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2019 | OriginalPaper | Chapter

Continuous-Time Simulation of Epidemic Processes on Dynamic Interaction Networks

Authors : Rehan Ahmad, Kevin S. Xu

Published in: Social, Cultural, and Behavioral Modeling

Publisher: Springer International Publishing

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Abstract

Contagious processes on networks, such as spread of disease through physical proximity or information diffusion over social media, are continuous-time processes that depend upon the pattern of interactions between the individuals in the network. Continuous-time stochastic epidemic models are a natural fit for modeling the dynamics of such processes. However, prior work on such continuous-time models doesn’t consider the dynamics of the underlying interaction network which involves addition and removal of edges over time. Instead, researchers have typically simulated these processes using discrete-time approximations, in which one has to trade off between high simulation accuracy and short computation time. In this paper, we incorporate continuous-time network dynamics (addition and removal of edges) into continuous-time epidemic simulations. We propose a rejection-sampling based approach coupled with the well-known Gillespie algorithm that enables exact simulation of the continuous-time epidemic process. Our proposed approach gives exact results, and the computation time required for simulation is reduced as compared to discrete-time approximations of comparable accuracy.

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Footnotes
1
Simulating a continuous-time epidemic model using a discrete-time approximation is also sometimes referred to as rejection sampling, e.g. in [6, 12]. We refrain from such terminology in this paper as our proposed rejection sampling approach is exact.
 
Literature
3.
go back to reference Allen, L.J.: A primer on stochastic epidemic models: formulation, numerical simulation, and analysis. Infect. Dis. Model. 2(2), 128–142 (2017) Allen, L.J.: A primer on stochastic epidemic models: formulation, numerical simulation, and analysis. Infect. Dis. Model. 2(2), 128–142 (2017)
5.
go back to reference Efron, B., Tibshirani, R.J.: An Introduction to the Bootstrap. CRC Press, Boca Raton (1994) Efron, B., Tibshirani, R.J.: An Introduction to the Bootstrap. CRC Press, Boca Raton (1994)
6.
go back to reference Fennell, P.G., Melnik, S., Gleeson, J.P.: Limitations of discrete-time approaches to continuous-time contagion dynamics. Phys. Rev. E 94, 052125 (2016)CrossRef Fennell, P.G., Melnik, S., Gleeson, J.P.: Limitations of discrete-time approaches to continuous-time contagion dynamics. Phys. Rev. E 94, 052125 (2016)CrossRef
7.
go back to reference Fournet, J., Barrat, A.: Contact patterns among high school students. PLoS One 9(9), e107878 (2014)CrossRef Fournet, J., Barrat, A.: Contact patterns among high school students. PLoS One 9(9), e107878 (2014)CrossRef
8.
go back to reference Gillespie, D.T.: Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 81(25), 2340–2361 (1977)CrossRef Gillespie, D.T.: Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 81(25), 2340–2361 (1977)CrossRef
9.
go back to reference Holme, P.: Modern temporal network theory: a colloquium. Eur. Phys. J. B 88(9), 234 (2015)CrossRef Holme, P.: Modern temporal network theory: a colloquium. Eur. Phys. J. B 88(9), 234 (2015)CrossRef
11.
go back to reference Stehlé, J., et al.: Simulation of an SEIR infectious disease model on the dynamic contact network of conference attendees. BMC Med. 9(1), 87 (2011)CrossRef Stehlé, J., et al.: Simulation of an SEIR infectious disease model on the dynamic contact network of conference attendees. BMC Med. 9(1), 87 (2011)CrossRef
12.
go back to reference Vestergaard, C.L., Génois, M.: Temporal Gillespie algorithm: fast simulation of contagion processes on time-varying networks. PLOS Comput. Biol. 11(10), 1–28 (2015)CrossRef Vestergaard, C.L., Génois, M.: Temporal Gillespie algorithm: fast simulation of contagion processes on time-varying networks. PLOS Comput. Biol. 11(10), 1–28 (2015)CrossRef
13.
go back to reference Volz, E.M., Miller, J.C., Galvani, A., Ancel Meyers, L.: Effects of heterogeneous and clustered contact patterns on infectious disease dynamics. PLOS Comput. Biol. 7(6), 1–13 (2011)MathSciNetCrossRef Volz, E.M., Miller, J.C., Galvani, A., Ancel Meyers, L.: Effects of heterogeneous and clustered contact patterns on infectious disease dynamics. PLOS Comput. Biol. 7(6), 1–13 (2011)MathSciNetCrossRef
Metadata
Title
Continuous-Time Simulation of Epidemic Processes on Dynamic Interaction Networks
Authors
Rehan Ahmad
Kevin S. Xu
Copyright Year
2019
DOI
https://doi.org/10.1007/978-3-030-21741-9_15

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