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2015 | OriginalPaper | Chapter

MirPub v2: Towards Ranking and Refining miRNA Publication Search Results

Authors : Ilias Kanellos, Vasiliki Vlachokyriakou, Thanasis Vergoulis, Georgios Georgakilas, Yannis Vassiliou, Artemis K. Hatzigeorgiou, Theodore Dalamagas

Published in: Research and Advanced Technology for Digital Libraries

Publisher: Springer International Publishing

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Abstract

In recent years, many articles studying microRNA (miRNA) molecules and their connection to diseases have been published. However, the wide range of literature in life sciences, raises a barrier in extracting useful information from them. MirPub is a search engine that resolves this issue, providing lists of articles related to particular miRNA terms and useful filters to customise them. In this work, we extend mirPub by utilising publication ranking methods to provide insights about the importance of each publication. Moreover, we automatically identify the species referred to in each publication to serve researchers studying particular species.

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Literature
1.
go back to reference Carthew, R.W.: Gene regulation by microRNAs. Curr. Opin. Genet. Dev. 16(2), 203–208 (2006)CrossRef Carthew, R.W.: Gene regulation by microRNAs. Curr. Opin. Genet. Dev. 16(2), 203–208 (2006)CrossRef
2.
go back to reference Hwang, W., Chae, S., Kim, S., Woo, G.: Yet another paper ranking algorithm advocating recent publications. In: Proceedings of the 19th International Conference on World Wide Web, pp. 1117–1118. ACM (2010) Hwang, W., Chae, S., Kim, S., Woo, G.: Yet another paper ranking algorithm advocating recent publications. In: Proceedings of the 19th International Conference on World Wide Web, pp. 1117–1118. ACM (2010)
4.
go back to reference Page, L., et al.: Pagerank: bringing order to the web, Stanford Digital Libraries Working Paper, vol. 72 (1997) Page, L., et al.: Pagerank: bringing order to the web, Stanford Digital Libraries Working Paper, vol. 72 (1997)
6.
go back to reference Vlachos, I.S., et al.: DIANA-TarBase v7. 0: indexing more than half a million experimentally supported miRNA: mRNA interactions. Nucleic Acids Res. 43(D1), D153–D159 (2015)CrossRef Vlachos, I.S., et al.: DIANA-TarBase v7. 0: indexing more than half a million experimentally supported miRNA: mRNA interactions. Nucleic Acids Res. 43(D1), D153–D159 (2015)CrossRef
8.
go back to reference Zar, J.H.: Spearman rank correlation. In: Armitage, P., Colton, T. (eds.) Encyclopedia of Biostatistics. Wiley, Chichester (1998) Zar, J.H.: Spearman rank correlation. In: Armitage, P., Colton, T. (eds.) Encyclopedia of Biostatistics. Wiley, Chichester (1998)
9.
go back to reference Zhang, L., et al.: Genomic and epigenetic alterations deregulate microrna expression in human epithelial ovarian cancer. Proc. Nat. Acad. Sci. USA 105(19), 7004–7009 (2008)CrossRef Zhang, L., et al.: Genomic and epigenetic alterations deregulate microrna expression in human epithelial ovarian cancer. Proc. Nat. Acad. Sci. USA 105(19), 7004–7009 (2008)CrossRef
Metadata
Title
MirPub v2: Towards Ranking and Refining miRNA Publication Search Results
Authors
Ilias Kanellos
Vasiliki Vlachokyriakou
Thanasis Vergoulis
Georgios Georgakilas
Yannis Vassiliou
Artemis K. Hatzigeorgiou
Theodore Dalamagas
Copyright Year
2015
DOI
https://doi.org/10.1007/978-3-319-24592-8_34

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