniewski ES, Castleman AW Jr (2000) Chem Phys Lett 318:637–643
21.
go back to reference Catalán J, del Valle JC, Kasha M (1999) Proc Natl Acad Sci USA 96:8338–8343 Catalán J, del Valle JC, Kasha M (1999) Proc Natl Acad Sci USA 96:8338–8343
22.
go back to reference Catalán J, Pérez P, del Valle JC, de Paz JLG, Kasha M (2002) Proc Natl Acad Sci USA 99:5793–5798 Catalán J, Pérez P, del Valle JC, de Paz JLG, Kasha M (2002) Proc Natl Acad Sci USA 99:5793–5798
23.
go back to reference Takeuchi S, Tahara T (2007) Proc Natl Acad Sci USA 104:5285–5290 Takeuchi S, Tahara T (2007) Proc Natl Acad Sci USA 104:5285–5290
24.
go back to reference Kwon OH, Zewail AH (2007) Proc Natl Acad Sci USA 104:8703–8708 Kwon OH, Zewail AH (2007) Proc Natl Acad Sci USA 104:8703–8708
25.
go back to reference Catalán J (2008) Proc Natl Acad Sci USA 105:E78 Catalán J (2008) Proc Natl Acad Sci USA 105:E78
26.
go back to reference Kwon OH, Zewail AH (2008) Proc Natl Acad Sci USA 105:E79 Kwon OH, Zewail AH (2008) Proc Natl Acad Sci USA 105:E79
27.
go back to reference Sekiya H, Sakota K (2008) J Photochem Photobiol: C Photochem Rev 9:81–91 Sekiya H, Sakota K (2008) J Photochem Photobiol: C Photochem Rev 9:81–91
28.
go back to reference Fang WH (1998) J Am Chem Soc 316:7568–7576 Fang WH (1998) J Am Chem Soc 316:7568–7576
29.
go back to reference Kohtani S, Tagami A, Nakagaki R (2000) Chem Phys Lett 316:88–93 Kohtani S, Tagami A, Nakagaki R (2000) Chem Phys Lett 316:88–93
30.
go back to reference Matsumoto Y, Ebata T, Mikami N (2002) J Phys Chem A 106:5591–5599 Matsumoto Y, Ebata T, Mikami N (2002) J Phys Chem A 106:5591–5599
31.
go back to reference Meuwly M, Bach A, Leutwyler S (2001) J Am Chem Soc 123:11446–11453 Meuwly M, Bach A, Leutwyler S (2001) J Am Chem Soc 123:11446–11453
32.
go back to reference Coussan S, Meuwly M, Leutwyler S (2001) J Chem Phys 114:3524–3534 Coussan S, Meuwly M, Leutwyler S (2001) J Chem Phys 114:3524–3534
33.
go back to reference Tanner C, Manca C, Leutwyler S (2003) Science 302:1736–1739 Tanner C, Manca C, Leutwyler S (2003) Science 302:1736–1739
34.
go back to reference Bach A, Tanner C, Manca C, Frey HM, Leutwyler S (2003) J Chem Phys 119:5933–5942 Bach A, Tanner C, Manca C, Frey HM, Leutwyler S (2003) J Chem Phys 119:5933–5942
35.
go back to reference Manca C, Tanner C, Coussan S, Bach A, Leutwyler S (2004) J Chem Phys 121:2578–2590 Manca C, Tanner C, Coussan S, Bach A, Leutwyler S (2004) J Chem Phys 121:2578–2590
36.
go back to reference Tanner C, Manca C, Leutwyler S (2005) J Chem Phys 122:204326/1–204326/11 Tanner C, Manca C, Leutwyler S (2005) J Chem Phys 122:204326/1–204326/11
37.
go back to reference Fernández-Ramos A, Martïnez-Núñez E, Vázquez SA, Ríos MA, Estévez CM, Merchán M, Serrano-Andrés L (2007) J Phys Chem A 111:5907–5912 Fernández-Ramos A, Martïnez-Núñez E, Vázquez SA, Ríos MA, Estévez CM, Merchán M, Serrano-Andrés L (2007) J Phys Chem A 111:5907–5912
38.
go back to reference Mehata MS (2007) Chem Phys Lett 436:357–361 Mehata MS (2007) Chem Phys Lett 436:357–361
39.
go back to reference Mehata MS (2008) J Phys Chem B 112:8383–8386 Mehata MS (2008) J Phys Chem B 112:8383–8386
40.
41.
go back to reference Vendrell O, Gelabert R, Moreno M, Lluch JM (2008) J Chem Theory Comp 4:1138–1150 Vendrell O, Gelabert R, Moreno M, Lluch JM (2008) J Chem Theory Comp 4:1138–1150
42.
go back to reference Pakhomov AA, Martynov VI (2008) Chem Biol 15:755–764 Pakhomov AA, Martynov VI (2008) Chem Biol 15:755–764
43.
go back to reference Vendrell O, Gelabert R, Moreno M, Lluch JM (2008) J Phys Chem B 112:5500–5511 Vendrell O, Gelabert R, Moreno M, Lluch JM (2008) J Phys Chem B 112:5500–5511
44.
go back to reference Vendrell O, Gelabert R, Moreno M, Lluch JM (2008) J Phys Chem B 112:13443–13452 Vendrell O, Gelabert R, Moreno M, Lluch JM (2008) J Phys Chem B 112:13443–13452
45.
go back to reference Kandori H (2000) Biochim Biophys Acta 118:177–191 Kandori H (2000) Biochim Biophys Acta 118:177–191
46.
go back to reference Sato Y, Hata M, Neya S, Hoshino T (2006) J Phys Chem B 110:22084–22812 Sato Y, Hata M, Neya S, Hoshino T (2006) J Phys Chem B 110:22084–22812
47.
go back to reference Bondar AN, Baudry J, Suhai S, Fischer F, Smith JC (2008) J Phys Chem B 112:14729–14741 Bondar AN, Baudry J, Suhai S, Fischer F, Smith JC (2008) J Phys Chem B 112:14729–14741
48.
go back to reference Serrano-Andrés L, Roos BO (1996) J Am Chem Soc 118:185–195 Serrano-Andrés L, Roos BO (1996) J Am Chem Soc 118:185–195
49.
go back to reference Sobolewski AL, Domcke W (1999) Chem Phys Lett 315:293–298 Sobolewski AL, Domcke W (1999) Chem Phys Lett 315:293–298
50.
go back to reference Kyrychenko A, Waluk J (2006) J Phys Chem A 110:11958–11967 Kyrychenko A, Waluk J (2006) J Phys Chem A 110:11958–11967
51.
go back to reference Parac M, Grimme S (2002) J Phys Chem A 106:6844–6850 Parac M, Grimme S (2002) J Phys Chem A 106:6844–6850
52.
go back to reference Hättig C, Köhn A (2002) J Chem Phys 117:6939–6951 Hättig C, Köhn A (2002) J Chem Phys 117:6939–6951
53.
go back to reference Nosenko Y, Kunitski M, Riehn C, Thummel RP, Kyrychenko A, Herbich J, Waluk J, Brutschy B (2008) J Phys Chem A 112:1150–1156 Nosenko Y, Kunitski M, Riehn C, Thummel RP, Kyrychenko A, Herbich J, Waluk J, Brutschy B (2008) J Phys Chem A 112:1150–1156
54.
go back to reference Furche C, Ahlrichs R (2002) J Chem Phys 117:7433–7447 Furche C, Ahlrichs R (2002) J Chem Phys 117:7433–7447
55.
go back to reference Kyrychenko A, Herbich J, Izydorzak M, Wu F, Thummel RP, Waluk J (1999) J Am Chem Soc 121:11179–11188 Kyrychenko A, Herbich J, Izydorzak M, Wu F, Thummel RP, Waluk J (1999) J Am Chem Soc 121:11179–11188
56.
go back to reference Kornyshev AA, Kuznetsov AM, Spohr E, Ulstrup J (2003) J Phys Chem B 107:3351–3366 Kornyshev AA, Kuznetsov AM, Spohr E, Ulstrup J (2003) J Phys Chem B 107:3351–3366
57.
58.
go back to reference Lapid H, Agmon N, Petersen MK, Voth GA (2005) J Chem Phys 122:014506/1–014506/11 Lapid H, Agmon N, Petersen MK, Voth GA (2005) J Chem Phys 122:014506/1–014506/11
59.
go back to reference Mezer A, Friedman R, Noivirt O, Nachliel E, Gutman M (2005) J Phys Chem A 109:11379–11378 Mezer A, Friedman R, Noivirt O, Nachliel E, Gutman M (2005) J Phys Chem A 109:11379–11378
60.
go back to reference Friedman R, Fischer S, Nachliel E, Scheiner S, Gutman M (2007) J Phys Chem B 111:6059–6070 Friedman R, Fischer S, Nachliel E, Scheiner S, Gutman M (2007) J Phys Chem B 111:6059–6070
61.
go back to reference Wang S, Smith SC (2006) J Phys Chem B 110:5084–5093 Wang S, Smith SC (2006) J Phys Chem B 110:5084–5093
62.
go back to reference Sakota K, Komoto Y, Nakagaki M, Ishikawa W, Sekiya H (2007) Chem Phys Lett 435:1–4 Sakota K, Komoto Y, Nakagaki M, Ishikawa W, Sekiya H (2007) Chem Phys Lett 435:1–4
63.
go back to reference Tanner C, Thut M, Steinlin A, Manca C, Leutwyler S (2006) J Phys Chem A 110:1758–1766 Tanner C, Thut M, Steinlin A, Manca C, Leutwyler S (2006) J Phys Chem A 110:1758–1766
64.
go back to reference Agmon N (2007) J Phys Chem B 111:7870–7878 Agmon N (2007) J Phys Chem B 111:7870–7878
65.
go back to reference Mente S, Frankland CJV, Reynolds L, Maroncelli M (1998) Chem Phys Lett 293:515–522 Mente S, Frankland CJV, Reynolds L, Maroncelli M (1998) Chem Phys Lett 293:515–522
66.
go back to reference Yokoyama H, Watanabe H, Omi T, Ishiuchi SI, Fujii M (2001) J Phys Chem A 105:9366–9374 Yokoyama H, Watanabe H, Omi T, Ishiuchi SI, Fujii M (2001) J Phys Chem A 105:9366–9374
67.
go back to reference Taketsugu T, Yagi K, Gordon MS (2005) Int J Quant Chem 104:758–772 Taketsugu T, Yagi K, Gordon MS (2005) Int J Quant Chem 104:758–772
68.
go back to reference Smedarchina Z, Siebrand W, Fernández-Ramos A, Gorb L, Leszczynski J (2000) J Chem Phys 112:566–573 Smedarchina Z, Siebrand W, Fernández-Ramos A, Gorb L, Leszczynski J (2000) J Chem Phys 112:566–573
69.
go back to reference Gordon MS (1996) J Phys Chem 100:3974–3979 Gordon MS (1996) J Phys Chem 100:3974–3979
70.
go back to reference Fernández-Ramos A, Smedarchina Z, Siebrand W, Zgierski MZ, Rios MA (1999) J Am Chem Soc 121:6280–6289 Fernández-Ramos A, Smedarchina Z, Siebrand W, Zgierski MZ, Rios MA (1999) J Am Chem Soc 121:6280–6289
71.
go back to reference Shukla MK, Mishra PC (1998) Chem Phys 230:187–200 Shukla MK, Mishra PC (1998) Chem Phys 230:187–200
72.
go back to reference Casadesúus R, Moreno M, Lluch JM (2003) Chem Phys 290:319–336 Casadesúus R, Moreno M, Lluch JM (2003) Chem Phys 290:319–336
73.
go back to reference Chaban GM, Gordon MS (1999) J Phys Chem A 103:185–189 Chaban GM, Gordon MS (1999) J Phys Chem A 103:185–189
74.
go back to reference Fernández-Ramos A, Smedarchina Z, Siebrand W, Zgierski MZ (2001) J Chem Phys 114:7518–7526 Fernández-Ramos A, Smedarchina Z, Siebrand W, Zgierski MZ (2001) J Chem Phys 114:7518–7526
75.
go back to reference Svartsov YN, Schmitt M (2008) J Chem Phys 128:214310/1–214310/9 Svartsov YN, Schmitt M (2008) J Chem Phys 128:214310/1–214310/9
76.
go back to reference Vu TBC, Kalkman I, Meerts WL, Svartsov YN, Jacoby C, Schmitt M (2008) J Chem Phys 128:214311/1–214311/10 Vu TBC, Kalkman I, Meerts WL, Svartsov YN, Jacoby C, Schmitt M (2008) J Chem Phys 128:214311/1–214311/10
77.
go back to reference Koizumi Y, Jouvet C, Norihiro T, Ishiuchi SI, Dedonder-Lardeux C, Fujii M (2008) J Chem Phys 129:104311/1–104311/10 Koizumi Y, Jouvet C, Norihiro T, Ishiuchi SI, Dedonder-Lardeux C, Fujii M (2008) J Chem Phys 129:104311/1–104311/10
78.
go back to reference Sakota K, Kageura Y, Sekiya H (2008) J Chem Phys 129:054303/1–054303/10 Sakota K, Kageura Y, Sekiya H (2008) J Chem Phys 129:054303/1–054303/10
79.
go back to reference Hu WP, You RM, Yen SY, Hung FT, Chou PH, Chou PT (2003) Chem Phys Lett 370:139–146 Hu WP, You RM, Yen SY, Hung FT, Chou PH, Chou PT (2003) Chem Phys Lett 370:139–146
80.
go back to reference Hung FT, Hu WP, Chou PT (2001) J Phys Chem A 105:10475–10482 Hung FT, Hu WP, Chou PT (2001) J Phys Chem A 105:10475–10482
81.
go back to reference Chou PT, Wei CY, Chang CP, Meng-Shin K (1995) J Phys Chem 99:11994–12000 Chou PT, Wei CY, Chang CP, Meng-Shin K (1995) J Phys Chem 99:11994–12000
82.
go back to reference Herbich J, Hung CY, Thummel RP, Waluk J (1996) J Am Chem Soc 118:3508–3518 Herbich J, Hung CY, Thummel RP, Waluk J (1996) J Am Chem Soc 118:3508–3518
83.
go back to reference Kyrychenko A, Stepanenko Y, Waluk J (2000) J Phys Chem A 104:9542–9555 Kyrychenko A, Stepanenko Y, Waluk J (2000) J Phys Chem A 104:9542–9555
84.
go back to reference Nosenko Y, Kunitski M, Thummel RP, Kyrychenko A, Herbich J, Waluk J, Riehn C, Brutschy B (2006) J Am Chem Soc 128:10000–10001 Nosenko Y, Kunitski M, Thummel RP, Kyrychenko A, Herbich J, Waluk J, Riehn C, Brutschy B (2006) J Am Chem Soc 128:10000–10001
85.
go back to reference Nosenko Y, Kyrychenko A, Thummel RP, Waluk J, Brutschy B, Herbich J (2007) Phys Chem Chem Phys 9:3276–3285 Nosenko Y, Kyrychenko A, Thummel RP, Waluk J, Brutschy B, Herbich J (2007) Phys Chem Chem Phys 9:3276–3285
86.
go back to reference Weigend F, Häser M, Patzelt H, Ahlrichs R (1998) Chem Phys Lett 294:143–152 Weigend F, Häser M, Patzelt H, Ahlrichs R (1998) Chem Phys Lett 294:143–152
87.
go back to reference Schäfer A, Huber C, Ahlrichs R (1994) J Chem Phys 100:5829–5835 Schäfer A, Huber C, Ahlrichs R (1994) J Chem Phys 100:5829–5835
88.
go back to reference Manca C, Tanner C, Leutwyler S (2005) Int Rev Phys Chem 24:457–488 Manca C, Tanner C, Leutwyler S (2005) Int Rev Phys Chem 24:457–488
89.
go back to reference Mente S, Maroncelli M (1998) J Phys Chem A 102:3860–3876 Mente S, Maroncelli M (1998) J Phys Chem A 102:3860–3876
90.
go back to reference Scott WRP, Hünenberger PH, Tironi IG, Mark AI, Billeter SR, Fennen J, Torda AE, Huber T, Krüger P, van Gunsteren WF (1999) J Phys Chem A 103:3596–3607 Scott WRP, Hünenberger PH, Tironi IG, Mark AI, Billeter SR, Fennen J, Torda AE, Huber T, Krüger P, van Gunsteren WF (1999) J Phys Chem A 103:3596–3607
91.
go back to reference Sobolewski AL, Domcke W, Dedonder-Lardeux C, Jouvet C (2002) Phys Chem Chem Phys 4:1093–1100 Sobolewski AL, Domcke W, Dedonder-Lardeux C, Jouvet C (2002) Phys Chem Chem Phys 4:1093–1100
92.
go back to reference Sobolewski AL, Domcke W (2007) J Phys Chem A 111:11725–11735 Sobolewski AL, Domcke W (2007) J Phys Chem A 111:11725–11735
93.
go back to reference Rode MF, Sobolewski AL (2008) Chem Phys 347:413–421 Rode MF, Sobolewski AL (2008) Chem Phys 347:413–421
94.
go back to reference Lan Z, Frutos LM, Sobolewski AL, Domcke W (2008) Proc Natl Acad Sci USA 105:12707–12712 Lan Z, Frutos LM, Sobolewski AL, Domcke W (2008) Proc Natl Acad Sci USA 105:12707–12712
95.
go back to reference Yau WM, Wimley WC, Gawrisch K, White SH (1998) Biochemistry 37:14713–14718 Yau WM, Wimley WC, Gawrisch K, White SH (1998) Biochemistry 37:14713–14718
96.
go back to reference Grossfield A, Woolf TB (2002) Langmuir 18:198–210 Grossfield A, Woolf TB (2002) Langmuir 18:198–210
97.
go back to reference Gaede HC, Yau WM, Gawrisch K (2005) J Phys Chem B 109:13014–13023 Gaede HC, Yau WM, Gawrisch K (2005) J Phys Chem B 109:13014–13023
98.
go back to reference Smirnov AV, English DS, Rich RL, Lane J, Teyton L, Schwabacher AW, Luo S, Thornburg RW, Petrich JW (1997) J Phys Chem B 101:2758–2769 Smirnov AV, English DS, Rich RL, Lane J, Teyton L, Schwabacher AW, Luo S, Thornburg RW, Petrich JW (1997) J Phys Chem B 101:2758–2769
99.
go back to reference Kyrychenko A, Waluk J (2008) Biophys Chem 136:128–135 Kyrychenko A, Waluk J (2008) Biophys Chem 136:128–135
100.
go back to reference Tieleman DP, Berendsen HJC (1996) J Chem Phys 105:4871–4880 Tieleman DP, Berendsen HJC (1996) J Chem Phys 105:4871–4880
101.
go back to reference Tieleman DP, Marrink SJ, Berendsen HJC (1997) Biochim Biophys Acta 1331:235–270 Tieleman DP, Marrink SJ, Berendsen HJC (1997) Biochim Biophys Acta 1331:235–270
102.
go back to reference Rodríguez-Prieto F, Mosquera M, Novo M (1990) J Phys Chem 94:8536–8542 Rodríguez-Prieto F, Mosquera M, Novo M (1990) J Phys Chem 94:8536–8542
103.
go back to reference Mukherjee TK, Ahuja P, Koner AL, Datta A (2005) J Phys Chem A 109:12567–12573 Mukherjee TK, Ahuja P, Koner AL, Datta A (2005) J Phys Chem A 109:12567–12573
104.
go back to reference Mukherjee TK, Panda D, Datta A (2005) J Phys Chem A 109:18895–18901 Mukherjee TK, Panda D, Datta A (2005) J Phys Chem A 109:18895–18901
105.
go back to reference Ulander J, Haymet ADJ (2003) Biophys J 85:3475–3484 Ulander J, Haymet ADJ (2003) Biophys J 85:3475–3484
106.
go back to reference Milhaud J (2004) Biochim Biophys Acta 1663:19–51 Milhaud J (2004) Biochim Biophys Acta 1663:19–51
107.
go back to reference Berkowitz ML, Bostick BL, Pandit S (2006) Chem Rev 106:1527–1539 Berkowitz ML, Bostick BL, Pandit S (2006) Chem Rev 106:1527–1539
108.
go back to reference Kwon OH, Jang DJ (2005) J Phys Chem B 109:20479–20484 Kwon OH, Jang DJ (2005) J Phys Chem B 109:20479–20484
109.
go back to reference Kyrychenko A, Herbich J, Wu F, Thummel RP, Waluk J (2000) J Am Chem Soc 122:2818–2827 Kyrychenko A, Herbich J, Wu F, Thummel RP, Waluk J (2000) J Am Chem Soc 122:2818–2827
110.
go back to reference Kyrychenko A, Waluk J (2003) J Chem Phys 119:7318–7327 Kyrychenko A, Waluk J (2003) J Chem Phys 119:7318–7327
111.
go back to reference Kyrychenko A, Gorski A, Waluk J (2004) J Chem Phys 121:12017–12025 Kyrychenko A, Gorski A, Waluk J (2004) J Chem Phys 121:12017–12025
112.
go back to reference Kyrychenko A, Waluk J (2005) J Chem Phys 123:064706/1–064706/10 Kyrychenko A, Waluk J (2005) J Chem Phys 123:064706/1–064706/10
113.
go back to reference Kyrychenko A, Gawinkowski S, Urbańska N, Pietraszkiewicz M, Waluk J (2007) J Chem Phys 127:134501/1–134501/12 Kyrychenko A, Gawinkowski S, Urbańska N, Pietraszkiewicz M, Waluk J (2007) J Chem Phys 127:134501/1–134501/12
Metadata
Title
From the Gas Phase to a Lipid Membrane Environment: DFT and MD Simulations of Structure and Dynamics of Hydrogen-Bonded Solvates of Bifunctional Heteroazaaromatic Compounds
Authors
Alexander Kyrychenko
Jacek Waluk
Copyright Year
2010
Publisher
Springer Netherlands
DOI
https://doi.org/10.1007/978-90-481-3034-4_2

Premium Partner