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2020 | OriginalPaper | Chapter

Hybrid Deep Learning Gaussian Process for Diabetic Retinopathy Diagnosis and Uncertainty Quantification

Authors : Santiago Toledo-Cortés, Melissa de la Pava, Oscar Perdomo, Fabio A. González

Published in: Ophthalmic Medical Image Analysis

Publisher: Springer International Publishing

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Abstract

Diabetic Retinopathy (DR) is one of the microvascular complications of Diabetes Mellitus, which remains as one of the leading causes of blindness worldwide. Computational models based on Convolutional Neural Networks represent the state of the art for the automatic detection of DR using eye fundus images. Most of the current work address this problem as a binary classification task. However, including the grade estimation and quantification of predictions uncertainty can potentially increase the robustness of the model. In this paper, a hybrid Deep Learning-Gaussian process method for DR diagnosis and uncertainty quantification is presented. This method combines the representational power of deep learning, with the ability to generalize from small datasets of Gaussian process models. The results show that uncertainty quantification in the predictions improves the interpretability of the method as a diagnostic support tool. The source code to replicate the experiments is publicly available at https://​github.​com/​stoledoc/​DLGP-DR-Diagnosis.

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Literature
2.
go back to reference American Academy of Ophthalmology: International clinical diabetic retinopathy disease severity scale detailed table. International Council of Ophthalmology (2002) American Academy of Ophthalmology: International clinical diabetic retinopathy disease severity scale detailed table. International Council of Ophthalmology (2002)
3.
go back to reference Bradshaw, J., Matthews, A.G.d.G., Ghahramani, Z.: Adversarial examples, uncertainty, and transfer testing robustness in Gaussian process hybrid deep networks, eprint, pp. 1-33 (2017). arXiv:1707.02476v1 Bradshaw, J., Matthews, A.G.d.G., Ghahramani, Z.: Adversarial examples, uncertainty, and transfer testing robustness in Gaussian process hybrid deep networks, eprint, pp. 1-33 (2017). arXiv:​1707.​02476v1
6.
go back to reference Ethem, A.: Introduction to Machine Learning, 3rd edn. The MIT Press, Cambridge (2014)MATH Ethem, A.: Introduction to Machine Learning, 3rd edn. The MIT Press, Cambridge (2014)MATH
7.
go back to reference Gargeya, R., Leng, T.: Automated identification of diabetic retinopathy using deep learning. Ophthalmology 124(7), 962–969 (2017)CrossRef Gargeya, R., Leng, T.: Automated identification of diabetic retinopathy using deep learning. Ophthalmology 124(7), 962–969 (2017)CrossRef
8.
go back to reference Gulshan, V., et al.: Development and validation of a deep learning algorithm for detection of diabetic retinopathy in retinal fundus photographs. JAMA J. Am. Med. Assoc. 316(22), 2402–2410 (2016)CrossRef Gulshan, V., et al.: Development and validation of a deep learning algorithm for detection of diabetic retinopathy in retinal fundus photographs. JAMA J. Am. Med. Assoc. 316(22), 2402–2410 (2016)CrossRef
11.
go back to reference Leibig, C., Allken, V., Ayhan, M.S., Berens, P., Wahl, S.: Leveraging uncertainty information from deep neural networks for disease detection. Sci. Rep. 7(1), 1–14 (2017)CrossRef Leibig, C., Allken, V., Ayhan, M.S., Berens, P., Wahl, S.: Leveraging uncertainty information from deep neural networks for disease detection. Sci. Rep. 7(1), 1–14 (2017)CrossRef
13.
go back to reference Lim, Z.W., Lee, M.L., Hsu, W., Wong, T.Y.: Building trust in deep learning system towards automated disease detection. In: The Thirty-First AAAI Conference on Innovative Applications of Artificial Intelligence, pp. 9516–9521 (2018) Lim, Z.W., Lee, M.L., Hsu, W., Wong, T.Y.: Building trust in deep learning system towards automated disease detection. In: The Thirty-First AAAI Conference on Innovative Applications of Artificial Intelligence, pp. 9516–9521 (2018)
14.
go back to reference Perdomo, O., Gonzalez, F.: A systematic review of deep learning methods applied to ocular images. Ciencia e Ingenieria Neogranadina 30(1), 9–26 (2019)CrossRef Perdomo, O., Gonzalez, F.: A systematic review of deep learning methods applied to ocular images. Ciencia e Ingenieria Neogranadina 30(1), 9–26 (2019)CrossRef
15.
go back to reference Raghu, M., Blumer, K., Sayres, R., Obermeyer, Z., Kleinberg, R., Mullainathan, S., Kleinberg, J.: Direct uncertainty prediction for medical second opinions. In: Proceedings of the 36th International Conference on Machine Learning, PMLR 97, Long Beach, California (2019) Raghu, M., Blumer, K., Sayres, R., Obermeyer, Z., Kleinberg, R., Mullainathan, S., Kleinberg, J.: Direct uncertainty prediction for medical second opinions. In: Proceedings of the 36th International Conference on Machine Learning, PMLR 97, Long Beach, California (2019)
16.
go back to reference Szegedy, C., Vanhoucke, V., Ioffe, S., Shlens, J., Wojna, Z.: Rethinking the inception architecture for computer vision. In: Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, December 2016, pp. 2818–2826 (2016). https://doi.org/10.1109/CVPR.2016.308 Szegedy, C., Vanhoucke, V., Ioffe, S., Shlens, J., Wojna, Z.: Rethinking the inception architecture for computer vision. In: Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, December 2016, pp. 2818–2826 (2016). https://​doi.​org/​10.​1109/​CVPR.​2016.​308
17.
go back to reference Voets, M., Møllersen, K., Bongo, L.A.: Reproduction study using public data of: Development and validation of a deep learning algorithm for detection of diabetic retinopathy in retinal fundus photographs. PLoS ONE 14(6), 1–11 (2019)CrossRef Voets, M., Møllersen, K., Bongo, L.A.: Reproduction study using public data of: Development and validation of a deep learning algorithm for detection of diabetic retinopathy in retinal fundus photographs. PLoS ONE 14(6), 1–11 (2019)CrossRef
18.
go back to reference Wells, J.A., et al.: aflibercept, bevacizumab, or ranibizumab for diabetic macular edema two-year results from a comparative effectiveness randomized clinical trial. Ophthalmology 123(6), 1351–1359 (2016)CrossRef Wells, J.A., et al.: aflibercept, bevacizumab, or ranibizumab for diabetic macular edema two-year results from a comparative effectiveness randomized clinical trial. Ophthalmology 123(6), 1351–1359 (2016)CrossRef
19.
go back to reference Wilkinson, C.P.P., et al.: Proposed international clinical diabetic retinopathy and diabetic macular edema disease severity scales. Ophthalmology 110(9), 1677–1682 (2003)CrossRef Wilkinson, C.P.P., et al.: Proposed international clinical diabetic retinopathy and diabetic macular edema disease severity scales. Ophthalmology 110(9), 1677–1682 (2003)CrossRef
20.
go back to reference Wilson, A., Nickisch, H.: Kernel interpolation for scalable structured gaussian processes (KISS-GP). In: Proceedings of the 32nd International Conference on Machine Learning. JMLR: W&CP, Lille, France (2015) Wilson, A., Nickisch, H.: Kernel interpolation for scalable structured gaussian processes (KISS-GP). In: Proceedings of the 32nd International Conference on Machine Learning. JMLR: W&CP, Lille, France (2015)
21.
go back to reference Xin, Q., Elliot, M., Miikkulainen, R.: Quantifying point-prediction uncertainty in neural networks via residual estimation with an I/O Kernel. In: ICLR 2020, Addis Ababa, Ethiopia, pp. 1–17 (2019) Xin, Q., Elliot, M., Miikkulainen, R.: Quantifying point-prediction uncertainty in neural networks via residual estimation with an I/O Kernel. In: ICLR 2020, Addis Ababa, Ethiopia, pp. 1–17 (2019)
22.
go back to reference Yau, J.W., et al.: Global prevalence and major risk factors of diabetic retinopathy. Diabetes Care 35(3), 556–564 (2012)CrossRef Yau, J.W., et al.: Global prevalence and major risk factors of diabetic retinopathy. Diabetes Care 35(3), 556–564 (2012)CrossRef
23.
go back to reference Zeng, X., Chen, H., Luo, Y., Ye, W.: Automated diabetic retinopathy detection based on binocular Siamese-like convolutional neural network. IEEE Access 7(c), 30744–30753 (2019) Zeng, X., Chen, H., Luo, Y., Ye, W.: Automated diabetic retinopathy detection based on binocular Siamese-like convolutional neural network. IEEE Access 7(c), 30744–30753 (2019)
Metadata
Title
Hybrid Deep Learning Gaussian Process for Diabetic Retinopathy Diagnosis and Uncertainty Quantification
Authors
Santiago Toledo-Cortés
Melissa de la Pava
Oscar Perdomo
Fabio A. González
Copyright Year
2020
DOI
https://doi.org/10.1007/978-3-030-63419-3_21

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