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Published in: Lifetime Data Analysis 3/2013

01-07-2013

Evaluating incremental values from new predictors with net reclassification improvement in survival analysis

Authors: Yingye Zheng, Layla Parast, Tianxi Cai, Marshall Brown

Published in: Lifetime Data Analysis | Issue 3/2013

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Abstract

Developing individualized prediction rules for disease risk and prognosis has played a key role in modern medicine. When new genomic or biological markers become available to assist in risk prediction, it is essential to assess the improvement in clinical usefulness of the new markers over existing routine variables. Net reclassification improvement (NRI) has been proposed to assess improvement in risk reclassification in the context of comparing two risk models and the concept has been quickly adopted in medical journals (Pencina et al., Stat Med 27:157–172, 2008). We propose both nonparametric and semiparametric procedures for calculating NRI as a function of a future prediction time \(t\) with a censored failure time outcome. The proposed methods accommodate covariate-dependent censoring, therefore providing more robust and sometimes more efficient procedures compared with the existing nonparametric-based estimators (Pencina et al., Stat Med 30:11–21, 2011; Uno et al., Comparing risk scoring systems beyond the roc paradigm in survival analysis, 2009). Simulation results indicate that the proposed procedures perform well in finite samples. We illustrate these procedures by evaluating a new risk model for predicting the onset of cardiovascular disease.

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Appendix
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Literature
go back to reference Cook N (2007) Use and misuse of the receiver operating characteristic curve in risk prediction. Circulation 115:928CrossRef Cook N (2007) Use and misuse of the receiver operating characteristic curve in risk prediction. Circulation 115:928CrossRef
go back to reference Cook N, Buring J, Ridker P (2006) The effect of including c-reactive protein in cardiovascular risk prediction models for women. Annals of Internal Medicine 145:21CrossRef Cook N, Buring J, Ridker P (2006) The effect of including c-reactive protein in cardiovascular risk prediction models for women. Annals of Internal Medicine 145:21CrossRef
go back to reference Cui J (2009) Overview of risk prediction models in cardiovascular disease research. Ann Epidemiol 19:711–717CrossRef Cui J (2009) Overview of risk prediction models in cardiovascular disease research. Ann Epidemiol 19:711–717CrossRef
go back to reference Du Y, Akritas M (2002) Uniform strong representation of the conditional Kaplan–Meier process. Math Methods Stat 11:152–182MathSciNetMATH Du Y, Akritas M (2002) Uniform strong representation of the conditional Kaplan–Meier process. Math Methods Stat 11:152–182MathSciNetMATH
go back to reference Efron B, Tibshirani R (1997) Improvements on cross-validation: the.632+ bootstrap method. J Am Stat Assoc 92(438):548–560MathSciNetMATH Efron B, Tibshirani R (1997) Improvements on cross-validation: the.632+ bootstrap method. J Am Stat Assoc 92(438):548–560MathSciNetMATH
go back to reference Gail M, Brinton L, Byar D, Corle D, Green S, Schairer C, Mulvihill J (1989) Projecting individualized probabilities of developing breast cancer for white females who are being examined annually. J Natl Cancer Inst (JNCI) 81:1879CrossRef Gail M, Brinton L, Byar D, Corle D, Green S, Schairer C, Mulvihill J (1989) Projecting individualized probabilities of developing breast cancer for white females who are being examined annually. J Natl Cancer Inst (JNCI) 81:1879CrossRef
go back to reference Gu W, Pepe M (2009) Measures to summarize and compare the predictive capacity of markers. Int J Biostat 5:27MathSciNet Gu W, Pepe M (2009) Measures to summarize and compare the predictive capacity of markers. Int J Biostat 5:27MathSciNet
go back to reference Hemann B, Bimson W, Taylor A (2007) The framingham risk score: an appraisal of its benefits and limitations. Am Heart Hosp J 5:91–96CrossRef Hemann B, Bimson W, Taylor A (2007) The framingham risk score: an appraisal of its benefits and limitations. Am Heart Hosp J 5:91–96CrossRef
go back to reference Hjort N (1992) On inference in parametric survival data models. Int Stat Rev 60(3):355–387MATHCrossRef Hjort N (1992) On inference in parametric survival data models. Int Stat Rev 60(3):355–387MATHCrossRef
go back to reference Kannel W, Feinleib M, McNamara P, Garrison R, Castelli W (1979) An investigation of coronary heart disease in families. Am J Epidemiol 110:281 Kannel W, Feinleib M, McNamara P, Garrison R, Castelli W (1979) An investigation of coronary heart disease in families. Am J Epidemiol 110:281
go back to reference Khot U, Khot M, Bajzer C, Sapp S, Ohman E, Brener S, Ellis S, Lincoff A, Topol E (2003) Prevalence of conventional risk factors in patients with coronary heart disease. JAMA 290:898–904CrossRef Khot U, Khot M, Bajzer C, Sapp S, Ohman E, Brener S, Ellis S, Lincoff A, Topol E (2003) Prevalence of conventional risk factors in patients with coronary heart disease. JAMA 290:898–904CrossRef
go back to reference Lloyd-Jones D (2010) Cardiovascular risk prediction. Circulation 121:1768–1777CrossRef Lloyd-Jones D (2010) Cardiovascular risk prediction. Circulation 121:1768–1777CrossRef
go back to reference Pencina M, D’Agostino R Sr (2011) Extensions of net reclassification improvement calculations to measure usefulness of new biomarkers. Stat Med 30:11–21MathSciNetCrossRef Pencina M, D’Agostino R Sr (2011) Extensions of net reclassification improvement calculations to measure usefulness of new biomarkers. Stat Med 30:11–21MathSciNetCrossRef
go back to reference Pencina M, D’Agostino R Sr, D’Agostino R Jr (2008) Evaluating the added predictive ability of a new marker: from area under the ROC curve to reclassification and beyond. Stat Med 27:157–172MathSciNetCrossRef Pencina M, D’Agostino R Sr, D’Agostino R Jr (2008) Evaluating the added predictive ability of a new marker: from area under the ROC curve to reclassification and beyond. Stat Med 27:157–172MathSciNetCrossRef
go back to reference Pollard D (1990) Empirical processes: theory and applications. Institute of Mathematical Statistics, HaywardMATH Pollard D (1990) Empirical processes: theory and applications. Institute of Mathematical Statistics, HaywardMATH
go back to reference Tian L, Cai T, Goetghebeur E, Wei L (2007) Model evaluation based on the sampling distribution of estimated absolute prediction error. Biometrika 94:297–311MathSciNetMATHCrossRef Tian L, Cai T, Goetghebeur E, Wei L (2007) Model evaluation based on the sampling distribution of estimated absolute prediction error. Biometrika 94:297–311MathSciNetMATHCrossRef
go back to reference Uno H, Cai T, Tian L, Wei L (2007) Evaluating prediction rules for t-year survivors with censored regression models. J Am Stat Assoc 102:527–537MathSciNetMATHCrossRef Uno H, Cai T, Tian L, Wei L (2007) Evaluating prediction rules for t-year survivors with censored regression models. J Am Stat Assoc 102:527–537MathSciNetMATHCrossRef
go back to reference Uno H, Tian L, Cai T, Kohane I, Wei L (2009) Comparing risk scoring systems beyond the roc paradigm in survival analysis. Harvard University Biostatistics Working Paper Series, p 107 Uno H, Tian L, Cai T, Kohane I, Wei L (2009) Comparing risk scoring systems beyond the roc paradigm in survival analysis. Harvard University Biostatistics Working Paper Series, p 107
go back to reference Wilson P, D’Agostino R, Levy D, Belanger A, Silbershatz H, Kannel W (1998) Prediction of coronary heart disease using risk factor categories. Circulation 97:1837CrossRef Wilson P, D’Agostino R, Levy D, Belanger A, Silbershatz H, Kannel W (1998) Prediction of coronary heart disease using risk factor categories. Circulation 97:1837CrossRef
go back to reference Zheng Y, Cai T, Pepe M, Levy W (2008) Time-dependent predictive values of prognostic biomarkers with failure time outcome. J Am Stat Assoc 103:362–368MathSciNetMATHCrossRef Zheng Y, Cai T, Pepe M, Levy W (2008) Time-dependent predictive values of prognostic biomarkers with failure time outcome. J Am Stat Assoc 103:362–368MathSciNetMATHCrossRef
Metadata
Title
Evaluating incremental values from new predictors with net reclassification improvement in survival analysis
Authors
Yingye Zheng
Layla Parast
Tianxi Cai
Marshall Brown
Publication date
01-07-2013
Publisher
Springer US
Published in
Lifetime Data Analysis / Issue 3/2013
Print ISSN: 1380-7870
Electronic ISSN: 1572-9249
DOI
https://doi.org/10.1007/s10985-012-9239-z

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