Skip to main content
Top
Published in: Designs, Codes and Cryptography 2/2016

01-08-2016

Codes over \(F_{4}+vF_4\) and some DNA applications

Authors: Aysegul Bayram, Elif Segah Oztas, Irfan Siap

Published in: Designs, Codes and Cryptography | Issue 2/2016

Login to get access

Activate our intelligent search to find suitable subject content or patents.

search-config
loading …

Abstract

In this work, we study the structure of linear, constacyclic and cyclic codes over the ring \(R=F_{4}[v]/(v^{2}-v)\) and establish relations to codes over \( F_{4}\) by defining a Gray map between R and \(F_{4}^{2}\) where \(F_4\) is the field with 4 elements. Constacyclic codes over R are shown to be principal ideals. Further, we study skew constacyclic codes over R. The structure of all skew constacyclic codes is completely determined. Furthermore, we introduce reversible codes which provide a rich source for DNA codes. We conclude the paper by obtaining some DNA codes over R that attain the Griesmer bound.
Literature
1.
go back to reference Abualrub T., Aydin N., Seneviratne P.: Theta-cyclic codes cver \(F_2 + vF_2\). Aust. J. Comb. 54, 115–126 (2012). Abualrub T., Aydin N., Seneviratne P.: Theta-cyclic codes cver \(F_2 + vF_2\). Aust. J. Comb. 54, 115–126 (2012).
2.
go back to reference Adleman L.: Molecular computation of solutions to combinatorial problems. Science 266, 1021–1024 (1994). Adleman L.: Molecular computation of solutions to combinatorial problems. Science 266, 1021–1024 (1994).
3.
go back to reference Bayram A., Siap I.: Structure of codes over the ring \(Z_{3}[v]/\langle v^{3}-v\rangle \). Appl. Algebra Eng. Commun. Comput. 24, 369–386 (2013). Bayram A., Siap I.: Structure of codes over the ring \(Z_{3}[v]/\langle v^{3}-v\rangle \). Appl. Algebra Eng. Commun. Comput. 24, 369–386 (2013).
4.
go back to reference Bayram A., Siap I.: Cyclic and constacyclic codes over a non-chain ring. J. Algebra Comb. Discret. Struct. Appl. 1, 1–13 (2014). Bayram A., Siap I.: Cyclic and constacyclic codes over a non-chain ring. J. Algebra Comb. Discret. Struct. Appl. 1, 1–13 (2014).
5.
go back to reference Bayram A., Oztas E.S., Siap I.: Codes over a non chain ring with some applications. Lecture Notes in Computer Science, vol. 8592, pp. 106–110 (2014). Bayram A., Oztas E.S., Siap I.: Codes over a non chain ring with some applications. Lecture Notes in Computer Science, vol. 8592, pp. 106–110 (2014).
6.
go back to reference Boucher D., Geiselmann W., Ulmer F.: Skew cyclic codes. Appl. Algebr. Eng. Commun. 18, 379–389 (2007) Boucher D., Geiselmann W., Ulmer F.: Skew cyclic codes. Appl. Algebr. Eng. Commun. 18, 379–389 (2007)
7.
go back to reference Boucher D., Sole P., Ulmer F.: Skew constacyclic codes over galois rings. Adv. Math. Commun. 2, 273–292 (2008). Boucher D., Sole P., Ulmer F.: Skew constacyclic codes over galois rings. Adv. Math. Commun. 2, 273–292 (2008).
8.
go back to reference Gursoy F., Siap I., Yildiz B.: Construction of skew cylic codes over \(F_{q} + vF_{q}\). Adv. Math. Commun. 8, 313–322 (2014). Gursoy F., Siap I., Yildiz B.: Construction of skew cylic codes over \(F_{q} + vF_{q}\). Adv. Math. Commun. 8, 313–322 (2014).
9.
go back to reference Hammons A.R., Kumar Jr. P.V., Calderbank J.A., Sloane N.J.A., Sole P.: The \(Z_4\)-linearity of Kerdock, Preparata, Goethals, and related codes. IEEE Trans. Inf. Theory 40, 301–319 (1994). Hammons A.R., Kumar Jr. P.V., Calderbank J.A., Sloane N.J.A., Sole P.: The \(Z_4\)-linearity of Kerdock, Preparata, Goethals, and related codes. IEEE Trans. Inf. Theory 40, 301–319 (1994).
10.
go back to reference Horimoto H., Shiromoto K.: MDS codes over finite quasi-Frobenius rings, preprint. Horimoto H., Shiromoto K.: MDS codes over finite quasi-Frobenius rings, preprint.
11.
go back to reference Jitman S., Ling S., Udomkavanich P.: Skew constacyclic codes over finite chain rings. Adv. Math. Commun. 6, 39–63 (2012). Jitman S., Ling S., Udomkavanich P.: Skew constacyclic codes over finite chain rings. Adv. Math. Commun. 6, 39–63 (2012).
12.
go back to reference Marathe A., Condon A.N., Corn R.M.: On combinatorial DNA word design. J. Comput. Biol. 8, 201–219 (2001). Marathe A., Condon A.N., Corn R.M.: On combinatorial DNA word design. J. Comput. Biol. 8, 201–219 (2001).
13.
go back to reference Massey J.L.: Reversible codes. Inf. Control 7, 369–380 (1964). Massey J.L.: Reversible codes. Inf. Control 7, 369–380 (1964).
14.
go back to reference Oztas E.S., Siap I.: Lifted polynomials over \(F_{16}\) and their applications to DNA codes. Filomat 27, 459–466 (2013). Oztas E.S., Siap I.: Lifted polynomials over \(F_{16}\) and their applications to DNA codes. Filomat 27, 459–466 (2013).
15.
go back to reference Shiromoto K., Storme L.: A Griesmer bound for linear codes over finite quasi-Frobenius rings. Discret. Appl. Math. 128, 263274 (2003). Shiromoto K., Storme L.: A Griesmer bound for linear codes over finite quasi-Frobenius rings. Discret. Appl. Math. 128, 263274 (2003).
16.
go back to reference Siap I., Abualrub T., Aydin N., Seneviratne P.: Skew cyclic codes of arbitrary length. Int. J. Inf. Coding Theory 2, 10–20 (2011). Siap I., Abualrub T., Aydin N., Seneviratne P.: Skew cyclic codes of arbitrary length. Int. J. Inf. Coding Theory 2, 10–20 (2011).
17.
go back to reference Siap I., Abualrub T., Ghrayeb A.: Cyclic DNA codes over the ring \(F_2[u]/(u^2-1)\) based on the deletion distance. J. Franklin Ins. 346, 731–740 (2006). Siap I., Abualrub T., Ghrayeb A.: Cyclic DNA codes over the ring \(F_2[u]/(u^2-1)\) based on the deletion distance. J. Franklin Ins. 346, 731–740 (2006).
18.
go back to reference Abualrub T., Ghrayeb A., Zeng X.N.: Consruction of cyclic codes over \(F_4\) for DNA computing. J. Franklin Ins. 343, 448–457 (2006). Abualrub T., Ghrayeb A., Zeng X.N.: Consruction of cyclic codes over \(F_4\) for DNA computing. J. Franklin Ins. 343, 448–457 (2006).
19.
go back to reference Xu X.Q., Zhu S.X.: Skew cyclic codes over the ring \(F_4+vF_4\). J. Hefei Univ. Technol. Nat. Sci. 34, 1429–1432 (2011). Xu X.Q., Zhu S.X.: Skew cyclic codes over the ring \(F_4+vF_4\). J. Hefei Univ. Technol. Nat. Sci. 34, 1429–1432 (2011).
20.
go back to reference Yamamoto M., Kashiwamura S., Ohuchi A.: DNA memory with \(16.8\)M addresses. Lecture Notes in Computer Science, DNA Computing, vol. 4868, pp. 99–108 (2008). Yamamoto M., Kashiwamura S., Ohuchi A.: DNA memory with \(16.8\)M addresses. Lecture Notes in Computer Science, DNA Computing, vol. 4868, pp. 99–108 (2008).
21.
go back to reference Yildiz B., Karadeniz S.: Linear codes over \(F_{2} + uF_{2} +vF_{2} + uvF_{2}\). Des. Codes Cryptogr. 54, 61–81 (2010). Yildiz B., Karadeniz S.: Linear codes over \(F_{2} + uF_{2} +vF_{2} + uvF_{2}\). Des. Codes Cryptogr. 54, 61–81 (2010).
22.
go back to reference Yildiz B., Siap I.: Cyclic codes over \(F_2[u]/(u^4 - 1)\) and applications to DNA codes. Comput. Math. Appl. 63, 1169–1176 (2012). Yildiz B., Siap I.: Cyclic codes over \(F_2[u]/(u^4 - 1)\) and applications to DNA codes. Comput. Math. Appl. 63, 1169–1176 (2012).
23.
go back to reference Zhu S., Wang Y.: A class of constacyclic codes over \(F_{p}+vF_{p}\) and their Gray image. Discret. Math. Theory 311, 2677–2682 (2011). Zhu S., Wang Y.: A class of constacyclic codes over \(F_{p}+vF_{p}\) and their Gray image. Discret. Math. Theory 311, 2677–2682 (2011).
24.
go back to reference Zhu S., Wang Y., Shi M.: Some result on cyclic codes over \(F_{2}+vF_{2}\). IEEE Trans. Inf. Theory 56, 1680–1684 (2010). Zhu S., Wang Y., Shi M.: Some result on cyclic codes over \(F_{2}+vF_{2}\). IEEE Trans. Inf. Theory 56, 1680–1684 (2010).
Metadata
Title
Codes over and some DNA applications
Authors
Aysegul Bayram
Elif Segah Oztas
Irfan Siap
Publication date
01-08-2016
Publisher
Springer US
Published in
Designs, Codes and Cryptography / Issue 2/2016
Print ISSN: 0925-1022
Electronic ISSN: 1573-7586
DOI
https://doi.org/10.1007/s10623-015-0100-8

Other articles of this Issue 2/2016

Designs, Codes and Cryptography 2/2016 Go to the issue

Premium Partner