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2012 | OriginalPaper | Chapter

Metric Selection and Diffusion Tensor Swelling

Authors : Ofer Pasternak, Nir Sochen, Peter J. Basser

Published in: New Developments in the Visualization and Processing of Tensor Fields

Publisher: Springer Berlin Heidelberg

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Abstract

The measurement of the distance between diffusion tensors is the foundation on which any subsequent analysis or processing of these quantities, such as registration, regularization, interpolation, or statistical inference is based. Euclidean metrics were first used in the context of diffusion tensors; then geometric metrics, having the practical advantage of reducing the “swelling effect,” were proposed instead. In this chapter we explore the physical roots of the swelling effect and relate it to acquisition noise. We find that Johnson noise causes shrinking of tensors, and suggest that in order to account for this shrinking, a metric should support swelling of tensors while averaging or interpolating. This interpretation of the swelling effect leads us to favor the Euclidean metric for diffusion tensor analysis. This is a surprising result considering the recent increase of interest in the geometric metrics.

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Literature
1.
go back to reference Andersson, J.L.: Maximum a posteriori estimation of diffusion tensor parameters using a Rician noise model: why, how and but. NeuroImage 42(4), 1340–1356 (2008) Andersson, J.L.: Maximum a posteriori estimation of diffusion tensor parameters using a Rician noise model: why, how and but. NeuroImage 42(4), 1340–1356 (2008)
2.
go back to reference Arsigny, V., Fillard, P., Pennec, X., Ayache, N.: Log-Euclidean metrics for fast and simple calculus on diffusion tensors. Magn. Reson. Med. 56(2), 411–421 (2006). doi:10.1002/mrm.20965 Arsigny, V., Fillard, P., Pennec, X., Ayache, N.: Log-Euclidean metrics for fast and simple calculus on diffusion tensors. Magn. Reson. Med. 56(2), 411–421 (2006). doi:10.1002/mrm.20965
3.
go back to reference Assaf, Y., Pasternak, O.: Diffusion tensor imaging (DTI)-based white matter mapping in brain research: a review. J. Mol. Neurosci. 34(1), 51–61 (2008) Assaf, Y., Pasternak, O.: Diffusion tensor imaging (DTI)-based white matter mapping in brain research: a review. J. Mol. Neurosci. 34(1), 51–61 (2008)
4.
go back to reference Basser, P.J., Pierpaoli, C.: A simplified method to measure the diffusion tensor from seven MR images. Magn. Reson. Med. 39, 928–934 (1998) Basser, P.J., Pierpaoli, C.: A simplified method to measure the diffusion tensor from seven MR images. Magn. Reson. Med. 39, 928–934 (1998)
5.
go back to reference Basser, P.J., Jones, D.K.: Diffusion-tensor MRI: theory, experimental design and data analysis—a technical review. NMR Biom. 15, 456–467 (2002) Basser, P.J., Jones, D.K.: Diffusion-tensor MRI: theory, experimental design and data analysis—a technical review. NMR Biom. 15, 456–467 (2002)
6.
go back to reference Basser, P.J., Pajevic, S.: A normal distribution for tensor-valued random variables to analyze diffusion tensor MRI data. IEEE TMI 22, 785–794 (2003) Basser, P.J., Pajevic, S.: A normal distribution for tensor-valued random variables to analyze diffusion tensor MRI data. IEEE TMI 22, 785–794 (2003)
7.
go back to reference Basser, P.J., Mattiello, J., LeBihan, D.: MR diffusion tensor spectroscopy and imaging. Biophys. J. 66, 259–267 (1994) Basser, P.J., Mattiello, J., LeBihan, D.: MR diffusion tensor spectroscopy and imaging. Biophys. J. 66, 259–267 (1994)
8.
go back to reference Batchelor, P.G., Moakher, M., Atkinson, D., Calamante, F., Connelly, A.: A rigorous framework for diffusion tensor calculus. Magn. Reson. Med. 53, 221–225 (2005) Batchelor, P.G., Moakher, M., Atkinson, D., Calamante, F., Connelly, A.: A rigorous framework for diffusion tensor calculus. Magn. Reson. Med. 53, 221–225 (2005)
9.
go back to reference Crank, J.: The Mathematics of Diffusion. Oxford University Press, New York, USA (1975) Crank, J.: The Mathematics of Diffusion. Oxford University Press, New York, USA (1975)
10.
go back to reference Einstein, A.: Investigations on the Theory of the Brownian Movement. Dover, New York (1926) Einstein, A.: Investigations on the Theory of the Brownian Movement. Dover, New York (1926)
11.
go back to reference Eisenhart, L.: Differential Geometry. Princeton University Press, Princeton (1940) Eisenhart, L.: Differential Geometry. Princeton University Press, Princeton (1940)
12.
go back to reference Fillard, P., Arsigny, V., Pennec, X., Ayache, N.: Clinical DT-MRI estimation, smoothing and fiber tracking with log-Euclidean metrics. IEEE Trans. Med. Imaging 26(11), 1472–1482 (2007). doi:10.1109/TMI.2007.899173. PMID: 18041263 Fillard, P., Arsigny, V., Pennec, X., Ayache, N.: Clinical DT-MRI estimation, smoothing and fiber tracking with log-Euclidean metrics. IEEE Trans. Med. Imaging 26(11), 1472–1482 (2007). doi:10.1109/TMI.2007.899173. PMID: 18041263
13.
go back to reference Fletcher, P.T., Joshi, S.: Riemannian geometry for the statistical analysis of diffusion tensor data. Signal Process. 87(2), 250–262 (2007) Fletcher, P.T., Joshi, S.: Riemannian geometry for the statistical analysis of diffusion tensor data. Signal Process. 87(2), 250–262 (2007)
14.
go back to reference Gur, Y., Pasternak, O., Sochen, N.: Fast gl(n)-invariant framework for tensors regularization. Int. J. Comput. Vis. 85(3) (2009) Gur, Y., Pasternak, O., Sochen, N.: Fast gl(n)-invariant framework for tensors regularization. Int. J. Comput. Vis. 85(3) (2009)
15.
go back to reference Jian, B., Vemuri, B.C., Ozarslan, E., Carney, P.R., Mareci, T.H.: A novel tensor distribution model for the diffusion-weighted MR signal. NeuroImage 37(1), 164–176 (2007) Jian, B., Vemuri, B.C., Ozarslan, E., Carney, P.R., Mareci, T.H.: A novel tensor distribution model for the diffusion-weighted MR signal. NeuroImage 37(1), 164–176 (2007)
16.
go back to reference Kindlmann, G., Ennis, D.B., Whitaker, R.T., Westin, C.F.: Diffusion tensor analysis with invariant gradients and rotation tangents. IEEE Trans. Med. Imaging 26(11), 1483–1499 (2007). doi:10.1109/TMI.2007.907277 Kindlmann, G., Ennis, D.B., Whitaker, R.T., Westin, C.F.: Diffusion tensor analysis with invariant gradients and rotation tangents. IEEE Trans. Med. Imaging 26(11), 1483–1499 (2007). doi:10.1109/TMI.2007.907277
17.
go back to reference Koay, C.G., Basser, P.J.: Analytically exact correction scheme for signal extraction from noisy magnitude MR signals. J. Magn. Reson. 179(2), 317–322 (2006) Koay, C.G., Basser, P.J.: Analytically exact correction scheme for signal extraction from noisy magnitude MR signals. J. Magn. Reson. 179(2), 317–322 (2006)
18.
go back to reference Kubicki, M., McCarley, R., Westin, C.F., Park, H.J., Maier, S., Kikinis, R., Jolesz, F.A., Shenton, M.E.: A review of diffusion tensor imaging studies in schizophrenia. J. Psychiatr. Res. 41, 15–30 (2007) Kubicki, M., McCarley, R., Westin, C.F., Park, H.J., Maier, S., Kikinis, R., Jolesz, F.A., Shenton, M.E.: A review of diffusion tensor imaging studies in schizophrenia. J. Psychiatr. Res. 41, 15–30 (2007)
19.
go back to reference Lenglet, C., Rousson, M., Deriche, R., Faugeras, O.: Statistics on the manifold of multivariate normal distributions: theory and application to diffusion tensor MRI processing. J. Math. Imaging Vis. 25(3), 423–444 (2006) Lenglet, C., Rousson, M., Deriche, R., Faugeras, O.: Statistics on the manifold of multivariate normal distributions: theory and application to diffusion tensor MRI processing. J. Math. Imaging Vis. 25(3), 423–444 (2006)
20.
go back to reference de Luis-Garcia, R., Alberola-Lopez, C., Kindlmann, G., Westin, C.F.: Automatic segmentation of white matter structures from DTI using tensor invariants and tensor orientation. In: Proc 17th Annual Meeting ISMRM. International Society for Magnetic Resonance in Medicine, Honolulu, USA (2009) de Luis-Garcia, R., Alberola-Lopez, C., Kindlmann, G., Westin, C.F.: Automatic segmentation of white matter structures from DTI using tensor invariants and tensor orientation. In: Proc 17th Annual Meeting ISMRM. International Society for Magnetic Resonance in Medicine, Honolulu, USA (2009)
21.
go back to reference Maaß, H.: Siegel’s Modular Forms and Dirichlet Series. Springer, Berlin (1971) Maaß, H.: Siegel’s Modular Forms and Dirichlet Series. Springer, Berlin (1971)
22.
go back to reference Moakher, M.: On the averaging of symmetric positive-definite tensors. J. Elast. 82, 273–296 (2006) Moakher, M.: On the averaging of symmetric positive-definite tensors. J. Elast. 82, 273–296 (2006)
23.
go back to reference Pajevic, S., Basser, P.J.: Parametric and non-parametric statistical analysis of DT-MRI data. J. Magn. Reson. 161(1), 1–14 (2003) Pajevic, S., Basser, P.J.: Parametric and non-parametric statistical analysis of DT-MRI data. J. Magn. Reson. 161(1), 1–14 (2003)
24.
go back to reference Pasternak, O., Sochen, N., Basser, P.: The effect of metric selection on the analysis of diffusion tensor MRI data. Neuroimage 49, 2190–2204 (2010) Pasternak, O., Sochen, N., Basser, P.: The effect of metric selection on the analysis of diffusion tensor MRI data. Neuroimage 49, 2190–2204 (2010)
25.
go back to reference Pennec, X.: Intrinsic statistics on Riemannian manifolds: basic tools for geometric measurements. J. Math. Imaging Vis. 25(1), 127–154 (2006). doi:10.1007/s10851-006-6228-4 Pennec, X.: Intrinsic statistics on Riemannian manifolds: basic tools for geometric measurements. J. Math. Imaging Vis. 25(1), 127–154 (2006). doi:10.1007/s10851-006-6228-4
26.
go back to reference Pierpaoli, C., Marenco, S., Rohde, G., Jones, D., Barnett, A.: Analyzing the contribution of cardiac pulsation to the variability of quantities derived from the diffusion tensor. In: Proc 11th Annual Meeting ISMRM, p. 70. International Society for Magnetic Resonance in Medicine, Toronto, Canada (2003) Pierpaoli, C., Marenco, S., Rohde, G., Jones, D., Barnett, A.: Analyzing the contribution of cardiac pulsation to the variability of quantities derived from the diffusion tensor. In: Proc 11th Annual Meeting ISMRM, p. 70. International Society for Magnetic Resonance in Medicine, Toronto, Canada (2003)
27.
go back to reference Rohde, G.K., Barnett, A.S., Basser, P.J., Marenco, S., Pierpaoli, C.: Comprehensive approach for correction of motion and distortion in diffusion-weighted MRI. Magn. Reson. Med. 51(1), 103–114 (2004) Rohde, G.K., Barnett, A.S., Basser, P.J., Marenco, S., Pierpaoli, C.: Comprehensive approach for correction of motion and distortion in diffusion-weighted MRI. Magn. Reson. Med. 51(1), 103–114 (2004)
28.
go back to reference Skare, S., Anderson, J.: On the effects of gating in diffusion imaging of the brain using single shot EPI. Magn. Reson. Imaging 19, 1125–1128 (2001) Skare, S., Anderson, J.: On the effects of gating in diffusion imaging of the brain using single shot EPI. Magn. Reson. Imaging 19, 1125–1128 (2001)
29.
go back to reference Tarantola, A.: Elements for Physics: Quantities, Qualities, and Intrinsic Theories. Springer, Berlin (2006) Tarantola, A.: Elements for Physics: Quantities, Qualities, and Intrinsic Theories. Springer, Berlin (2006)
Metadata
Title
Metric Selection and Diffusion Tensor Swelling
Authors
Ofer Pasternak
Nir Sochen
Peter J. Basser
Copyright Year
2012
Publisher
Springer Berlin Heidelberg
DOI
https://doi.org/10.1007/978-3-642-27343-8_17

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