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2013 | OriginalPaper | Chapter

Molecular Dynamics Study of Oligomer-Membrane Complexes with Biomedical Relevance

Authors : André F. Ferreira, Patrícia Alves, Jorge F. Coelho, Maria H. Gil, Pedro N. Simões

Published in: Characterization and Development of Biosystems and Biomaterials

Publisher: Springer Berlin Heidelberg

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Abstract

The use of liposomes as drug delivery systems (DDS) is well known. However, the stability of liposomes (shelf stability in bloodstream) for this kind of application is an issue. One way to address this problem is to develop polymer-liposome complexes to provide an improved stability as well as better selectivity characteristics. This work reports a molecular dynamics (MD) study on polymer-membrane complexes with biomedical interest. A bilayer membrane was used to mimic the liposome surface, whereas the targeted isopropylacrylamide based polymers were replaced by representative oligomers. The MD simulations were performed by using the united-atoms 53A6 GROMOS force-field, with the GROMACS 4.5.4 package in a Linux cluster. Two oligomers were tested, and their interaction with a bilayer surface was analyzed. In order to understand how the oligomer-membrane complex reacts under different thermal environments, the systems were simulated at several temperatures. It was found that the studied oligomers presented distinct effects in the bilayer. The inclusion of cholesterol at the end of isopropylacrylamide chain enabled the permeation of the oligomer and promoted the bilayer stability. On the other hand, both oligomers showed the common tendency of promoting the penetration of water molecules to the bilayer center.

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Literature
2.
go back to reference Berendsen, H.J.C., Postma, J.P.M., Gunsteren, W., Hermans, J.: Interaction models for water in relation to protein hydration. Intermol. Forces 11(1), 331–342 (1981) Berendsen, H.J.C., Postma, J.P.M., Gunsteren, W., Hermans, J.: Interaction models for water in relation to protein hydration. Intermol. Forces 11(1), 331–342 (1981)
3.
go back to reference Berendsen, H.J.C., Postma, J.P.M., van Gunsteren, W.F., DiNola, A., Haak, J.R.: Molecular dynamics with coupling to an external bath. J. Chem. Phys. 81(8), 3684 (1984). doi:10.1063/1.448118 Berendsen, H.J.C., Postma, J.P.M., van Gunsteren, W.F., DiNola, A., Haak, J.R.: Molecular dynamics with coupling to an external bath. J. Chem. Phys. 81(8), 3684 (1984). doi:10.​1063/​1.​448118
4.
go back to reference Betre, H., Liu, W., Zalutsky, M.R., Chilkoti, A., Kraus, V.B., Setton, L.A.: A thermally responsive biopolymer for intra-articular drug delivery. J. Controlled Release 115(2), 175–182 (2006). DOI:10.1016/j.jconrel.2006.07.022 Betre, H., Liu, W., Zalutsky, M.R., Chilkoti, A., Kraus, V.B., Setton, L.A.: A thermally responsive biopolymer for intra-articular drug delivery. J. Controlled Release 115(2), 175–182 (2006). DOI:10.​1016/​j.​jconrel.​2006.​07.​022
6.
go back to reference Darden, T., York, D., Pedersen, L.: Particle mesh Ewald: an Nlog(N) method for Ewald sums in large systems. J. Chem. Phys. 98(12), 10089 (1993). doi:10.1063/1.464397 Darden, T., York, D., Pedersen, L.: Particle mesh Ewald: an Nlog(N) method for Ewald sums in large systems. J. Chem. Phys. 98(12), 10089 (1993). doi:10.​1063/​1.​464397
7.
go back to reference Desai, S., Perkins, J., Harrison, B.S., Sankar, J.: Understanding release kinetics of biopolymer drug delivery microcapsules for biomedical applications. Mater. Sci. Eng., B 168(1–3), 127–131 (2010). doi:10.1016/j.mseb.2009.11.006 Desai, S., Perkins, J., Harrison, B.S., Sankar, J.: Understanding release kinetics of biopolymer drug delivery microcapsules for biomedical applications. Mater. Sci. Eng., B 168(1–3), 127–131 (2010). doi:10.​1016/​j.​mseb.​2009.​11.​006
8.
go back to reference Douliez, J.P., Ferrarini, A., Dufourc, E.J.: On the relationship between C-C and C-D order parameters and its use for studying the conformation of lipid acyl chains in biomembranes. J. Chem. Phys. 109(6), 2513 (1998). doi:10.1063/1.476823 Douliez, J.P., Ferrarini, A., Dufourc, E.J.: On the relationship between C-C and C-D order parameters and its use for studying the conformation of lipid acyl chains in biomembranes. J. Chem. Phys. 109(6), 2513 (1998). doi:10.​1063/​1.​476823
9.
go back to reference Essmann, U., Perera, L., Berkowitz, M.L., Darden, T., Lee, H., Pedersen, L.G.: A smooth particle mesh Ewald method. J. Chem. Phys. 103(19), 8577 (1995). doi:10.1063/1.470117 Essmann, U., Perera, L., Berkowitz, M.L., Darden, T., Lee, H., Pedersen, L.G.: A smooth particle mesh Ewald method. J. Chem. Phys. 103(19), 8577 (1995). doi:10.​1063/​1.​470117
11.
go back to reference Hess, B.: P-LINCS: a parallel linear constraint solver for molecular simulation. J. Chem. Theory Comput. 4(1), 116–122 (2008). doi:10.1021/ct700200b Hess, B.: P-LINCS: a parallel linear constraint solver for molecular simulation. J. Chem. Theory Comput. 4(1), 116–122 (2008). doi:10.​1021/​ct700200b
13.
go back to reference Hess, B., Kutzner, C., van der Spoel, D., Lindahl, E.: GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation. J. Chem. Theory Comput. 4(3), 435–447 (2008). doi:10.1021/ct700301q Hess, B., Kutzner, C., van der Spoel, D., Lindahl, E.: GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation. J. Chem. Theory Comput. 4(3), 435–447 (2008). doi:10.​1021/​ct700301q
15.
go back to reference Holland, J.W., Hui, C., Cullis, P.R., Madden, T.D.: Poly(ethylene glycol)-lipid conjugates regulate the calcium-induced fusion of liposomes composed of phosphatidylethanolamine and phosphatidylserine. Biochemistry 35(8), 2618–2624 (1996). doi:10.1021/bi952000v Holland, J.W., Hui, C., Cullis, P.R., Madden, T.D.: Poly(ethylene glycol)-lipid conjugates regulate the calcium-induced fusion of liposomes composed of phosphatidylethanolamine and phosphatidylserine. Biochemistry 35(8), 2618–2624 (1996). doi:10.​1021/​bi952000v
16.
go back to reference Kucerka, N., Liu, Y., Chu, N., Petrache, H.I., Tristram-Nagle, S., Nagle, J.F.: Structure of fully hydrated fluid phase DMPC and DLPC lipid bilayers using X-ray scattering from oriented multilamellar arrays and from unilamellar vesicles. Biophys. J. 88(4), 2626–2637 (2005). doi:10.1529/biophysj.104.056606 Kucerka, N., Liu, Y., Chu, N., Petrache, H.I., Tristram-Nagle, S., Nagle, J.F.: Structure of fully hydrated fluid phase DMPC and DLPC lipid bilayers using X-ray scattering from oriented multilamellar arrays and from unilamellar vesicles. Biophys. J. 88(4), 2626–2637 (2005). doi:10.​1529/​biophysj.​104.​056606
18.
go back to reference Kukol, A.: Lipid models for united-atom molecular dynamics simulations of proteins. J. Chem. Theory Comput. 5(3), 615–626 (2009). doi:10.1021/ct8003468 Kukol, A.: Lipid models for united-atom molecular dynamics simulations of proteins. J. Chem. Theory Comput. 5(3), 615–626 (2009). doi:10.​1021/​ct8003468
19.
go back to reference Lee, S.M., Chen, H., Dettmer, C.M., O’Halloran, T.V., Nguyen, S.T.: Polymer-caged lipsomes: a pH-responsive delivery system with high stability. J. Am. Chem. Soc. 129(49), 15096–15097 (2007). doi:10.1021/ja070748i Lee, S.M., Chen, H., Dettmer, C.M., O’Halloran, T.V., Nguyen, S.T.: Polymer-caged lipsomes: a pH-responsive delivery system with high stability. J. Am. Chem. Soc. 129(49), 15096–15097 (2007). doi:10.​1021/​ja070748i
20.
go back to reference Levkin, P.A., Svec, F., Frechet, J.M.J.: Porous polymer coatings: a versatile approach to superhydrophobic surfaces. Adv. Funct. Mater. 19(12), 1993–1998 (2009). doi:10.1002/adfm.200801916 Levkin, P.A., Svec, F., Frechet, J.M.J.: Porous polymer coatings: a versatile approach to superhydrophobic surfaces. Adv. Funct. Mater. 19(12), 1993–1998 (2009). doi:10.​1002/​adfm.​200801916
21.
go back to reference Lewis, B.A., Engelman, D.M.: Lipid bilayer thickness varies linearly with acyl chain length in fluid phosphatidylcholine vesicles. J. Mol. Biol. 166(2), 211–217 (1983). doi:10.1016/S0022-2836(83)80007-2 Lewis, B.A., Engelman, D.M.: Lipid bilayer thickness varies linearly with acyl chain length in fluid phosphatidylcholine vesicles. J. Mol. Biol. 166(2), 211–217 (1983). doi:10.​1016/​S0022-2836(83)80007-2
22.
go back to reference Lindahl, E., Hess, B., van der Spoel, D.: GROMACS 3.0: a package for molecular simulation and trajectory analysis. J. Mol. Model. 7, 306–317 (2001). doi:10.1007/s008940100045 Lindahl, E., Hess, B., van der Spoel, D.: GROMACS 3.0: a package for molecular simulation and trajectory analysis. J. Mol. Model. 7, 306–317 (2001). doi:10.​1007/​s008940100045
23.
go back to reference Mabrey, S., Sturtevant, J.M.: Investigation of phase transitions of lipids and lipid mixtures by sensitivity differential scanning calorimetry. Proc. Natl. Acad. Sci. U S A 73(11), 3862–3866 (1976)CrossRef Mabrey, S., Sturtevant, J.M.: Investigation of phase transitions of lipids and lipid mixtures by sensitivity differential scanning calorimetry. Proc. Natl. Acad. Sci. U S A 73(11), 3862–3866 (1976)CrossRef
24.
go back to reference Madhavan, N., Jones, C.W., Weck, M.: Rational approach to polymer-supported catalysts: synergy between catalytic reaction mechanism and polymer design. Acc. Chem. Res. 41(9), 1153–1165 (2008). doi:10.1021/ar800081y Madhavan, N., Jones, C.W., Weck, M.: Rational approach to polymer-supported catalysts: synergy between catalytic reaction mechanism and polymer design. Acc. Chem. Res. 41(9), 1153–1165 (2008). doi:10.​1021/​ar800081y
25.
go back to reference Malde, A.K., Zuo, L., Breeze, M., Stroet, M., Poger, D., Nair, P.C., Oostenbrink, C., Mark, A.E.: An Automated force field topology builder (ATB) and repository: version 1.0. J. Chem. Theory Comput. 7(12), 4026–4037 (2011). doi:10.1021/ct200196m Malde, A.K., Zuo, L., Breeze, M., Stroet, M., Poger, D., Nair, P.C., Oostenbrink, C., Mark, A.E.: An Automated force field topology builder (ATB) and repository: version 1.0. J. Chem. Theory Comput. 7(12), 4026–4037 (2011). doi:10.​1021/​ct200196m
26.
go back to reference Miyamoto, S., Kollman, P.A.: Settle: an analytical version of the SHAKE and RATTLE algorithm for rigid water models. J. Comput. Chem. 13(8), 952–962 (1992). doi:10.1002/jcc.540130805 Miyamoto, S., Kollman, P.A.: Settle: an analytical version of the SHAKE and RATTLE algorithm for rigid water models. J. Comput. Chem. 13(8), 952–962 (1992). doi:10.​1002/​jcc.​540130805
28.
go back to reference Oostenbrink, C., Soares, T.A., van Der Vegt, N.F.A., van Gunsteren, W.F.: Validation of the 53A6 GROMOS force field. Eur. Biophys. J. 34(4), 273–284 (2005). doi:10.1007/s00249-004-0448-6 Oostenbrink, C., Soares, T.A., van Der Vegt, N.F.A., van Gunsteren, W.F.: Validation of the 53A6 GROMOS force field. Eur. Biophys. J. 34(4), 273–284 (2005). doi:10.​1007/​s00249-004-0448-6
29.
go back to reference Oostenbrink, C., Villa, A., Mark, A.E., van Gunsteren, W.F.: A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6. J. Comput. Chem. 25(13), 1656–1676 (2004). doi:10.1002/jcc.20090 Oostenbrink, C., Villa, A., Mark, A.E., van Gunsteren, W.F.: A biomolecular force field based on the free enthalpy of hydration and solvation: the GROMOS force-field parameter sets 53A5 and 53A6. J. Comput. Chem. 25(13), 1656–1676 (2004). doi:10.​1002/​jcc.​20090
30.
go back to reference Paasonen, L., Romberg, B., Storm, G., Yliperttula, M., Urtti, A., Hennink, W.E.: Temperature-sensitive poly(N-(2-hydroxypropyl)methacrylamide mono/dilactate)-coated liposomes for triggered contents release. Bioconjugate Chem. 18(6), 2131–2136 (2007). doi:10.1021/bc700245p Paasonen, L., Romberg, B., Storm, G., Yliperttula, M., Urtti, A., Hennink, W.E.: Temperature-sensitive poly(N-(2-hydroxypropyl)methacrylamide mono/dilactate)-coated liposomes for triggered contents release. Bioconjugate Chem. 18(6), 2131–2136 (2007). doi:10.​1021/​bc700245p
31.
go back to reference Petrache, H.I., Tristram-Nagle, S., Nagle, J.F.: Fluid phase structure of EPC and DMPC bilayers. Chem. Phys. Lipids 95(1), 83–94 (1998)CrossRef Petrache, H.I., Tristram-Nagle, S., Nagle, J.F.: Fluid phase structure of EPC and DMPC bilayers. Chem. Phys. Lipids 95(1), 83–94 (1998)CrossRef
32.
go back to reference Schüttelkopf, A.W., van Aalten, D.M.F.: PRODRG: a tool for high-throughput crystallography of protein-ligand complexes. Acta Crystallogr. D 60, 1355–1363 (2004). doi:10.1107/S0907444904011679 Schüttelkopf, A.W., van Aalten, D.M.F.: PRODRG: a tool for high-throughput crystallography of protein-ligand complexes. Acta Crystallogr. D 60, 1355–1363 (2004). doi:10.​1107/​S090744490401167​9
33.
go back to reference Shukla, R., Murali, V., Bhansali, A.: Flip chip CPU package technology at Intel: a technology and manufacturing overview. In: 1999 Proceedings. 49th Electronic Components and Technology Conference (Cat. No. 99CH36299), pp. 945–949 (1999). doi:10.1109/ECTC.1999.776299 Shukla, R., Murali, V., Bhansali, A.: Flip chip CPU package technology at Intel: a technology and manufacturing overview. In: 1999 Proceedings. 49th Electronic Components and Technology Conference (Cat. No. 99CH36299), pp. 945–949 (1999). doi:10.​1109/​ECTC.​1999.​776299
34.
go back to reference Spoel, D.V.D., Lindahl, E., Hess, B., Buuren, A.R.V., Apol, E., Meulenhoff, P.J., Tieleman, D.P., Sijbers, A.L.T.M., Feenstra, K.A., Drunen, R.V., Berendsen, H.J.C.: Gromacs User Manual Version 4.5. University of Groningen, Groningen (2010) Spoel, D.V.D., Lindahl, E., Hess, B., Buuren, A.R.V., Apol, E., Meulenhoff, P.J., Tieleman, D.P., Sijbers, A.L.T.M., Feenstra, K.A., Drunen, R.V., Berendsen, H.J.C.: Gromacs User Manual Version 4.5. University of Groningen, Groningen (2010)
37.
go back to reference Ulrich, A.S.: Biophysical aspects of using liposomes as delivery vehicles. Biosci. Rep. 22(2), 129–150 (2002)CrossRef Ulrich, A.S.: Biophysical aspects of using liposomes as delivery vehicles. Biosci. Rep. 22(2), 129–150 (2002)CrossRef
38.
go back to reference Van Der Spoel, D., Lindahl, E., Hess, B., Groenhof, G., Mark, A.E., Berendsen, H.J.C.: GROMACS: fast, flexible, and free. J. Comput. Chem. 26(16), 1701–1718 (2005). doi:10.1002/jcc.20291 Van Der Spoel, D., Lindahl, E., Hess, B., Groenhof, G., Mark, A.E., Berendsen, H.J.C.: GROMACS: fast, flexible, and free. J. Comput. Chem. 26(16), 1701–1718 (2005). doi:10.​1002/​jcc.​20291
39.
go back to reference Wu, C., Zhou, S.: Volume phase transition of swollen gels: discontinuous or continuous? Macromolecules 30(3), 574–576 (1997). doi:10.1021/ma960499a Wu, C., Zhou, S.: Volume phase transition of swollen gels: discontinuous or continuous? Macromolecules 30(3), 574–576 (1997). doi:10.​1021/​ma960499a
Metadata
Title
Molecular Dynamics Study of Oligomer-Membrane Complexes with Biomedical Relevance
Authors
André F. Ferreira
Patrícia Alves
Jorge F. Coelho
Maria H. Gil
Pedro N. Simões
Copyright Year
2013
Publisher
Springer Berlin Heidelberg
DOI
https://doi.org/10.1007/978-3-642-31470-4_4

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