Skip to main content
Top

2016 | OriginalPaper | Chapter

Using Spatiotemporal Information to Integrate Heterogeneous Biodiversity Semantic Data

Authors : Flor Amanqui, Ruben Verborgh, Erik Mannens, Rik Van de Walle, Dilvan Moreira

Published in: Web Engineering

Publisher: Springer International Publishing

Activate our intelligent search to find suitable subject content or patents.

search-config
loading …

Abstract

Biodiversity is essential to life on Earth and motivates many efforts to collect data about species. These data are collected in different places and published in different formats. Researchers use it to extract new knowledge about living things, but it is difficult to retrieve, combine and integrate data sources from different places. This work will investigate how to integrate biodiversity information from heterogeneous sources using Semantic Web technologies. Its main objective is to propose an architecture to link biodiversity data using mainly their spatiotemporal dimension, effectively search these linked data sets and test them using real use cases, defined with the help of biodiversity experts. It is also an important objective to propose a suitable provenance model that captures not only data origin but also temporal information. This architecture will be tested on a set of representative data from important Brazilian institutions that are involved in studies of biodiversity.

Dont have a licence yet? Then find out more about our products and how to get one now:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literature
1.
go back to reference Magnusson, W., Braga-Neto, R., Pezzini, F., Baccaro, F., Bergallo, H., Penha, J., de Jesus Rodrigues, D., Verdade, L.M., Lima, A., Albernaz, A.L., Hero, J.M., Lawson, B., Castilho, C., Drucker, D., Franklin, E., Medonca, F., Costa, F., Galdino, G., Castley, G., Zuanon, J., do Vale, J., dos Santos, J.L.C., Luizao, R., Cintra, R., Barbosa, R.I., Lisboa, A., Koblitz, R., da Cunha, C.N., Pontes, A.R.M.: Biodiversity and Integrated Environmental Monitoring. Program for Planned Biodiversity and Ecosystem Research (PPBio) (2013) Magnusson, W., Braga-Neto, R., Pezzini, F., Baccaro, F., Bergallo, H., Penha, J., de Jesus Rodrigues, D., Verdade, L.M., Lima, A., Albernaz, A.L., Hero, J.M., Lawson, B., Castilho, C., Drucker, D., Franklin, E., Medonca, F., Costa, F., Galdino, G., Castley, G., Zuanon, J., do Vale, J., dos Santos, J.L.C., Luizao, R., Cintra, R., Barbosa, R.I., Lisboa, A., Koblitz, R., da Cunha, C.N., Pontes, A.R.M.: Biodiversity and Integrated Environmental Monitoring. Program for Planned Biodiversity and Ecosystem Research (PPBio) (2013)
2.
go back to reference Amanqui, F.K., Serique, K.J., Cardoso, S.D., Santos, J.L., Albuquerque, A., Moreira, D.A.: Improving biodiversity data retrieval through semantic search and ontologies. In: 2014 IEEE/WIC/ACM International Joint Conferences on Web Intelligence (WI) and Intelligent Agent Technologies (IAT), vol. 1, pp. 274–281, August 2014 Amanqui, F.K., Serique, K.J., Cardoso, S.D., Santos, J.L., Albuquerque, A., Moreira, D.A.: Improving biodiversity data retrieval through semantic search and ontologies. In: 2014 IEEE/WIC/ACM International Joint Conferences on Web Intelligence (WI) and Intelligent Agent Technologies (IAT), vol. 1, pp. 274–281, August 2014
3.
go back to reference Cardoso, S.D., Amanqui, F.K., Serique, K.J., dos Santos, J.L., Moreira, D.A.: SWI: a semantic web interactive gazetteer to support linked open data. Future Gener. Comput. Syst. 54, 389–398 (2015)CrossRef Cardoso, S.D., Amanqui, F.K., Serique, K.J., dos Santos, J.L., Moreira, D.A.: SWI: a semantic web interactive gazetteer to support linked open data. Future Gener. Comput. Syst. 54, 389–398 (2015)CrossRef
4.
go back to reference Kauppinen, T., de Espindola, G.M., Jones, J., Sanchez, A., Gräler, B., Bartoschek, T.: Linked brazilian amazon rainforest data. Semant. Web J. 5(2), 151–155 (2014) Kauppinen, T., de Espindola, G.M., Jones, J., Sanchez, A., Gräler, B., Bartoschek, T.: Linked brazilian amazon rainforest data. Semant. Web J. 5(2), 151–155 (2014)
5.
go back to reference Fontes, S.G., Stanzani, S.L., Correa, P.L.P.: A data mining framework for primary biodiversity data analysis. In: Rocha, A., Correia, A.M., Costanzo, S., Reis, L.P. (eds.) New Contributions in Information Systems and Technologies: Volume 1. AISC, vol. 353, pp. 813–821. Springer, Heidelberg (2015)CrossRef Fontes, S.G., Stanzani, S.L., Correa, P.L.P.: A data mining framework for primary biodiversity data analysis. In: Rocha, A., Correia, A.M., Costanzo, S., Reis, L.P. (eds.) New Contributions in Information Systems and Technologies: Volume 1. AISC, vol. 353, pp. 813–821. Springer, Heidelberg (2015)CrossRef
6.
go back to reference Rocca-Serra, P., Walls, R., Parnell, J., Gallery, R., Zheng, J., Sansone, S.A., Gonzalez-Beltran, A.: Modeling a microbial community and biodiversity assay with OBO foundry ontologies: the interoperability gains of a modular approach. Database 2015 (2015) Rocca-Serra, P., Walls, R., Parnell, J., Gallery, R., Zheng, J., Sansone, S.A., Gonzalez-Beltran, A.: Modeling a microbial community and biodiversity assay with OBO foundry ontologies: the interoperability gains of a modular approach. Database 2015 (2015)
7.
go back to reference Wieczorek, J., Bloom, D., Guralnick, R., Blum, S., Döring, M., Giovanni, R., Robertson, T., Vieglais, D.: Darwin core: an evolving community-developed biodiversity data standard. PLoS ONE 7(1), 1–8 (2012)CrossRef Wieczorek, J., Bloom, D., Guralnick, R., Blum, S., Döring, M., Giovanni, R., Robertson, T., Vieglais, D.: Darwin core: an evolving community-developed biodiversity data standard. PLoS ONE 7(1), 1–8 (2012)CrossRef
8.
go back to reference Omitola, T., Gibbins, N., Shadbolt, N.: Provenance in linked data integration (2010) Omitola, T., Gibbins, N., Shadbolt, N.: Provenance in linked data integration (2010)
9.
go back to reference Zhao, J., Klyne, G., Shotton, D.: Provenance and linked data in biological data webs. In: Bizer, C., Heath, T., Idehen, K., Berners-Lee, T. (eds.) Proceedings of the WWW 2008 Workshop on Linked Data on the Web (LDOW 2008) (2008) Zhao, J., Klyne, G., Shotton, D.: Provenance and linked data in biological data webs. In: Bizer, C., Heath, T., Idehen, K., Berners-Lee, T. (eds.) Proceedings of the WWW 2008 Workshop on Linked Data on the Web (LDOW 2008) (2008)
10.
go back to reference Wang, S., Padmanabhan, A., Myers, J.D., Tang, W., Liu, Y.: Towards provenance aware geographic information systems. In: Proceedings of the 16th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, GIS 2008, p. 70:170:4. ACM, New York (2008) Wang, S., Padmanabhan, A., Myers, J.D., Tang, W., Liu, Y.: Towards provenance aware geographic information systems. In: Proceedings of the 16th ACM SIGSPATIAL International Conference on Advances in Geographic Information Systems, GIS 2008, p. 70:170:4. ACM, New York (2008)
11.
go back to reference Beserra Sousa, R., Cintra Cugler, D., Gonzales Malaverri, J., Bauzer Medeiros, C.: A provenance-based approach to manage long term preservation of scientic data. In: 2014 IEEE 30th International Conference on Data Engineering Workshops (ICDEW), pp. 162–133, March 2014 Beserra Sousa, R., Cintra Cugler, D., Gonzales Malaverri, J., Bauzer Medeiros, C.: A provenance-based approach to manage long term preservation of scientic data. In: 2014 IEEE 30th International Conference on Data Engineering Workshops (ICDEW), pp. 162–133, March 2014
12.
go back to reference Moreau, L., Freire, J., Futrelle, J., McGrath, R.E., Myers, J., Paulson, P.: The open provenance model: an overview. In: Freire, J., Koop, D., Moreau, L. (eds.) IPAW 2008. LNCS, vol. 5272, pp. 323–326. Springer, Heidelberg (2008)CrossRef Moreau, L., Freire, J., Futrelle, J., McGrath, R.E., Myers, J., Paulson, P.: The open provenance model: an overview. In: Freire, J., Koop, D., Moreau, L. (eds.) IPAW 2008. LNCS, vol. 5272, pp. 323–326. Springer, Heidelberg (2008)CrossRef
Metadata
Title
Using Spatiotemporal Information to Integrate Heterogeneous Biodiversity Semantic Data
Authors
Flor Amanqui
Ruben Verborgh
Erik Mannens
Rik Van de Walle
Dilvan Moreira
Copyright Year
2016
DOI
https://doi.org/10.1007/978-3-319-38791-8_41

Premium Partner