Skip to main content
Top

2016 | OriginalPaper | Chapter

Multi-agent Slime Mould Computing: Mechanisms, Applications and Advances

Author : Jeff Jones

Published in: Advances in Physarum Machines

Publisher: Springer International Publishing

Activate our intelligent search to find suitable subject content or patents.

search-config
loading …

Abstract

The giant single-celled slime mould Physarum polycephalum has inspired developments in bio-inspired computing and unconventional computing substrates since the start of this century. This is primarily due to its simple component parts and the distributed nature of the ‘computation’ which it approximates during its growth, foraging and adaptation to a changing environment. Slime mould functions as a living embodied computational material which can be influenced by external stimuli. The goal of exploiting this material behaviour for unconventional computation led to the development of a simple multi-agent approach to the approximation of slime mould behaviour. The basis of the model is a simple dynamical pattern formation mechanism which exhibits self-organised formation and subsequent adaptation of collective transport networks. The system exhibits emergent properties such as relaxation and minimisation and it can be considered as a virtual material, influenced by the external application of spatial concentration gradients. In this chapter we give an overview of this multi-agent approach to unconventional computing. We describe its computational mechanisms and different generic application domains, together with concrete example applications of material computation. We examine the potential exploitation of the approach for computational geometry, path planning, combinatorial optimisation, data smoothing and statistical approximation applications.

Dont have a licence yet? Then find out more about our products and how to get one now:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literature
1.
go back to reference Adamatzky, A.: Physarum machines: encapsulating reaction-diffusion to compute spanning tree. Naturwissenschaften 94(12), 975–980 (2007)CrossRef Adamatzky, A.: Physarum machines: encapsulating reaction-diffusion to compute spanning tree. Naturwissenschaften 94(12), 975–980 (2007)CrossRef
2.
go back to reference Adamatzky, A.: Developing proximity graphs by Physarum polycephalum: does the plasmodium follow the toussaint hierarchy. Parallel Process. Lett. 19, 105–127 (2008)MathSciNetCrossRef Adamatzky, A.: Developing proximity graphs by Physarum polycephalum: does the plasmodium follow the toussaint hierarchy. Parallel Process. Lett. 19, 105–127 (2008)MathSciNetCrossRef
3.
4.
go back to reference Adamatzky, A.: If BZ medium did spanning trees these would be the same trees as Physarum built. Phys. Lett. A 373(10), 952–956 (2009)CrossRefMATH Adamatzky, A.: If BZ medium did spanning trees these would be the same trees as Physarum built. Phys. Lett. A 373(10), 952–956 (2009)CrossRefMATH
5.
go back to reference Adamatzky, A.: Physarum Machines: Computers from Slime Mould, vol. 74. World Scientific Publishing Company, Inc., (2010) Adamatzky, A.: Physarum Machines: Computers from Slime Mould, vol. 74. World Scientific Publishing Company, Inc., (2010)
6.
go back to reference Adamatzky, A.: Slime mould computes planar shapes. Int. J. Bio-Inspired Comput. 4(3), 149–154 (2012)CrossRef Adamatzky, A.: Slime mould computes planar shapes. Int. J. Bio-Inspired Comput. 4(3), 149–154 (2012)CrossRef
7.
go back to reference Adamatzky, A., de Lacy Costello B., Shirakawa, T.: Universal computation with limited resources: Belousov-zhabotinsky and Physarum computers. Int. J. Bifurcat. Chaos 18(8), 2373–2389 (2008) Adamatzky, A., de Lacy Costello B., Shirakawa, T.: Universal computation with limited resources: Belousov-zhabotinsky and Physarum computers. Int. J. Bifurcat. Chaos 18(8), 2373–2389 (2008)
9.
go back to reference Aono, M., Hirata, Y., Hara, M., Aihara, K.: Amoeba-based chaotic neurocomputing: combinatorial optimization by coupled biological oscillators. New Gener. Comput. 27(2), 129–157 (2009)CrossRefMATH Aono, M., Hirata, Y., Hara, M., Aihara, K.: Amoeba-based chaotic neurocomputing: combinatorial optimization by coupled biological oscillators. New Gener. Comput. 27(2), 129–157 (2009)CrossRefMATH
10.
go back to reference Asai, T., De-Lacy Costello, B., Adamatzky, A.: Silicon implementation of a chemical reaction-diffusion processor for computation of voronoi diagram. Int. J. Bifurcat. Chaos 15(10), 3307–3320 (2005) Asai, T., De-Lacy Costello, B., Adamatzky, A.: Silicon implementation of a chemical reaction-diffusion processor for computation of voronoi diagram. Int. J. Bifurcat. Chaos 15(10), 3307–3320 (2005)
11.
go back to reference Baumgarten, W., Jones, J., Hauser, M.J.B. Network coarsening dynamics in a plasmodial slime mould: modelling and experiments. Acta Physica Polonica B 46(6) (2015). In-press Baumgarten, W., Jones, J., Hauser, M.J.B. Network coarsening dynamics in a plasmodial slime mould: modelling and experiments. Acta Physica Polonica B 46(6) (2015). In-press
12.
go back to reference Boschetti, F., Gray, R.: A turing test for emergence. Advances in applied self-organizing systems, pp. 349–364 (2008) Boschetti, F., Gray, R.: A turing test for emergence. Advances in applied self-organizing systems, pp. 349–364 (2008)
13.
go back to reference Cohen, L.D.: On active contour models and balloons. CVGIP: Image Underst. 53(2), 211–218 (1991)CrossRefMATH Cohen, L.D.: On active contour models and balloons. CVGIP: Image Underst. 53(2), 211–218 (1991)CrossRefMATH
14.
go back to reference De Berg, M., Cheong, O., Van Kreveld, M.: Computational geometry: algorithms and applications. Springer, New York (2008) De Berg, M., Cheong, O., Van Kreveld, M.: Computational geometry: algorithms and applications. Springer, New York (2008)
15.
go back to reference De Boor, C.: A practical guide to splines, vol. 27. Springer, New York (1978) De Boor, C.: A practical guide to splines, vol. 27. Springer, New York (1978)
16.
go back to reference de Lacy Costello, B., Ratcliffe, N., Adamatzky, A., Zanin, A.L., Liehr, A.W., Purwins, H.G.: The formation of Voronoi diagrams in chemical and physical systems: experimental findings and theoretical models. Int. J. Bifurcat. Chaos Appl. Sci. Eng. 14(7), 2187–2210 (2004) de Lacy Costello, B., Ratcliffe, N., Adamatzky, A., Zanin, A.L., Liehr, A.W., Purwins, H.G.: The formation of Voronoi diagrams in chemical and physical systems: experimental findings and theoretical models. Int. J. Bifurcat. Chaos Appl. Sci. Eng. 14(7), 2187–2210 (2004)
17.
go back to reference Dorigo, M., Bonabeau, E., Theraulaz, G.: Ant algorithms and stigmergy. Future Gener. Comput. Syst. 16(8), 851–871 (2000)CrossRef Dorigo, M., Bonabeau, E., Theraulaz, G.: Ant algorithms and stigmergy. Future Gener. Comput. Syst. 16(8), 851–871 (2000)CrossRef
18.
go back to reference Dorigo, M., Stutzle, T.: Ant colony optimization (2004) Dorigo, M., Stutzle, T.: Ant colony optimization (2004)
19.
go back to reference Duckham, M., Kulik, L., Worboys, M., Galton, A.: Efficient generation of simple polygons for characterizing the shape of a set of points in the plane. Pattern Recogn. 41(10), 3224–3236 (2008)CrossRefMATH Duckham, M., Kulik, L., Worboys, M., Galton, A.: Efficient generation of simple polygons for characterizing the shape of a set of points in the plane. Pattern Recogn. 41(10), 3224–3236 (2008)CrossRefMATH
20.
go back to reference Durbin, R., Willshaw, D.: An analogue approach to the travelling salesman problem using an elastic net method. Nature 326(6114), 689–691 (1987)CrossRef Durbin, R., Willshaw, D.: An analogue approach to the travelling salesman problem using an elastic net method. Nature 326(6114), 689–691 (1987)CrossRef
21.
go back to reference Edelsbrunner, H., Kirkpatrick, D., Seidel, R.: On the shape of a set of points in the plane. Inf. Theor, IEEE Trans. 29(4), 551–559 (1983)MathSciNetCrossRefMATH Edelsbrunner, H., Kirkpatrick, D., Seidel, R.: On the shape of a set of points in the plane. Inf. Theor, IEEE Trans. 29(4), 551–559 (1983)MathSciNetCrossRefMATH
22.
go back to reference Eilers, P.H.C., Marx, B.D.: Flexible smoothing with b-splines and penalties. Stat. Sci. 89–102 (1996) Eilers, P.H.C., Marx, B.D.: Flexible smoothing with b-splines and penalties. Stat. Sci. 89–102 (1996)
23.
go back to reference Foretník, J.: Architektura, geometrie a vỳpočetní technika. Ph.D. thesis (2010) Foretník, J.: Architektura, geometrie a vỳpočetní technika. Ph.D. thesis (2010)
25.
go back to reference Salomaa, A., Paun, G., Rozenberg, G.: DNA Computing: New Computing Paradigms. Texts in Theoretical Computer Science. Springer, New York (1998) Salomaa, A., Paun, G., Rozenberg, G.: DNA Computing: New Computing Paradigms. Texts in Theoretical Computer Science. Springer, New York (1998)
26.
go back to reference Galton, A., Duckham, M.: What is the region occupied by a set of points? In: Raubal, M., Miller, H.J., Frank, A.U., Goodchild, M.F. (eds.) GIScience 2006. LNCS, vol. 4197, pp. 81–98. Springer, Heidelberg (2006) Galton, A., Duckham, M.: What is the region occupied by a set of points? In: Raubal, M., Miller, H.J., Frank, A.U., Goodchild, M.F. (eds.) GIScience 2006. LNCS, vol. 4197, pp. 81–98. Springer, Heidelberg (2006)
27.
go back to reference Gunji, Y.-P., Shirakawa, T., Niizato, T., Haruna, T.: Minimal model of a cell connecting amoebic motion and adaptive transport networks. J. Theor. Biol. 253(4), 659–667 (2008)CrossRef Gunji, Y.-P., Shirakawa, T., Niizato, T., Haruna, T.: Minimal model of a cell connecting amoebic motion and adaptive transport networks. J. Theor. Biol. 253(4), 659–667 (2008)CrossRef
28.
go back to reference Gunji, Y.-P., Shirakawa, T., Niizato, T., Yamachiyo, M., Tani, I.: An adaptive and robust biological network based on the vacant-particle transportation model. J. Theor. Biol. 272(1), 187–200 (2011)CrossRef Gunji, Y.-P., Shirakawa, T., Niizato, T., Yamachiyo, M., Tani, I.: An adaptive and robust biological network based on the vacant-particle transportation model. J. Theor. Biol. 272(1), 187–200 (2011)CrossRef
29.
go back to reference Hasegawa, M.: Verification and rectification of the physical analogy of simulated annealing for the solution of the traveling salesman problem. Phys. Rev. E 83(3), 036708 (2011)MathSciNetCrossRef Hasegawa, M.: Verification and rectification of the physical analogy of simulated annealing for the solution of the traveling salesman problem. Phys. Rev. E 83(3), 036708 (2011)MathSciNetCrossRef
30.
go back to reference Heimann, T., Meinzer, H.-P.: Statistical shape models for 3d medical image segmentation: a review. Med. Image Anal. 13(4), 543–563 (2009)CrossRef Heimann, T., Meinzer, H.-P.: Statistical shape models for 3d medical image segmentation: a review. Med. Image Anal. 13(4), 543–563 (2009)CrossRef
31.
go back to reference Hickey, D.S., Noriega, L.A.: Relationship between structure and information processing in Physarum polycephalum. Int. J. Model. Ident. Control 4(4), 348–356 (2008)CrossRef Hickey, D.S., Noriega, L.A.: Relationship between structure and information processing in Physarum polycephalum. Int. J. Model. Ident. Control 4(4), 348–356 (2008)CrossRef
32.
go back to reference Hopfield, J.J., Tank, D.W.: Computing with neural circuits: a model. Science 233(4764), 625 (1986)CrossRefMATH Hopfield, J.J., Tank, D.W.: Computing with neural circuits: a model. Science 233(4764), 625 (1986)CrossRefMATH
33.
go back to reference Hou, H., Andrews, H.: Cubic splines for image interpolation and digital filtering. Acoust., Speech Signal Process., IEEE Trans. 26(6), 508–517 (1978)CrossRefMATH Hou, H., Andrews, H.: Cubic splines for image interpolation and digital filtering. Acoust., Speech Signal Process., IEEE Trans. 26(6), 508–517 (1978)CrossRefMATH
34.
go back to reference Ishiguro, A., Shimizu, M., Kawakatsu, T.: Don’t try to control everything!: an emergent morphology control of a modular robot. In: Proceedings of 2004 IEEE/RSJ international conference on intelligent robots and systems, pp. 981–985. Sendai, Japan, Sept 28–Oct 2 2004 Ishiguro, A., Shimizu, M., Kawakatsu, T.: Don’t try to control everything!: an emergent morphology control of a modular robot. In: Proceedings of 2004 IEEE/RSJ international conference on intelligent robots and systems, pp. 981–985. Sendai, Japan, Sept 28–Oct 2 2004
35.
go back to reference Jaromczyk, J.W., Toussaint, G.T.: Relative neighborhood graphs and their relatives. Proc. IEEE 80(9), 1502–1517 (1992)CrossRef Jaromczyk, J.W., Toussaint, G.T.: Relative neighborhood graphs and their relatives. Proc. IEEE 80(9), 1502–1517 (1992)CrossRef
36.
go back to reference Jarvis, R.A.: On the identification of the convex hull of a finite set of points in the plane. Inf. Process. Lett. 2(1), 18–21 (1973)CrossRefMATH Jarvis, R.A.: On the identification of the convex hull of a finite set of points in the plane. Inf. Process. Lett. 2(1), 18–21 (1973)CrossRefMATH
37.
go back to reference Jones, J., Mayne, R., Adamatzky, A.: Representation of shape mediated by environmental stimuli in physarum polycephalum and a multi-agent model. Int. J. Parallel, Emergent Distrib. Syst. 0(0), 1–19 (2015) Jones, J., Mayne, R., Adamatzky, A.: Representation of shape mediated by environmental stimuli in physarum polycephalum and a multi-agent model. Int. J. Parallel, Emergent Distrib. Syst. 0(0), 1–19 (2015)
38.
go back to reference Jones, J.: Characteristics of pattern formation and evolution in approximations of Physarum transport networks. Artif. Life 16(2), 127–153 (2010)CrossRef Jones, J.: Characteristics of pattern formation and evolution in approximations of Physarum transport networks. Artif. Life 16(2), 127–153 (2010)CrossRef
39.
go back to reference Jones, J.: The emergence and dynamical evolution of complex transport networks from simple low-level behaviours. Int. J. Unconventional Comput. 6(2), 125–144 (2010) Jones, J.: The emergence and dynamical evolution of complex transport networks from simple low-level behaviours. Int. J. Unconventional Comput. 6(2), 125–144 (2010)
40.
go back to reference Jones, J.: Influences on the formation and evolution of physarum polycephalum inspired emergent transport networks. Nat. Comput. 10(4), 1345–1369 (2011)MathSciNetCrossRef Jones, J.: Influences on the formation and evolution of physarum polycephalum inspired emergent transport networks. Nat. Comput. 10(4), 1345–1369 (2011)MathSciNetCrossRef
41.
go back to reference Jones, J.: Towards programmable smart materials: Dynamical reconfiguration of emergent transport networks. Int. Journal of Unconventional Comput. 7(6), 423–447 (2011) Jones, J.: Towards programmable smart materials: Dynamical reconfiguration of emergent transport networks. Int. Journal of Unconventional Comput. 7(6), 423–447 (2011)
42.
go back to reference Jones, J.: From pattern formation to material computation: multi-agent modelling of physarum polycephalum, vol. 15. Springer, New York (2015) Jones, J.: From pattern formation to material computation: multi-agent modelling of physarum polycephalum, vol. 15. Springer, New York (2015)
43.
go back to reference Jones, J.: Mechanisms inducing parallel computation in a model of physarum polycephalum transport networks. Parallel Process. Lett. 25(01), 1540004 (2015)MathSciNetCrossRef Jones, J.: Mechanisms inducing parallel computation in a model of physarum polycephalum transport networks. Parallel Process. Lett. 25(01), 1540004 (2015)MathSciNetCrossRef
44.
45.
go back to reference Jones, J., Adamatzky, A.: Emergence of self-organized amoeboid movement in a multi-agent approximation of Physarum polycephalum. Bioinspiration Biomimetics 7(1), 016009 (2012)CrossRef Jones, J., Adamatzky, A.: Emergence of self-organized amoeboid movement in a multi-agent approximation of Physarum polycephalum. Bioinspiration Biomimetics 7(1), 016009 (2012)CrossRef
46.
go back to reference Jones, J., Adamatzky, A.: Slime mould inspired generalised voronoi diagrams with repulsive fields. In-Press, Int. J. Bifurcat. Chaos (2013) Jones, J., Adamatzky, A.: Slime mould inspired generalised voronoi diagrams with repulsive fields. In-Press, Int. J. Bifurcat. Chaos (2013)
47.
go back to reference Jones, J., Adamatzky, A.: Approximation of statistical analysis and estimation by morphological adaptation in a model of slime mould. Int. J. Unconventional Comput., In Press (2014) Jones, J., Adamatzky, A.: Approximation of statistical analysis and estimation by morphological adaptation in a model of slime mould. Int. J. Unconventional Comput., In Press (2014)
48.
go back to reference Jones, J., Adamatzky, A.: Computation of the travelling salesman problem by a shrinking blob. Nat. Comput. 13(1), 1–16 (2014)MathSciNetCrossRef Jones, J., Adamatzky, A.: Computation of the travelling salesman problem by a shrinking blob. Nat. Comput. 13(1), 1–16 (2014)MathSciNetCrossRef
49.
go back to reference Jones, J., Adamatzky, A.: Material approximation of data smoothing and spline curves inspired by slime mould. Bioinspiration Biomimetics 9(3), 036016 (2014)CrossRef Jones, J., Adamatzky, A.: Material approximation of data smoothing and spline curves inspired by slime mould. Bioinspiration Biomimetics 9(3), 036016 (2014)CrossRef
50.
go back to reference Jump, J.A.: Studies on sclerotization in physarum polycephalum. Am. J. Botany, pp. 561–567 (1954) Jump, J.A.: Studies on sclerotization in physarum polycephalum. Am. J. Botany, pp. 561–567 (1954)
51.
go back to reference Kass, M., Witkin, A., Terzopoulos, D.: Snakes: active contour models. Int. J. Comput. Vision 1(4), 321–331 (1988)CrossRefMATH Kass, M., Witkin, A., Terzopoulos, D.: Snakes: active contour models. Int. J. Comput. Vision 1(4), 321–331 (1988)CrossRefMATH
52.
go back to reference Koza, J., Poli, R.: Genetic Programming. Search Methodologies, pp. 127–164 (2005) Koza, J., Poli, R.: Genetic Programming. Search Methodologies, pp. 127–164 (2005)
53.
go back to reference Larranaga, P., Kuijpers, C.M.H., Murga, R.H., Inza, I., Dizdarevic, S.: Genetic algorithms for the travelling salesman problem: a review of representations and operators. Artif. Intell. Rev. 13(2), 129–170 (1999)CrossRef Larranaga, P., Kuijpers, C.M.H., Murga, R.H., Inza, I., Dizdarevic, S.: Genetic algorithms for the travelling salesman problem: a review of representations and operators. Artif. Intell. Rev. 13(2), 129–170 (1999)CrossRef
54.
go back to reference Lihoreau, M., Chittka, L., Raine, N.E.: Travel optimization by foraging bumblebees through readjustments of traplines after discovery of new feeding locations. Am. Nat. 176(6), 744–757 (2010)CrossRef Lihoreau, M., Chittka, L., Raine, N.E.: Travel optimization by foraging bumblebees through readjustments of traplines after discovery of new feeding locations. Am. Nat. 176(6), 744–757 (2010)CrossRef
55.
go back to reference Matsumoto, K., Ueda, T., Kobatake, Y.: Reversal of thermotaxis with oscillatory stimulation in the plasmodium of Physarum polycephalum. J. Theor. Biol. 131, 175–182 (1988)CrossRef Matsumoto, K., Ueda, T., Kobatake, Y.: Reversal of thermotaxis with oscillatory stimulation in the plasmodium of Physarum polycephalum. J. Theor. Biol. 131, 175–182 (1988)CrossRef
56.
go back to reference Mitchell, M.: An introduction to genetic algorithms. MIT Press, Cambridge, MA, USA (1996)MATH Mitchell, M.: An introduction to genetic algorithms. MIT Press, Cambridge, MA, USA (1996)MATH
57.
go back to reference Murray, J.D.: On pattern formation mechanisms for lepidopteran wing patterns and mammalian coat markings. Philos. Trans. Royal Soc. Lond. B, Biol. Sci., 295(1078), 473–496 (1981) Murray, J.D.: On pattern formation mechanisms for lepidopteran wing patterns and mammalian coat markings. Philos. Trans. Royal Soc. Lond. B, Biol. Sci., 295(1078), 473–496 (1981)
58.
go back to reference Nakagaki, T., Kobayashi, R., Nishiura, Y., Ueda, T.: Obtaining multiple separate food sources: behavioural intelligence in the Physarum plasmodium. R. Soc. Proc.: Biol. Sci., 271(1554), 2305–2310 (2004) Nakagaki, T., Kobayashi, R., Nishiura, Y., Ueda, T.: Obtaining multiple separate food sources: behavioural intelligence in the Physarum plasmodium. R. Soc. Proc.: Biol. Sci., 271(1554), 2305–2310 (2004)
59.
go back to reference Oster, G.F., Odell, G.M.: Mechanics of cytogels I: oscillations in Physarum. Cell Motil. 4(6), 469–503 (1984)CrossRef Oster, G.F., Odell, G.M.: Mechanics of cytogels I: oscillations in Physarum. Cell Motil. 4(6), 469–503 (1984)CrossRef
60.
go back to reference Pershin, Y.V., La Fontaine, S., Di Ventra, M.: Memristive model of amoeba learning. Phys. Rev. E 80(2), 021926 (2009)CrossRef Pershin, Y.V., La Fontaine, S., Di Ventra, M.: Memristive model of amoeba learning. Phys. Rev. E 80(2), 021926 (2009)CrossRef
61.
go back to reference Privman, V., Arugula, M.A., Halámek, J., Pita, M., Katz, E.: Network analysis of biochemical logic for noise reduction and stability: A system of three coupled enzymatic and gates. J. Phys. Chem. B 113(15), 5301–5310 (2009)CrossRef Privman, V., Arugula, M.A., Halámek, J., Pita, M., Katz, E.: Network analysis of biochemical logic for noise reduction and stability: A system of three coupled enzymatic and gates. J. Phys. Chem. B 113(15), 5301–5310 (2009)CrossRef
62.
go back to reference Radszuweit, M., Engel, H., Bär, M.: A model for oscillations and pattern formation in protoplasmic droplets of Physarum polycephalum. Eur. Phys. Journal-Special Top. 191(1), 159–172 (2010)CrossRef Radszuweit, M., Engel, H., Bär, M.: A model for oscillations and pattern formation in protoplasmic droplets of Physarum polycephalum. Eur. Phys. Journal-Special Top. 191(1), 159–172 (2010)CrossRef
64.
go back to reference Reyes, D.R., Ghanem, M.M., Whitesides, G.M., Manz, A.: Glow discharge in microfluidic chips for visible analog computing. Lab Chip 2(2), 113–116 (2002)CrossRef Reyes, D.R., Ghanem, M.M., Whitesides, G.M., Manz, A.: Glow discharge in microfluidic chips for visible analog computing. Lab Chip 2(2), 113–116 (2002)CrossRef
65.
go back to reference Ronald, E.M.A., Sipper, M., Capcarrère, M.S.: Design, observation, surprise! a test of emergence. Artif. Life 5(3), 225–239 (1999)CrossRef Ronald, E.M.A., Sipper, M., Capcarrère, M.S.: Design, observation, surprise! a test of emergence. Artif. Life 5(3), 225–239 (1999)CrossRef
66.
go back to reference Saigusa, T., Tero, A., Nakagaki, T., Kuramoto, Y.: Amoebae anticipate periodic events. Phys. Rev. Lett. 100(1), 18101 (2008)CrossRef Saigusa, T., Tero, A., Nakagaki, T., Kuramoto, Y.: Amoebae anticipate periodic events. Phys. Rev. Lett. 100(1), 18101 (2008)CrossRef
67.
go back to reference Sawa, K., Balaž, I., Shirakawa, T.: Cell motility viewed as softness. Int. J. Artif. Life Res. (IJALR) 3(1), 1–9 (2012)CrossRef Sawa, K., Balaž, I., Shirakawa, T.: Cell motility viewed as softness. Int. J. Artif. Life Res. (IJALR) 3(1), 1–9 (2012)CrossRef
68.
go back to reference Sellares, J.A., Toussaint, G.: On the role of kinesthetic thinking in computational geometry. Int. J. Math. Edu. Sci. Technol. 34(2), 219–237 (2003)CrossRef Sellares, J.A., Toussaint, G.: On the role of kinesthetic thinking in computational geometry. Int. J. Math. Edu. Sci. Technol. 34(2), 219–237 (2003)CrossRef
69.
go back to reference Sherratt, J.A., Lewis, J.: Stress-induced alignment of actin filaments and the mechanics of cytogel. Bull. Math. Biol. 55(3), 637–654 (1993)CrossRefMATH Sherratt, J.A., Lewis, J.: Stress-induced alignment of actin filaments and the mechanics of cytogel. Bull. Math. Biol. 55(3), 637–654 (1993)CrossRefMATH
70.
go back to reference Shirakawa, T., Adamatzky, A., Gunji, Y.-P., Miyake, Y.: On simultaneous construction of voronoi diagram and delaunay triangulation by Physarum polycephalum. Int. J. Bifurcat. Chaos 19(9), 3109–3117 (2009)CrossRef Shirakawa, T., Adamatzky, A., Gunji, Y.-P., Miyake, Y.: On simultaneous construction of voronoi diagram and delaunay triangulation by Physarum polycephalum. Int. J. Bifurcat. Chaos 19(9), 3109–3117 (2009)CrossRef
71.
go back to reference Shirakawa, T., Gunji, Y.-P.: Computation of Voronoi diagram and collision-free path using the Plasmodium of Physarum polycephalum. Int. J. Unconventional Comput. 6(2), 79–88 (2010) Shirakawa, T., Gunji, Y.-P.: Computation of Voronoi diagram and collision-free path using the Plasmodium of Physarum polycephalum. Int. J. Unconventional Comput. 6(2), 79–88 (2010)
73.
go back to reference Takagi, S., Ueda, T.: Emergence and transitions of dynamic patterns of thickness oscillation of the plasmodium of the true slime mold Physarum polycephalum. Physica D 237, 420–427 (2008)CrossRef Takagi, S., Ueda, T.: Emergence and transitions of dynamic patterns of thickness oscillation of the plasmodium of the true slime mold Physarum polycephalum. Physica D 237, 420–427 (2008)CrossRef
74.
go back to reference Takamatsu, A., Takaba, E., Takizawa, G.: Environment-dependent morphology in plasmodium of true slime mold Physarum polycephalum and a network growth model. J. Theor. Biol. 256(1), 29–44 (2009)MathSciNetCrossRef Takamatsu, A., Takaba, E., Takizawa, G.: Environment-dependent morphology in plasmodium of true slime mold Physarum polycephalum and a network growth model. J. Theor. Biol. 256(1), 29–44 (2009)MathSciNetCrossRef
75.
go back to reference Takamatsu, A., Takahashi, K., Nagao, M., Tsuchiya, Y.: Frequency coupling model for dynamics of responces to stimuli in plasmodium of Physarum polycephalum. J. Phys. Soc. Jpn. 66, 1638–1646 (1997)CrossRef Takamatsu, A., Takahashi, K., Nagao, M., Tsuchiya, Y.: Frequency coupling model for dynamics of responces to stimuli in plasmodium of Physarum polycephalum. J. Phys. Soc. Jpn. 66, 1638–1646 (1997)CrossRef
76.
go back to reference Teplov, V.A., Romanovsky, Y.M., Latushkin, O.A.: A continuum model of contraction waves and protoplasm streaming in strands of Physarum plasmodium. Biosystems 24(4), 269–289 (1991)CrossRef Teplov, V.A., Romanovsky, Y.M., Latushkin, O.A.: A continuum model of contraction waves and protoplasm streaming in strands of Physarum plasmodium. Biosystems 24(4), 269–289 (1991)CrossRef
77.
go back to reference Tero, A., Kobayashi, R., Nakagaki, T.: A coupled-oscillator model with a conservation law for the rhythmic amoeboid movements of plasmodial slime molds. Physica D 205(1), 125–135 (2005)CrossRefMATH Tero, A., Kobayashi, R., Nakagaki, T.: A coupled-oscillator model with a conservation law for the rhythmic amoeboid movements of plasmodial slime molds. Physica D 205(1), 125–135 (2005)CrossRefMATH
78.
go back to reference Tero, A., Kobayashi, R., Nakagaki, T.: Physarum solver: a biologically inspired method of road-network navigation. Phys. A 363(1), 115–119 (2006)CrossRef Tero, A., Kobayashi, R., Nakagaki, T.: Physarum solver: a biologically inspired method of road-network navigation. Phys. A 363(1), 115–119 (2006)CrossRef
79.
go back to reference Tero, A., Nakagaki, T., Toyabe, K., Yumiki, K., Kobayashi, R.: A method inspired by Physarum for solving the steiner problem. Int. J. Unconventional Comput. 6, 109–123 (2010) Tero, A., Nakagaki, T., Toyabe, K., Yumiki, K., Kobayashi, R.: A method inspired by Physarum for solving the steiner problem. Int. J. Unconventional Comput. 6, 109–123 (2010)
80.
go back to reference Tero, A., Takagi, S., Saigusa, T., Ito, K., Bebber, D.P., Fricker, M.D., Yumiki, K., Kobayashi, R., Nakagaki, T.: Rules for biologically inspired adaptive network design. Science 327(5964), 439–442 (2010)MathSciNetCrossRefMATH Tero, A., Takagi, S., Saigusa, T., Ito, K., Bebber, D.P., Fricker, M.D., Yumiki, K., Kobayashi, R., Nakagaki, T.: Rules for biologically inspired adaptive network design. Science 327(5964), 439–442 (2010)MathSciNetCrossRefMATH
81.
go back to reference Tero, A., Yumiki, K., Kobayashi, R., Saigusa, T., Nakagaki, T.: Flow-network adaptation in Physarum amoebae. Theory Biosci. 127(2), 89–94 (2008)CrossRef Tero, A., Yumiki, K., Kobayashi, R., Saigusa, T., Nakagaki, T.: Flow-network adaptation in Physarum amoebae. Theory Biosci. 127(2), 89–94 (2008)CrossRef
82.
go back to reference Tolmachiev, D., Adamatzky, A.: Chemical processor for computation of voronoi diagram. Adv. Mater. Opt. Electron. 6(4), 191–196 (1996)CrossRef Tolmachiev, D., Adamatzky, A.: Chemical processor for computation of voronoi diagram. Adv. Mater. Opt. Electron. 6(4), 191–196 (1996)CrossRef
84.
go back to reference Tsuda, S., Jones, J.: The emergence of synchronization behavior in Physarum polycephalum and its particle approximation. Biosystems 103, 331–341 (2010)CrossRef Tsuda, S., Jones, J.: The emergence of synchronization behavior in Physarum polycephalum and its particle approximation. Biosystems 103, 331–341 (2010)CrossRef
85.
go back to reference Tsuda, S., Jones, J., Adamatzky, A.: Towards Physarum engines. Appl. Bion. Biomech. 9(3), 221–240 (2012)CrossRef Tsuda, S., Jones, J., Adamatzky, A.: Towards Physarum engines. Appl. Bion. Biomech. 9(3), 221–240 (2012)CrossRef
86.
go back to reference Turk, G.: Generating textures on arbitrary surfaces using reaction-diffusion. Comput. Graph. 25(4), 289–298 (1991)CrossRef Turk, G.: Generating textures on arbitrary surfaces using reaction-diffusion. Comput. Graph. 25(4), 289–298 (1991)CrossRef
87.
go back to reference Zanin, A.L., Liehr, A.W., Moskalenko, A.S., Purwins, H.G.: Voronoi diagrams in barrier gas discharge. Appl. Phys. Lett. 81, 3338 (2002)CrossRef Zanin, A.L., Liehr, A.W., Moskalenko, A.S., Purwins, H.G.: Voronoi diagrams in barrier gas discharge. Appl. Phys. Lett. 81, 3338 (2002)CrossRef
Metadata
Title
Multi-agent Slime Mould Computing: Mechanisms, Applications and Advances
Author
Jeff Jones
Copyright Year
2016
DOI
https://doi.org/10.1007/978-3-319-26662-6_22

Premium Partner