Skip to main content
Top

2018 | OriginalPaper | Chapter

Learning from Noisy Label Statistics: Detecting High Grade Prostate Cancer in Ultrasound Guided Biopsy

Authors : Shekoofeh Azizi, Pingkun Yan, Amir Tahmasebi, Peter Pinto, Bradford Wood, Jin Tae Kwak, Sheng Xu, Baris Turkbey, Peter Choyke, Parvin Mousavi, Purang Abolmaesumi

Published in: Medical Image Computing and Computer Assisted Intervention – MICCAI 2018

Publisher: Springer International Publishing

Activate our intelligent search to find suitable subject content or patents.

search-config
loading …

Abstract

The ubiquity of noise is an important issue for building computer-aided diagnosis models for prostate cancer biopsy guidance where the histopathology data is sparse and not finely annotated. We propose a solution to alleviate this challenge as a part of Temporal Enhanced Ultrasound (TeUS)-based prostate cancer biopsy guidance method. Specifically, we embed the prior knowledge from the histopathology as the soft labels in a two-stage model, to leverage the problem of diverse label noise in the ground-truth. We then use this information to accurately detect the grade of cancer and also to estimate the length of cancer in the target. Additionally, we create a Bayesian probabilistic version of our network, which allows evaluation of model uncertainty that can lead to any possible misguidance during the biopsy procedure. In an in vivo study with 155 patients, we analyze data from 250 suspicious cancer foci obtained during fusion biopsy. We achieve the average area under the curve of 0.84 for cancer grading and mean squared error of 0.12 in the estimation of tumor in biopsy core length.

Dont have a licence yet? Then find out more about our products and how to get one now:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literature
1.
go back to reference Ahmed, H.U., et al.: Diagnostic accuracy of multi-parametric MRI and TRUS biopsy in prostate cancer (PROMIS). Lancet 389(10071), 815–822 (2017)CrossRef Ahmed, H.U., et al.: Diagnostic accuracy of multi-parametric MRI and TRUS biopsy in prostate cancer (PROMIS). Lancet 389(10071), 815–822 (2017)CrossRef
2.
go back to reference Azizi, S., Bayat, S., Abolmaesumi, P., Mousavi, P., et al.: Detection and grading of prostate cancer using temporal enhanced ultrasound: combining deep neural networks and tissue mimicking simulations. IJCARS 12(8), 1293–1305 (2017) Azizi, S., Bayat, S., Abolmaesumi, P., Mousavi, P., et al.: Detection and grading of prostate cancer using temporal enhanced ultrasound: combining deep neural networks and tissue mimicking simulations. IJCARS 12(8), 1293–1305 (2017)
6.
go back to reference Bayat, S., Azizi, S., Daoud, M., et al.: Investigation of physical phenomena underlying temporal enhanced ultrasound as a new diagnostic imaging technique: theory and simulations. IEEE Trans. UFFC 65(3), 400–410 (2017)CrossRef Bayat, S., Azizi, S., Daoud, M., et al.: Investigation of physical phenomena underlying temporal enhanced ultrasound as a new diagnostic imaging technique: theory and simulations. IEEE Trans. UFFC 65(3), 400–410 (2017)CrossRef
8.
go back to reference Frénay, B., Verleysen, M.: Classification in the presence of label noise. IEEE Trans. Neural Netw. Learn. Syst. 25(5), 845–869 (2014)CrossRef Frénay, B., Verleysen, M.: Classification in the presence of label noise. IEEE Trans. Neural Netw. Learn. Syst. 25(5), 845–869 (2014)CrossRef
9.
go back to reference Gal, Y., Ghahramani, Z.: Dropout as a Bayesian approximation: representing model uncertainty in deep learning. In: Machine Learning, pp. 1050–1059 (2016) Gal, Y., Ghahramani, Z.: Dropout as a Bayesian approximation: representing model uncertainty in deep learning. In: Machine Learning, pp. 1050–1059 (2016)
10.
go back to reference Kasivisvanathan, V.: Prostate evaluation for clinically important disease: Sampling using image-guidance or not? (PRECISION). Eur. Urol. Suppl. 17(2), e1716–e1717 (2018)CrossRef Kasivisvanathan, V.: Prostate evaluation for clinically important disease: Sampling using image-guidance or not? (PRECISION). Eur. Urol. Suppl. 17(2), e1716–e1717 (2018)CrossRef
11.
go back to reference Llobet, R., Pérez-Cortés, J.C., Toselli, A.H.: Computer-aided detection of prostate cancer. Int. J. Med. Inf. 76(7), 547–556 (2007)CrossRef Llobet, R., Pérez-Cortés, J.C., Toselli, A.H.: Computer-aided detection of prostate cancer. Int. J. Med. Inf. 76(7), 547–556 (2007)CrossRef
12.
go back to reference Moradi, M., Abolmaesumi, P., Siemens, D.R., Sauerbrei, E.E., Boag, A.H., Mousavi, P.: Augmenting detection of prostate cancer in transrectal ultrasound images using SVM and RF time series. IEEE TBME 56(9), 2214–2224 (2009) Moradi, M., Abolmaesumi, P., Siemens, D.R., Sauerbrei, E.E., Boag, A.H., Mousavi, P.: Augmenting detection of prostate cancer in transrectal ultrasound images using SVM and RF time series. IEEE TBME 56(9), 2214–2224 (2009)
13.
go back to reference Nelson, E.D., Slotoroff, C.B., Gomella, L.G., Halpern, E.J.: Targeted biopsy of the prostate: the impact of color doppler imaging and elastography on prostate cancer detection and Gleason score. Urology 70(6), 1136–1140 (2007)CrossRef Nelson, E.D., Slotoroff, C.B., Gomella, L.G., Halpern, E.J.: Targeted biopsy of the prostate: the impact of color doppler imaging and elastography on prostate cancer detection and Gleason score. Urology 70(6), 1136–1140 (2007)CrossRef
14.
go back to reference Siddiqui, M.M., et al.: Comparison of MR/US fusion-guided biopsy with US-guided biopsy for the diagnosis of prostate cancer. JAMA 313(4), 390–397 (2015)CrossRef Siddiqui, M.M., et al.: Comparison of MR/US fusion-guided biopsy with US-guided biopsy for the diagnosis of prostate cancer. JAMA 313(4), 390–397 (2015)CrossRef
15.
go back to reference Singer, E.A., Kaushal, A., et al.: Active surveillance for prostate cancer: past, present and future. Curr. Opin. Oncol. 24(3), 243–250 (2012)CrossRef Singer, E.A., Kaushal, A., et al.: Active surveillance for prostate cancer: past, present and future. Curr. Opin. Oncol. 24(3), 243–250 (2012)CrossRef
Metadata
Title
Learning from Noisy Label Statistics: Detecting High Grade Prostate Cancer in Ultrasound Guided Biopsy
Authors
Shekoofeh Azizi
Pingkun Yan
Amir Tahmasebi
Peter Pinto
Bradford Wood
Jin Tae Kwak
Sheng Xu
Baris Turkbey
Peter Choyke
Parvin Mousavi
Purang Abolmaesumi
Copyright Year
2018
DOI
https://doi.org/10.1007/978-3-030-00937-3_3

Premium Partner