Skip to main content
Top

2015 | OriginalPaper | Chapter

Tractography-Driven Groupwise Multi-scale Parcellation of the Cortex

Authors : Sarah Parisot, Salim Arslan, Jonathan Passerat-Palmbach, William M. Wells III, Daniel Rueckert

Published in: Information Processing in Medical Imaging

Publisher: Springer International Publishing

Activate our intelligent search to find suitable subject content or patents.

search-config
loading …

Abstract

The analysis of the connectome of the human brain provides key insight into the brain’s organisation and function, and its evolution in disease or ageing. Parcellation of the cortical surface into distinct regions in terms of structural connectivity is an essential step that can enable such analysis. The estimation of a stable connectome across a population of healthy subjects requires the estimation of a groupwise parcellation that can capture the variability of the connectome across the population. This problem has solely been addressed in the literature via averaging of connectivity profiles or finding correspondences between individual parcellations a posteriori. In this paper, we propose a groupwise parcellation method of the cortex based on diffusion MR images (dMRI). We borrow ideas from the area of cosegmentation in computer vision and directly estimate a consistent parcellation across different subjects and scales through a spectral clustering approach. The parcellation is driven by the tractography connectivity profiles, and information between subjects and across scales. Promising qualitative and quantitative results on a sizeable data-set demonstrate the strong potential of the method.

Dont have a licence yet? Then find out more about our products and how to get one now:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Footnotes
1
Human Connectome Project Database, https://​db.​humanconnectome.​org/​.
 
Literature
1.
go back to reference Achanta, R., Shaji, A., Smith, K., Lucchi, A., Fua, P., Susstrunk, S.: Slic superpixels compared to state-of-the-art superpixel methods. IEEE Trans. Pattern Anal. 34, 2274–2282 (2012)CrossRef Achanta, R., Shaji, A., Smith, K., Lucchi, A., Fua, P., Susstrunk, S.: Slic superpixels compared to state-of-the-art superpixel methods. IEEE Trans. Pattern Anal. 34, 2274–2282 (2012)CrossRef
2.
go back to reference Anwander, A., Tittgemeyer, M., von Cramon, D.Y., Friederici, A.D., Knösche, T.R.: Connectivity-based parcellation of Broca’s area. Cereb. Cortex 17(4), 816–825 (2007)CrossRef Anwander, A., Tittgemeyer, M., von Cramon, D.Y., Friederici, A.D., Knösche, T.R.: Connectivity-based parcellation of Broca’s area. Cereb. Cortex 17(4), 816–825 (2007)CrossRef
3.
go back to reference Behrens, T., Berg, H.J., Jbabdi, S., Rushworth, M., Woolrich, M.: Probabilistic diffusion tractography with multiple fibre orientations: what can we gain? NeuroImage 34(1), 144–155 (2007)CrossRef Behrens, T., Berg, H.J., Jbabdi, S., Rushworth, M., Woolrich, M.: Probabilistic diffusion tractography with multiple fibre orientations: what can we gain? NeuroImage 34(1), 144–155 (2007)CrossRef
4.
go back to reference Blumensath, T., Jbabdi, S., Glasser, M.F., Van Essen, D.C., Ugurbil, K., Behrens, T.E., Smith, S.M.: Spatially constrained hierarchical parcellation of the brain with resting-state fmri. NeuroImage 76, 313–324 (2013)CrossRef Blumensath, T., Jbabdi, S., Glasser, M.F., Van Essen, D.C., Ugurbil, K., Behrens, T.E., Smith, S.M.: Spatially constrained hierarchical parcellation of the brain with resting-state fmri. NeuroImage 76, 313–324 (2013)CrossRef
5.
go back to reference Clarkson, M.J., Malone, I.B., Modat, M., Leung, K.K., Ryan, N., Alexander, D.C., Fox, N.C., Ourselin, S.: A framework for using diffusion weighted imaging to improve cortical parcellation. In: Jiang, T., Navab, N., Pluim, J.P.W., Viergever, M.A. (eds.) MICCAI 2010, Part I. LNCS, vol. 6361, pp. 534–541. Springer, Heidelberg (2010) CrossRef Clarkson, M.J., Malone, I.B., Modat, M., Leung, K.K., Ryan, N., Alexander, D.C., Fox, N.C., Ourselin, S.: A framework for using diffusion weighted imaging to improve cortical parcellation. In: Jiang, T., Navab, N., Pluim, J.P.W., Viergever, M.A. (eds.) MICCAI 2010, Part I. LNCS, vol. 6361, pp. 534–541. Springer, Heidelberg (2010) CrossRef
6.
go back to reference Cour, T., Bnzit, F., Shi, J.: Spectral segmentation with multiscale graph decomposition. In: CVPR (2), pp. 1124–1131. IEEE Computer Society (2005) Cour, T., Bnzit, F., Shi, J.: Spectral segmentation with multiscale graph decomposition. In: CVPR (2), pp. 1124–1131. IEEE Computer Society (2005)
7.
go back to reference Craddock, R.C., James, G.A., Holtzheimer, P.E., Hu, X.P., Mayberg, H.S.: A whole brain fmri atlas generated via spatially constrained spectral clustering. Hum. Brain Mapp. 33, 1914–1928 (2012)CrossRef Craddock, R.C., James, G.A., Holtzheimer, P.E., Hu, X.P., Mayberg, H.S.: A whole brain fmri atlas generated via spatially constrained spectral clustering. Hum. Brain Mapp. 33, 1914–1928 (2012)CrossRef
8.
go back to reference Destrieux, C., Fischl, B., Dale, A., Halgren, E.: Automatic parcellation of human cortical gyri and sulci using standard anatomical nomenclature. NeuroImage 53(1), 1–15 (2010)CrossRef Destrieux, C., Fischl, B., Dale, A., Halgren, E.: Automatic parcellation of human cortical gyri and sulci using standard anatomical nomenclature. NeuroImage 53(1), 1–15 (2010)CrossRef
9.
go back to reference Glasser, M.F., Sotiropoulos, S.N., Wilson, J.A., Coalson, T.S., Fischl, B., Andersson, J.L., Xu, J., Jbabdi, S., Webster, M., Polimeni, J.R., Essen, D.C.V., Jenkinson, M.: The minimal preprocessing pipelines for the human connectome project. NeuroImage 80, 105–124 (2013)CrossRef Glasser, M.F., Sotiropoulos, S.N., Wilson, J.A., Coalson, T.S., Fischl, B., Andersson, J.L., Xu, J., Jbabdi, S., Webster, M., Polimeni, J.R., Essen, D.C.V., Jenkinson, M.: The minimal preprocessing pipelines for the human connectome project. NeuroImage 80, 105–124 (2013)CrossRef
10.
go back to reference Jbabdi, S., Woolrich, M.W., Behrens, T.E.: Multiple-subjects connectivity-based parcellation using hierarchical dirichlet process mixture models. NeuroImage 44, 373–384 (2009)CrossRef Jbabdi, S., Woolrich, M.W., Behrens, T.E.: Multiple-subjects connectivity-based parcellation using hierarchical dirichlet process mixture models. NeuroImage 44, 373–384 (2009)CrossRef
11.
go back to reference Jbabdi, S., Sotiropoulos, S.N., Savio, A.M., Graa, M., Behrens, T.E.J.: Model-based analysis of multishell diffusion MR data for tractography: how to get over fitting problems. Magn. Reson. Med. 68(6), 1846–1855 (2012)CrossRef Jbabdi, S., Sotiropoulos, S.N., Savio, A.M., Graa, M., Behrens, T.E.J.: Model-based analysis of multishell diffusion MR data for tractography: how to get over fitting problems. Magn. Reson. Med. 68(6), 1846–1855 (2012)CrossRef
12.
go back to reference Kim, E., Li, H., Huang, X.: A hierarchical image clustering cosegmentation framework. In: CVPR, pp. 686–693. IEEE (2012) Kim, E., Li, H., Huang, X.: A hierarchical image clustering cosegmentation framework. In: CVPR, pp. 686–693. IEEE (2012)
13.
go back to reference Moreno-Dominguez, D., Anwander, A., Knösche, T.R.: A hierarchical method for whole-brain connectivity-based parcellation. Hum. Brain Mapp. 35, 5000–5025 (2014)CrossRef Moreno-Dominguez, D., Anwander, A., Knösche, T.R.: A hierarchical method for whole-brain connectivity-based parcellation. Hum. Brain Mapp. 35, 5000–5025 (2014)CrossRef
14.
go back to reference Peyré, G., Cohen, L.D.: Surface segmentation using geodesic centroidal tesselation. In: 3DPVT, pp. 995–1002. IEEE Computer Society (2004) Peyré, G., Cohen, L.D.: Surface segmentation using geodesic centroidal tesselation. In: 3DPVT, pp. 995–1002. IEEE Computer Society (2004)
15.
go back to reference Roca, P., Rivière, D., Guevara, P., Poupon, C., Mangin, J.-F.: Tractography-based parcellation of the cortex using a spatially-informed dimension reduction of the connectivity matrix. In: Yang, G.-Z., Hawkes, D., Rueckert, D., Noble, A., Taylor, C. (eds.) MICCAI 2009, Part I. LNCS, vol. 5761, pp. 935–942. Springer, Heidelberg (2009) CrossRef Roca, P., Rivière, D., Guevara, P., Poupon, C., Mangin, J.-F.: Tractography-based parcellation of the cortex using a spatially-informed dimension reduction of the connectivity matrix. In: Yang, G.-Z., Hawkes, D., Rueckert, D., Noble, A., Taylor, C. (eds.) MICCAI 2009, Part I. LNCS, vol. 5761, pp. 935–942. Springer, Heidelberg (2009) CrossRef
16.
go back to reference Roca, P., Tucholka, A., Rivière, D., Guevara, P., Poupon, C., Mangin, J.-F.: Inter-subject connectivity-based parcellation of a patch of cerebral cortex. In: Jiang, T., Navab, N., Pluim, J.P.W., Viergever, M.A. (eds.) MICCAI 2010, Part II. LNCS, vol. 6362, pp. 347–354. Springer, Heidelberg (2010) CrossRef Roca, P., Tucholka, A., Rivière, D., Guevara, P., Poupon, C., Mangin, J.-F.: Inter-subject connectivity-based parcellation of a patch of cerebral cortex. In: Jiang, T., Navab, N., Pluim, J.P.W., Viergever, M.A. (eds.) MICCAI 2010, Part II. LNCS, vol. 6362, pp. 347–354. Springer, Heidelberg (2010) CrossRef
17.
go back to reference Sporns, O.: The human connectome: a complex network. Ann. NY Acad. Sci. 1224, 109–125 (2011)CrossRef Sporns, O.: The human connectome: a complex network. Ann. NY Acad. Sci. 1224, 109–125 (2011)CrossRef
18.
go back to reference Tzourio-Mazoyer, N., Landeau, B., Papathanassiou, D., Crivello, F., Etard, O., Delcroix, N., Mazoyer, B., Joliot, M.: Automated anatomical labeling of activations in spm using a macroscopic anatomical parcellation of the mni mri single-subject brain. NeuroImage 15(1), 273–289 (2002)CrossRef Tzourio-Mazoyer, N., Landeau, B., Papathanassiou, D., Crivello, F., Etard, O., Delcroix, N., Mazoyer, B., Joliot, M.: Automated anatomical labeling of activations in spm using a macroscopic anatomical parcellation of the mni mri single-subject brain. NeuroImage 15(1), 273–289 (2002)CrossRef
19.
go back to reference Yu, S.X., Shi, J.: Multiclass spectral clustering. In: ICCV (2). IEEE (2003) Yu, S.X., Shi, J.: Multiclass spectral clustering. In: ICCV (2). IEEE (2003)
20.
go back to reference Yu, S.X., Shi, J.: Segmentation given partial grouping constraints. IEEE Trans. Pattern Anal. 26(2), 173–183 (2004)CrossRef Yu, S.X., Shi, J.: Segmentation given partial grouping constraints. IEEE Trans. Pattern Anal. 26(2), 173–183 (2004)CrossRef
Metadata
Title
Tractography-Driven Groupwise Multi-scale Parcellation of the Cortex
Authors
Sarah Parisot
Salim Arslan
Jonathan Passerat-Palmbach
William M. Wells III
Daniel Rueckert
Copyright Year
2015
DOI
https://doi.org/10.1007/978-3-319-19992-4_47

Premium Partner