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2019 | OriginalPaper | Chapter

Identification of Serious Illness Conversations in Unstructured Clinical Notes Using Deep Neural Networks

Authors : Isabel Chien, Alvin Shi, Alex Chan, Charlotta Lindvall

Published in: Artificial Intelligence in Health

Publisher: Springer International Publishing

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Abstract

Advance care planning, which includes clarifying and documenting goals of care and preferences for future care, is essential for achieving end-of-life care that is consistent with the preferences of dying patients and their families. Physicians document their communication about these preferences as unstructured free text in clinical notes; as a result, routine assessment of this quality indicator is time consuming and costly. In this study, we trained and validated a deep neural network to detect documentation of advanced care planning conversations in clinical notes from electronic health records. We assessed its performance against rigorous manual chart review and rule-based regular expressions. For detecting documentation of patient care preferences at the note level, the algorithm had high performance; F1-score of 92.0 (95% CI, 89.1–95.1), sensitivity of 93.5% (95% CI, 90.0%–98.0%), positive predictive value of 90.5% (95% CI, 86.4%–95.1%) and specificity of 91.0% (95% CI, 86.4%–95.3%) and consistently outperformed regular expression. Deep learning methods offer an efficient and scalable way to improve the visibility of documented serious illness conversations within electronic health record data, helping to better quality of care.

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Appendix
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Literature
1.
go back to reference Cook, D., Rocker, G.: Dying with dignity in the intensive care unit. New Engl. J. Med. 370, 2506–2514 (2014)CrossRef Cook, D., Rocker, G.: Dying with dignity in the intensive care unit. New Engl. J. Med. 370, 2506–2514 (2014)CrossRef
2.
go back to reference Wright, A.A., Zhang, B., Ray, A., et al.: Associations between end-of-life discussions, patient mental health, medical care near death, and caregiver bereavement adjustment. JAMA 300(14), 1665–1673 (2008)CrossRef Wright, A.A., Zhang, B., Ray, A., et al.: Associations between end-of-life discussions, patient mental health, medical care near death, and caregiver bereavement adjustment. JAMA 300(14), 1665–1673 (2008)CrossRef
3.
go back to reference Nicholas, L.H., Langa, K.M., Iwashyna, T.J., Weir, D.R.: Regional variation in the association between advance directives and end-of-life Medicare expenditures. JAMA 306(13), 1447–1453 (2011)CrossRef Nicholas, L.H., Langa, K.M., Iwashyna, T.J., Weir, D.R.: Regional variation in the association between advance directives and end-of-life Medicare expenditures. JAMA 306(13), 1447–1453 (2011)CrossRef
4.
go back to reference Teno, J.M., Gruneir, A., Schwartz, Z., Nanda, A., Wetle, T.: Association between advance directives and quality of end-of-life care: a national study. J. Am. Geriatr. Soc. 55(2), 189–194 (2007)CrossRef Teno, J.M., Gruneir, A., Schwartz, Z., Nanda, A., Wetle, T.: Association between advance directives and quality of end-of-life care: a national study. J. Am. Geriatr. Soc. 55(2), 189–194 (2007)CrossRef
5.
go back to reference Detering, K.M., Hancock, A.D., Reade, M.C., Silvester, W.: The impact of advance care planning on end of life care in elderly patients: randomised controlled trial. BMJ 340, c1345 (2010)CrossRef Detering, K.M., Hancock, A.D., Reade, M.C., Silvester, W.: The impact of advance care planning on end of life care in elderly patients: randomised controlled trial. BMJ 340, c1345 (2010)CrossRef
7.
go back to reference Huynh, T.N., et al.: The frequency and cost of treatment perceived to be futile in critical care. JAMA Intern. Med. 173, 1887–1994 (2013)CrossRef Huynh, T.N., et al.: The frequency and cost of treatment perceived to be futile in critical care. JAMA Intern. Med. 173, 1887–1994 (2013)CrossRef
8.
go back to reference NQF #1626: Patients Admitted to ICU Who Have Care Preferences Documented. National Quality Forum NQF #1626: Patients Admitted to ICU Who Have Care Preferences Documented. National Quality Forum
10.
go back to reference Rising, J., Corrigan, J., Valuck, T.: Building Additional Serious Illness Measures Into Medicare Programs. The Pew Charitable Trusts, Philadelphia (2017) Rising, J., Corrigan, J., Valuck, T.: Building Additional Serious Illness Measures Into Medicare Programs. The Pew Charitable Trusts, Philadelphia (2017)
11.
go back to reference Walling, A.M., Tisnado, D., Asch, S.M., et al.: The quality of supportive cancer care in the veterans affairs health system and targets for improvement. JAMA Intern. Med. 173(22), 2071–2079 (2013)CrossRef Walling, A.M., Tisnado, D., Asch, S.M., et al.: The quality of supportive cancer care in the veterans affairs health system and targets for improvement. JAMA Intern. Med. 173(22), 2071–2079 (2013)CrossRef
12.
go back to reference Dy, S.M., Lorenz, K.A., O’Neill, S.M., et al.: Cancer quality-ASSIST supportive oncology quality indicator set: feasibility, reliability, and validity testing. Cancer 116(13), 3267–3275 (2010)CrossRef Dy, S.M., Lorenz, K.A., O’Neill, S.M., et al.: Cancer quality-ASSIST supportive oncology quality indicator set: feasibility, reliability, and validity testing. Cancer 116(13), 3267–3275 (2010)CrossRef
13.
go back to reference Aldridge, M.D., Meier, D.E.: It is possible: quality measurement during serious illness. JAMA Intern. Med. 173(22), 2080–2081 (2013)CrossRef Aldridge, M.D., Meier, D.E.: It is possible: quality measurement during serious illness. JAMA Intern. Med. 173(22), 2080–2081 (2013)CrossRef
14.
go back to reference Melton, G.B., Hripcsak, G.: Automated detection of adverse events using natural language processing of discharge summaries. JAMA 12(4), 448–457 (2005) Melton, G.B., Hripcsak, G.: Automated detection of adverse events using natural language processing of discharge summaries. JAMA 12(4), 448–457 (2005)
15.
go back to reference Honnibal, M., Johnson, M.: An improved non-monotonic transition system for dependency parsing. In: Proceedings of the 2015 Conference on Empirical Methods in Natural Language Processing, September 2015, Lisbon, Portugal, pp. 1373–1378. Association for Computational Linguistics (2015) Honnibal, M., Johnson, M.: An improved non-monotonic transition system for dependency parsing. In: Proceedings of the 2015 Conference on Empirical Methods in Natural Language Processing, September 2015, Lisbon, Portugal, pp. 1373–1378. Association for Computational Linguistics (2015)
16.
go back to reference Carrell, D.S., et al.: Challenges in adapting existing clinical natural language processing systems to multiple, diverse healthcare settings. (JAMIA) 2, 986–991 (2017) Carrell, D.S., et al.: Challenges in adapting existing clinical natural language processing systems to multiple, diverse healthcare settings. (JAMIA) 2, 986–991 (2017)
18.
go back to reference Johnson, A.E., et al.: MIMIC-III, a freely accessible critical care database. Sci. Data 3, 160035 (2016)CrossRef Johnson, A.E., et al.: MIMIC-III, a freely accessible critical care database. Sci. Data 3, 160035 (2016)CrossRef
19.
go back to reference Walling, A.M., et al.: The quality of care provided to hospitalized patients at the end of life. Arch. Intern. Med. 170(12), 1057–1063 (2010)CrossRef Walling, A.M., et al.: The quality of care provided to hospitalized patients at the end of life. Arch. Intern. Med. 170(12), 1057–1063 (2010)CrossRef
20.
go back to reference Honnibal, M., Johnson, M.: An improved non-monotonic transition system for dependency parsing. In: Proceedings of the 2015 Conference on Empirical Methods in Natural Language Processing, Lisbon, Portugal (2015) Honnibal, M., Johnson, M.: An improved non-monotonic transition system for dependency parsing. In: Proceedings of the 2015 Conference on Empirical Methods in Natural Language Processing, Lisbon, Portugal (2015)
21.
go back to reference Dernoncourt, F., Lee, J.Y., Uzuner, O., Szolovits, P.: De-identification of patient notes with recurrent neural networks. J. Am. Med. Inform. Assoc. 24(3), 596–606 (2017) Dernoncourt, F., Lee, J.Y., Uzuner, O., Szolovits, P.: De-identification of patient notes with recurrent neural networks. J. Am. Med. Inform. Assoc. 24(3), 596–606 (2017)
22.
go back to reference Dernoncourt, F., Lee, J.Y., Szolovits, P.: NeuroNER: an easy-to-use program for named-entity recognition based on neural networks. In: Conference on Empirical Methods on Natural Language Processing (EMNLP) (2017) Dernoncourt, F., Lee, J.Y., Szolovits, P.: NeuroNER: an easy-to-use program for named-entity recognition based on neural networks. In: Conference on Empirical Methods on Natural Language Processing (EMNLP) (2017)
24.
go back to reference Davison, A.C., Hinkley, D.V.: Bootstrap Methods and their Application. Cambridge University Press, Cambridge (1997)CrossRef Davison, A.C., Hinkley, D.V.: Bootstrap Methods and their Application. Cambridge University Press, Cambridge (1997)CrossRef
25.
go back to reference D’Avolio, L.W., Nguyen, T.M., Goryachev, S., Fiore, L.D.: Automated concept-level information extraction to reduce the need for custom software and rules development. J. Am. Med. Inform. Assoc. 18(5), 607–613 (2011)CrossRef D’Avolio, L.W., Nguyen, T.M., Goryachev, S., Fiore, L.D.: Automated concept-level information extraction to reduce the need for custom software and rules development. J. Am. Med. Inform. Assoc. 18(5), 607–613 (2011)CrossRef
26.
go back to reference Xu, H., et al.: Facilitating pharmacogenetic studies using electronic health records and natural-language processing: a case study of warfarin. J. Am. Med. Inform. Assoc. 18(4), 387–391 (2011)CrossRef Xu, H., et al.: Facilitating pharmacogenetic studies using electronic health records and natural-language processing: a case study of warfarin. J. Am. Med. Inform. Assoc. 18(4), 387–391 (2011)CrossRef
27.
go back to reference Bejnordi, B.E., Veta, M., van Diest, P.J., et al.: Diagnostic assessment of deep learning algorithms for detection of lymph node metastases in women with breast cancer. J. Am. Med. Inform. Assoc. 318(22), 2199–2210 (2017)CrossRef Bejnordi, B.E., Veta, M., van Diest, P.J., et al.: Diagnostic assessment of deep learning algorithms for detection of lymph node metastases in women with breast cancer. J. Am. Med. Inform. Assoc. 318(22), 2199–2210 (2017)CrossRef
28.
go back to reference Gulshan, V., Peng, L., Coram, M., et al.: Development and validation of a deep learning algorithm for detection of diabetic retinopathy in retinal fundus photographs. J. Am. Med. Inform. Assoc. 316(22), 2402–2410 (2016)CrossRef Gulshan, V., Peng, L., Coram, M., et al.: Development and validation of a deep learning algorithm for detection of diabetic retinopathy in retinal fundus photographs. J. Am. Med. Inform. Assoc. 316(22), 2402–2410 (2016)CrossRef
29.
go back to reference Ting, D.S.W., et al.: Development and validation of a deep learning system for diabetic retinopathy and related eye diseases using retinal images from multiethnic populations with diabetes. J. Am. Med. Inform. Assoc. 318, 2211–2223 (2017)CrossRef Ting, D.S.W., et al.: Development and validation of a deep learning system for diabetic retinopathy and related eye diseases using retinal images from multiethnic populations with diabetes. J. Am. Med. Inform. Assoc. 318, 2211–2223 (2017)CrossRef
Metadata
Title
Identification of Serious Illness Conversations in Unstructured Clinical Notes Using Deep Neural Networks
Authors
Isabel Chien
Alvin Shi
Alex Chan
Charlotta Lindvall
Copyright Year
2019
DOI
https://doi.org/10.1007/978-3-030-12738-1_15

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