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2019 | OriginalPaper | Chapter

Significance of Global Vectors Representation in Protein Sequences Analysis

Authors : Anon George, H. B. Barathi Ganesh, M. Anand Kumar, K. P. Soman

Published in: Computer Aided Intervention and Diagnostics in Clinical and Medical Images

Publisher: Springer International Publishing

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Abstract

Understanding the meaning of protein sequences is tedious with human efforts alone. Through this work, we experiment an NLP technique to extract features and give appropriate representation for the protein sequences. In this paper, we have used GloVe representation for the same. A dataset named Swiss-Prot has been incorporated into this work. We were able to create a representation that has comparable ability to understand the semantics of protein sequences compared to the existing ones. We have analyzed the performance of representation by the classification of different protein families in the Swiss-Prot dataset using machine learning technique. The analysis done by us proved the significance of this representation.

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Literature
1.
Ando D, Colvin M, Rexach M, Gopinathan A (2013) Physical motif clustering within intrinsically disordered nucleoporin sequences reveals universal functional features. PloS One 8(9):e73,831CrossRef
2.
Asgari E, Mofrad MR (2015) Continuous distributed representation of biological sequences for deep proteomics and genomics. PloS One 10(11):e0141,287CrossRef
3.
Balakrishnan BGH, Vinayakumar AKM, Padannayil SK. Nlp cen amrita@ smm4h: health care text classification through class embeddings
4.
Barathi Ganesh H, Anand Kumar M, Soman K (2016) Distributional semantic representation in health care text classification. CEUR 1737
5.
Bork P, Dandekar T, Diaz-Lazcoz Y, Eisenhaber F, Huynen M, Yuan Y (1998) Predicting function: from genes to genomes and back1. J Mol Biol 283(4):707–725CrossRef
6.
Cai C, Han L, Ji ZL, Chen X, Chen YZ (2003) Svm-prot: web-based support vector machine software for functional classification of a protein from its primary sequence. Nucleic Acids Res 31(13):3692–3697CrossRef
7.
Ganesh HB, Kumar MA, Soman K (2016) From vector space models to vector space models of semantics. In: Forum for information retrieval evaluation. Springer, Berlin, pp 50–60
8.
George A, Soman K et al (2018) Teamcen at semeval-2018 task 1: global vectors representation in emotion detection. In: Proceedings of the 12th international workshop on semantic evaluation, pp 334–338
9.
Huynen M, Snel B, Lathe W, Bork P (2000) Predicting protein function by genomic context: quantitative evaluation and qualitative inferences. Genome Res 10(8):1204–1210CrossRef
10.
Lasko TA, Denny JC, Levy MA (2013) Computational phenotype discovery using unsupervised feature learning over noisy, sparse, and irregular clinical data. PloS One 8(6):e66,341CrossRef
11.
Mikolov T, Sutskever I, Chen K, Corrado GS, Dean J (2013) Distributed representations of words and phrases and their compositionality. In: Advances in neural information processing systems, pp 3111–3119
12.
Motomura K, Fujita T, Tsutsumi M, Kikuzato S, Nakamura M, Otaki JM (2012) Word decoding of protein amino acid sequences with availability analysis: a linguistic approach. PloS One 7(11):e50,039CrossRef
13.
Murzin AG, Brenner SE, Hubbard T, Chothia C (1995) Scop: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 247(4):536–540
14.
Pennington J, Socher R, Manning C (2014) Glove: global vectors for word representation. In: Proceedings of the 2014 conference on empirical methods in natural language processing (EMNLP), pp 1532–1543
15.
16.
Suykens JA, Vandewalle J (1999) Least squares support vector machine classifiers. Neural Process Lett 9(3):293–300CrossRef
Metadata
Title
Significance of Global Vectors Representation in Protein Sequences Analysis
Authors
Anon George
H. B. Barathi Ganesh
M. Anand Kumar
K. P. Soman
Copyright Year
2019
Book
Computer Aided Intervention and Diagnostics in Clinical and Medical Images

Print ISBN: 978-3-030-04060-4

Electronic ISBN: 978-3-030-04061-1

Copyright Year: 2019

DOI
https://doi.org/10.1007/978-3-030-04061-1_27