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2017 | OriginalPaper | Chapter

Hierarchical Region-Network Sparsity for High-Dimensional Inference in Brain Imaging

Authors : Danilo Bzdok, Michael Eickenberg, Gaël Varoquaux, Bertrand Thirion

Published in: Information Processing in Medical Imaging

Publisher: Springer International Publishing

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Abstract

Structured sparsity penalization has recently improved statistical models applied to high-dimensional data in various domains. As an extension to medical imaging, the present work incorporates priors on network hierarchies of brain regions into logistic-regression to distinguish neural activity effects. These priors bridge two separately studied levels of brain architecture: functional segregation into regions and functional integration by networks. Hierarchical region-network priors are shown to better classify and recover 18 psychological tasks than other sparse estimators. Varying the relative importance of region and network structure within the hierarchical tree penalty captured complementary aspects of the neural activity patterns. Local and global priors of neurobiological knowledge are thus demonstrated to offer advantages in generalization performance, sample complexity, and domain interpretability.

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Literature
1.
go back to reference Abraham, A., Pedregosa, F., Eickenberg, M., Gervais, P., Mueller, A., Kossaifi, J., Gramfort, A., Thirion, B., Varoquaux, G.: Machine learning for neuroimaging with scikit-learn. Front. Neuroinform. 8, 14 (2014)CrossRef Abraham, A., Pedregosa, F., Eickenberg, M., Gervais, P., Mueller, A., Kossaifi, J., Gramfort, A., Thirion, B., Varoquaux, G.: Machine learning for neuroimaging with scikit-learn. Front. Neuroinform. 8, 14 (2014)CrossRef
2.
go back to reference Anderson, M.L., Kinnison, J., Pessoa, L.: Describing functional diversity of brain regions and brain networks. Neuroimage 73, 50–58 (2013)CrossRef Anderson, M.L., Kinnison, J., Pessoa, L.: Describing functional diversity of brain regions and brain networks. Neuroimage 73, 50–58 (2013)CrossRef
3.
go back to reference Bach, F., Jenatton, R., Mairal, J., Obozinski, G.: Optimization with sparsity-inducing penalties. Found. Trends Mach. Learn. 4(1), 1–106 (2012)CrossRefMATH Bach, F., Jenatton, R., Mairal, J., Obozinski, G.: Optimization with sparsity-inducing penalties. Found. Trends Mach. Learn. 4(1), 1–106 (2012)CrossRefMATH
4.
go back to reference Barch, D.M., Burgess, G.C., Harms, M.P., Petersen, S.E., Schlaggar, F.C.: Function in the human connectome: task-FMRI and individual differences in behavior. Neuroimage 80, 169–189 (2013)CrossRef Barch, D.M., Burgess, G.C., Harms, M.P., Petersen, S.E., Schlaggar, F.C.: Function in the human connectome: task-FMRI and individual differences in behavior. Neuroimage 80, 169–189 (2013)CrossRef
5.
go back to reference Beck, A., Teboulle, M.: A fast iterative shrinkage-thresholding algorithm for linear inverse problems. SIAM J. Imaging Sci. 2(1), 183–202 (2009)MathSciNetCrossRefMATH Beck, A., Teboulle, M.: A fast iterative shrinkage-thresholding algorithm for linear inverse problems. SIAM J. Imaging Sci. 2(1), 183–202 (2009)MathSciNetCrossRefMATH
6.
go back to reference Beckmann, C.F., DeLuca, M., Devlin, J.T., Smith, S.M.: Investigations into resting-state connectivity using independent component analysis. Philos. Trans. R. Soc. Lond. B Biol. Sci. 360(1457), 1001–1013 (2005)CrossRef Beckmann, C.F., DeLuca, M., Devlin, J.T., Smith, S.M.: Investigations into resting-state connectivity using independent component analysis. Philos. Trans. R. Soc. Lond. B Biol. Sci. 360(1457), 1001–1013 (2005)CrossRef
7.
go back to reference Bzdok, D., Eickenberg, M., Grisel, O., Thirion, B., Varoquaux, G.: Semi-supervised factored logistic regression for high-dimensional neuroimaging data. In: Advances in Neural Information Processing Systems, pp. 3330–3338 (2015) Bzdok, D., Eickenberg, M., Grisel, O., Thirion, B., Varoquaux, G.: Semi-supervised factored logistic regression for high-dimensional neuroimaging data. In: Advances in Neural Information Processing Systems, pp. 3330–3338 (2015)
8.
go back to reference Craddock, R.C., James, G.A., Holtzheimer, P.E., Hu, X.P., Mayberg, H.S.: A whole brain FMRI atlas generated via spatially constrained spectral clustering. Hum. Brain Mapp. 33(8), 1914–19289 (2012)CrossRef Craddock, R.C., James, G.A., Holtzheimer, P.E., Hu, X.P., Mayberg, H.S.: A whole brain FMRI atlas generated via spatially constrained spectral clustering. Hum. Brain Mapp. 33(8), 1914–19289 (2012)CrossRef
9.
go back to reference Doria, V., Beckmann, C.F., Arichia, T., Merchanta, N., Groppoa, M., Turkheimerb, F.E., Counsella, S.J., Murgasovad, M., Aljabard, P., Nunesa, R.G., Larkmana, D.J., Reese, G., Edwards, A.D.: Emergence of resting state networks in the preterm human brain. Proc. Natl. Acad. Sci. USA 107(46), 20015–20020 (2010)CrossRef Doria, V., Beckmann, C.F., Arichia, T., Merchanta, N., Groppoa, M., Turkheimerb, F.E., Counsella, S.J., Murgasovad, M., Aljabard, P., Nunesa, R.G., Larkmana, D.J., Reese, G., Edwards, A.D.: Emergence of resting state networks in the preterm human brain. Proc. Natl. Acad. Sci. USA 107(46), 20015–20020 (2010)CrossRef
10.
go back to reference Harchaoui, Z., Douze, M., Paulin, M., Dudik, M., Malick, J.: Large-scale image classification with trace-norm regularization. In: 2012 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), pp. 3386–3393. IEEE (2012) Harchaoui, Z., Douze, M., Paulin, M., Dudik, M., Malick, J.: Large-scale image classification with trace-norm regularization. In: 2012 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), pp. 3386–3393. IEEE (2012)
11.
go back to reference Iaria, G., Fox, C.J., Waite, C.T., Aharon, I., Barton, J.J.: The contribution of the fusiform gyrus and superior temporal sulcus in processing facial attractiveness: neuropsychological and neuroimaging evidence. Neuroscience 155(2), 409–422 (2008)CrossRef Iaria, G., Fox, C.J., Waite, C.T., Aharon, I., Barton, J.J.: The contribution of the fusiform gyrus and superior temporal sulcus in processing facial attractiveness: neuropsychological and neuroimaging evidence. Neuroscience 155(2), 409–422 (2008)CrossRef
12.
go back to reference Jenatton, R., Gramfort, A., Michel, V., Obozinski, G., Bach, F., Thirion, B.: Multi-scale mining of FMRI data with hierarchical structured sparsity. SIAM J. Imaging Sci. 5(3), 835–856 (2012)MathSciNetCrossRefMATH Jenatton, R., Gramfort, A., Michel, V., Obozinski, G., Bach, F., Thirion, B.: Multi-scale mining of FMRI data with hierarchical structured sparsity. SIAM J. Imaging Sci. 5(3), 835–856 (2012)MathSciNetCrossRefMATH
13.
14.
go back to reference Kanwisher, N.: Functional specificity in the human brain: a window into the functional architecture of the mind. Proc. Natl. Acad. Sci. USA 107(25), 11163–11170 (2010)CrossRef Kanwisher, N.: Functional specificity in the human brain: a window into the functional architecture of the mind. Proc. Natl. Acad. Sci. USA 107(25), 11163–11170 (2010)CrossRef
15.
go back to reference Passingham, R.E., Stephan, K.E., Kotter, R.: The anatomical basis of functional localization in the cortex. Nat. Rev. Neurosci. 3(8), 606–616 (2002)CrossRef Passingham, R.E., Stephan, K.E., Kotter, R.: The anatomical basis of functional localization in the cortex. Nat. Rev. Neurosci. 3(8), 606–616 (2002)CrossRef
16.
go back to reference Pedregosa, F., Varoquaux, G., Gramfort, A., et al.: Scikit-learn: machine learning in python. J. Mach. Learn. Res. 12, 2825–2830 (2011)MathSciNetMATH Pedregosa, F., Varoquaux, G., Gramfort, A., et al.: Scikit-learn: machine learning in python. J. Mach. Learn. Res. 12, 2825–2830 (2011)MathSciNetMATH
17.
go back to reference Sepulcre, J., Liu, H., Talukdar, T., Martincorena, I., Yeo, B.T.T., Buckner, R.L.: The organization of local and distant functional connectivity in the human brain. PLoS Comput. Biol. 6(6), e1000808 (2010)MathSciNetCrossRef Sepulcre, J., Liu, H., Talukdar, T., Martincorena, I., Yeo, B.T.T., Buckner, R.L.: The organization of local and distant functional connectivity in the human brain. PLoS Comput. Biol. 6(6), e1000808 (2010)MathSciNetCrossRef
18.
go back to reference Smith, S.M., Fox, P.T., Miller, K.L., Glahn, D.C., Fox, P.M., Mackay, C.E., Filippini, N., Beckmann, C.F.: Correspondence of the brain’s functional architecture during activation and rest. Proc. Natl. Acad. Sci. USA 106(31), 13040–13045 (2009)CrossRef Smith, S.M., Fox, P.T., Miller, K.L., Glahn, D.C., Fox, P.M., Mackay, C.E., Filippini, N., Beckmann, C.F.: Correspondence of the brain’s functional architecture during activation and rest. Proc. Natl. Acad. Sci. USA 106(31), 13040–13045 (2009)CrossRef
19.
go back to reference Sporns, O.: Contributions and challenges for network models in cognitive neuroscience. Nat. Neurosci. 17(5), 652–660 (2014)CrossRef Sporns, O.: Contributions and challenges for network models in cognitive neuroscience. Nat. Neurosci. 17(5), 652–660 (2014)CrossRef
20.
go back to reference Varoquaux, G., Gramfort, A., Thirion, B.: Small-sample brain mapping: sparse recovery on spatially correlated designs with randomization and clustering. arXiv preprint. arXiv:1206.6447 (2012) Varoquaux, G., Gramfort, A., Thirion, B.: Small-sample brain mapping: sparse recovery on spatially correlated designs with randomization and clustering. arXiv preprint. arXiv:​1206.​6447 (2012)
21.
go back to reference Yuan, M., Lin, Y.: Model selection and estimation in regression with grouped variables. Philos. Trans. R. Soc. Lond. B Biol. Sci. 68(1), 49–67 (2006)MathSciNetMATH Yuan, M., Lin, Y.: Model selection and estimation in regression with grouped variables. Philos. Trans. R. Soc. Lond. B Biol. Sci. 68(1), 49–67 (2006)MathSciNetMATH
22.
go back to reference Zeki, S.M.: Functional specialisation in the visual cortex of the rhesus monkey. Nature 274(5670), 423–428 (1978)CrossRef Zeki, S.M.: Functional specialisation in the visual cortex of the rhesus monkey. Nature 274(5670), 423–428 (1978)CrossRef
Metadata
Title
Hierarchical Region-Network Sparsity for High-Dimensional Inference in Brain Imaging
Authors
Danilo Bzdok
Michael Eickenberg
Gaël Varoquaux
Bertrand Thirion
Copyright Year
2017
DOI
https://doi.org/10.1007/978-3-319-59050-9_26

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