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2016 | OriginalPaper | Chapter

Gland Instance Segmentation by Deep Multichannel Side Supervision

Authors : Yan Xu, Yang Li, Mingyuan Liu, Yipei Wang, Maode Lai, Eric I-Chao Chang

Published in: Medical Image Computing and Computer-Assisted Intervention – MICCAI 2016

Publisher: Springer International Publishing

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Abstract

In this paper, we propose a new image instance segmentation method that segments individual glands (instances) in colon histology images. This is a task called instance segmentation that has recently become increasingly important. The problem is challenging since not only do the glands need to be segmented from the complex background, they are also required to be individually identified. Here we leverage the idea of image-to-image prediction in recent deep learning by building a framework that automatically exploits and fuses complex multichannel information, regional and boundary patterns, with side supervision (deep supervision on side responses) in gland histology images. Our proposed system, deep multichannel side supervision (DMCS), alleviates heavy feature design due to the use of convolutional neural networks guided by side supervision. Compared to methods reported in the 2015 MICCAI Gland Segmentation Challenge, we observe state-of-the-art results based on a number of evaluation metrics.

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Literature
1.
go back to reference Chen, H., Qi, X., Yu, L., Heng, P.A.: Dcan: deep contour-aware networks for accurate gland segmentation. In: CVPR (2016) Chen, H., Qi, X., Yu, L., Heng, P.A.: Dcan: deep contour-aware networks for accurate gland segmentation. In: CVPR (2016)
2.
go back to reference Dai, J., He, K., Sun, J.: Instance-aware semantic segmentation via multi-task network cascades. In: CVPR (2016) Dai, J., He, K., Sun, J.: Instance-aware semantic segmentation via multi-task network cascades. In: CVPR (2016)
3.
go back to reference Dimopoulos, S., Mayer, C.E., Rudolf, F., Stelling, J.: Accurate cell segmentation in microscopy images using membrane patterns. Bioinformatics 30(18), 2644–2651 (2014)CrossRef Dimopoulos, S., Mayer, C.E., Rudolf, F., Stelling, J.: Accurate cell segmentation in microscopy images using membrane patterns. Bioinformatics 30(18), 2644–2651 (2014)CrossRef
4.
5.
go back to reference Jia, Y., Shelhamer, E., Donahue, J., Karayev, S., Long, J., Girshick, R., Guadarrama, S., Darrell, T.: Caffe: convolutional architecture for fast feature embedding. In: ICM (2014) Jia, Y., Shelhamer, E., Donahue, J., Karayev, S., Long, J., Girshick, R., Guadarrama, S., Darrell, T.: Caffe: convolutional architecture for fast feature embedding. In: ICM (2014)
6.
go back to reference Koltun, V.: Efficient inference in fully connected crfs with gaussian edge potentials. In: NIPS (2011) Koltun, V.: Efficient inference in fully connected crfs with gaussian edge potentials. In: NIPS (2011)
7.
go back to reference Krizhevsky, A., Sutskever, I., Hinton, G.E.: Imagenet classification with deep convolutional neural networks. In: NIPS (2012) Krizhevsky, A., Sutskever, I., Hinton, G.E.: Imagenet classification with deep convolutional neural networks. In: NIPS (2012)
8.
go back to reference Long, J., Shelhamer, E., Darrell, T.: Fully convolutional networks for semantic segmentation. In: CVPR (2015) Long, J., Shelhamer, E., Darrell, T.: Fully convolutional networks for semantic segmentation. In: CVPR (2015)
9.
go back to reference Ronneberger, O., Fischer, P., Brox, T.: U-Net: convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 234–241. Springer, Heidelberg (2015). doi:10.1007/978-3-319-24574-4_28 CrossRef Ronneberger, O., Fischer, P., Brox, T.: U-Net: convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 234–241. Springer, Heidelberg (2015). doi:10.​1007/​978-3-319-24574-4_​28 CrossRef
10.
go back to reference Simonyan, K., Zisserman, A.: Very deep convolutional networks for large-scale image recognition. In: ICLR (2015) Simonyan, K., Zisserman, A.: Very deep convolutional networks for large-scale image recognition. In: ICLR (2015)
11.
go back to reference Sirinukunwattana, K., Pluim, J.P., Chen, H., Qi, X., Heng, P.A., Guo, Y.B., Wang, L.Y., Matuszewski, B.J., Bruni, E., Sanchez, U., et al.: Gland segmentation in colon histology images: the glas challenge contest. arXiv:1603.00275 (2016) Sirinukunwattana, K., Pluim, J.P., Chen, H., Qi, X., Heng, P.A., Guo, Y.B., Wang, L.Y., Matuszewski, B.J., Bruni, E., Sanchez, U., et al.: Gland segmentation in colon histology images: the glas challenge contest. arXiv:​1603.​00275 (2016)
12.
go back to reference Sirinukunwattana, K., Snead, D.R., Rajpoot, N.M.: A stochastic polygons model for glandular structures in colon histology images. TMI 34(11), 2366–2378 (2015) Sirinukunwattana, K., Snead, D.R., Rajpoot, N.M.: A stochastic polygons model for glandular structures in colon histology images. TMI 34(11), 2366–2378 (2015)
13.
go back to reference Szegedy, C., Liu, W., Jia, Y., Sermanet, P., Reed, S., Anguelov, D., Erhan, D., Vanhoucke, V., Rabinovich, A.: Going deeper with convolutions. In: CVPR (2015) Szegedy, C., Liu, W., Jia, Y., Sermanet, P., Reed, S., Anguelov, D., Erhan, D., Vanhoucke, V., Rabinovich, A.: Going deeper with convolutions. In: CVPR (2015)
14.
go back to reference Xie, S., Tu, Z.: Holistically-nested edge detection. In: ICCV (2015) Xie, S., Tu, Z.: Holistically-nested edge detection. In: ICCV (2015)
15.
go back to reference Zheng, S., Jayasumana, S., Romera-Paredes, B., Vineet, V., Su, Z., Du, D., Huang, C., Torr, P.H.: Conditional random fields as recurrent neural networks. In: CVPR (2015) Zheng, S., Jayasumana, S., Romera-Paredes, B., Vineet, V., Su, Z., Du, D., Huang, C., Torr, P.H.: Conditional random fields as recurrent neural networks. In: CVPR (2015)
Metadata
Title
Gland Instance Segmentation by Deep Multichannel Side Supervision
Authors
Yan Xu
Yang Li
Mingyuan Liu
Yipei Wang
Maode Lai
Eric I-Chao Chang
Copyright Year
2016
DOI
https://doi.org/10.1007/978-3-319-46723-8_57

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