Issue 2/2011
Special issue "Petri Nets for Systems and Synthetic Biology, Part I: Bridging Gaps" Part II: Special issue "Computing with Biomolecules"
Content (19 Articles)
Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networks
Wolfgang Marwan, Annegret Wagler, Robert Weismantel
The combinatorics of modeling and analyzing biological systems
Annegret K. Wagler, Robert Weismantel
A Petri net representation of Bayesian message flows: importance of Bayesian networks for biological applications
Kurt Lautenbach, Alexander Pinl
Petri net representation of multi-valued logical regulatory graphs
C. Chaouiya, A. Naldi, E. Remy, D. Thieffry
Theoretical and computational properties of transpositions
Mark Daley, Ian McQuillan, James M. McQuillan, Kalpana Mahalingam
(Tissue) P systems working in the k-restricted minimally or maximally parallel transition mode
Rudolf Freund, Sergey Verlan
Computational power of insertion–deletion (P) systems with rules of size two
Alexander Krassovitskiy, Yurii Rogozhin, Sergey Verlan
A software tool for generating graphics by means of P systems
Elena Rivero-Gil, Miguel Á. Gutiérrez-Naranjo, Álvaro Romero-Jiménez, Agustín Riscos-Núñez
Evolutionary computation approaches to the Curriculum Sequencing problem
Sarab Al-Muhaideb, Mohamed El Bachir Menai
Electrostatic field framework for supervised and semi-supervised learning from incomplete data
Marcin Budka, Bogdan Gabrys
Padlock probe-mediated qRT-PCR for DNA computing answer determination
Fusheng Xiong, Wayne D. Frasch
Graph multiset transformation: a new framework for massively parallel computation inspired by DNA computing
Hans-Jörg Kreowski, Sabine Kuske