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2014 | OriginalPaper | Chapter

Parallel Biological In Silico Simulation

Authors : Patrick Amar, Muriel Baillieul, Dominique Barth, Bertrand LeCun, Franck Quessette, Sandrine Vial

Published in: Information Sciences and Systems 2014

Publisher: Springer International Publishing

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Abstract

It is crucial to understand how biological systems work, in particular the metabolic pathways, if we want to be able to understand diseases. One of the author has developed HSIM, a simulator dedicated to the biochemical simulation of the reactions inside the compartments of a virtual cell. Another author is the leader in the development of bobpp a high level parallelization framework. In this article, we propose an important improvement of bobpp in order to run HSIM in parallel. This will allow us to simulate more complex models, involving more chemical species and reactions, leading to more realistic results using a smaller amount of computing time.

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Footnotes
1
This software is freely available at http://​www.​lri.​fr/​~pa/​Hsim.
 
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Metadata
Title
Parallel Biological In Silico Simulation
Authors
Patrick Amar
Muriel Baillieul
Dominique Barth
Bertrand LeCun
Franck Quessette
Sandrine Vial
Copyright Year
2014
Book
Information Sciences and Systems 2014

Print ISBN: 978-3-319-09464-9

Electronic ISBN: 978-3-319-09465-6

Copyright Year: 2014

DOI
https://doi.org/10.1007/978-3-319-09465-6_40

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