Skip to main content
Top

2020 | OriginalPaper | Chapter

Function vs. Taxonomy: Further Reading from Fungal Mitochondrial ATP Synthases

Authors : Victory Fedotovskaya, Michael Sadovsky, Anna Kolesnikova, Tatiana Shpagina, Yulia Putintseva

Published in: Bioinformatics and Biomedical Engineering

Publisher: Springer International Publishing

Activate our intelligent search to find suitable subject content or patents.

search-config
loading …

Abstract

We studied the relations between triplet composition of the family of mitochondrial atp6, atp8 and atp9 genes, their function, and taxonomy of the bearers. The points in 64-dimensional metric space corresponding to genes have been clustered. It was found the points are separated into three clusters corresponding to those genes. 223 mitochondrial genomes have been enrolled into the database.

Dont have a licence yet? Then find out more about our products and how to get one now:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literature
1.
go back to reference Molla, M., Delcher, A., Sunyaev, S., Cantor, C., Kasif, S.: Triplet repeat length bias and variation in the human transcriptome. Proc. Nat. Acad. Sci. 106(40), 17095–17100 (2009)CrossRef Molla, M., Delcher, A., Sunyaev, S., Cantor, C., Kasif, S.: Triplet repeat length bias and variation in the human transcriptome. Proc. Nat. Acad. Sci. 106(40), 17095–17100 (2009)CrossRef
2.
go back to reference Provata, A., Nicolis, C., Nicolis, G.: DNA viewed as an out-of-equilibrium structure. Phys. Rev. E 89, 052105 (2014)CrossRef Provata, A., Nicolis, C., Nicolis, G.: DNA viewed as an out-of-equilibrium structure. Phys. Rev. E 89, 052105 (2014)CrossRef
3.
go back to reference Qin, L., et al.: Survey and analysis of simple sequence repeats (SSRs) present in the genomes of plant viroids. FEBS Open Bio 4(1), 185–189 (2014)CrossRef Qin, L., et al.: Survey and analysis of simple sequence repeats (SSRs) present in the genomes of plant viroids. FEBS Open Bio 4(1), 185–189 (2014)CrossRef
4.
go back to reference Moghaddasi, H., Khalifeh, K., Darooneh, A.H.: Distinguishing functional DNA words; a method for measuring clustering levels. Sci. Rep. 7, 41543 (2017) CrossRef Moghaddasi, H., Khalifeh, K., Darooneh, A.H.: Distinguishing functional DNA words; a method for measuring clustering levels. Sci. Rep. 7, 41543 (2017) CrossRef
5.
go back to reference Bank, C., Hietpas, R.T., Jensen, J.D., Bolon, D.N.: A systematic survey of an intragenic epistatic landscape. Mol. Biol. Evol. 32(1), 229–238 (2015)CrossRef Bank, C., Hietpas, R.T., Jensen, J.D., Bolon, D.N.: A systematic survey of an intragenic epistatic landscape. Mol. Biol. Evol. 32(1), 229–238 (2015)CrossRef
6.
go back to reference Albrecht-Buehler, G.: Fractal genome sequences. Gene 498(1), 20–27 (2012)CrossRef Albrecht-Buehler, G.: Fractal genome sequences. Gene 498(1), 20–27 (2012)CrossRef
7.
go back to reference Esser, C., et al.: A genome phylogeny for mitochondria among \(\alpha \)-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes. Mol. Biol. Evol. 21(9), 1643–1660 (2004)CrossRef Esser, C., et al.: A genome phylogeny for mitochondria among \(\alpha \)-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes. Mol. Biol. Evol. 21(9), 1643–1660 (2004)CrossRef
8.
go back to reference Davoodian, N., et al.: A global view of Gyroporus: molecular phylogenetics, diversity patterns, and new species. Mycologia 110, 985–995 (2018)CrossRef Davoodian, N., et al.: A global view of Gyroporus: molecular phylogenetics, diversity patterns, and new species. Mycologia 110, 985–995 (2018)CrossRef
9.
go back to reference Nadimi, M., Daubois, L., Hijri, M.: Mitochondrial comparative genomics and phylogenetic signal assessment of mtDNA among arbuscular mycorrhizal fungi. Mol. Phylogenet. Evol. 98, 74–83 (2016)CrossRef Nadimi, M., Daubois, L., Hijri, M.: Mitochondrial comparative genomics and phylogenetic signal assessment of mtDNA among arbuscular mycorrhizal fungi. Mol. Phylogenet. Evol. 98, 74–83 (2016)CrossRef
10.
go back to reference Fukunaga, K.: Introduction to Statistical Pattern Recognition. Academic Press, London (1990) Fukunaga, K.: Introduction to Statistical Pattern Recognition. Academic Press, London (1990)
11.
go back to reference Gorban, A.N., Zinovyev, A.Y.: Fast and user-friendly non-linear principal manifold learning by method of elastic maps. In: IEEE International Conference on Data Science and Advanced Analytics, DSAA 2015, Campus des Cordeliers, Paris, France, 19–21 October 2015, pp. 1–9 (2015) Gorban, A.N., Zinovyev, A.Y.: Fast and user-friendly non-linear principal manifold learning by method of elastic maps. In: IEEE International Conference on Data Science and Advanced Analytics, DSAA 2015, Campus des Cordeliers, Paris, France, 19–21 October 2015, pp. 1–9 (2015)
12.
go back to reference Gorban, A.N., Zinovyev, A.: Principal manifolds and graphs in practice: from molecular biology to dynamical systems. Int. J. Neural Syst. 20(03), 219–232 (2010). PMID: 20556849CrossRef Gorban, A.N., Zinovyev, A.: Principal manifolds and graphs in practice: from molecular biology to dynamical systems. Int. J. Neural Syst. 20(03), 219–232 (2010). PMID: 20556849CrossRef
14.
Metadata
Title
Function vs. Taxonomy: Further Reading from Fungal Mitochondrial ATP Synthases
Authors
Victory Fedotovskaya
Michael Sadovsky
Anna Kolesnikova
Tatiana Shpagina
Yulia Putintseva
Copyright Year
2020
DOI
https://doi.org/10.1007/978-3-030-45385-5_39

Premium Partner