Skip to main content
Top

2024 | OriginalPaper | Chapter

RPUC: Semi-supervised 3D Biomedical Image Segmentation Through Rectified Pyramid Unsupervised Consistency

Authors : Xiaogen Zhou, Zhiqiang Li, Tong Tong

Published in: Neural Information Processing

Publisher: Springer Nature Singapore

Activate our intelligent search to find suitable subject content or patents.

search-config
loading …

Abstract

Deep learning models have demonstrated remarkable performance in various biomedical image segmentation tasks. However, their reliance on a large amount of labeled data for training poses challenges as acquiring well-annotated data is expensive and time-consuming. To address this issue, semi-supervised learning (SSL) has emerged as a potential solution to leverage abundant unlabeled data. In this paper, we propose a simple yet effective consistency regularization scheme called Rectified Pyramid Unsupervised Consistency (RPUC) for semi-supervised 3D biomedical image segmentation. Our RPUC adopts a pyramid-like structure by incorporating three segmentation networks. To fully exploit the available unlabeled data, we introduce a novel pyramid unsupervised consistency (PUC) loss, which enforces consistency among the outputs of the three segmentation models and facilitates the transfer of cyclic knowledge. Additionally, we perturb the inputs of the three networks with varying ratios of Gaussian noise to enhance the consistency of unlabeled data outputs. Furthermore, three pseudo labels are generated from the outputs of the three segmentation networks, providing additional supervision during training. Experimental results demonstrate that our proposed RPUC achieves state-of-the-art performance in semi-supervised segmentation on two publicly available 3D biomedical image datasets.

Dont have a licence yet? Then find out more about our products and how to get one now:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literature
1.
go back to reference Chen, X., Yuan, Y., Zeng, G., Wang, J.: Semi-supervised semantic segmentation with cross pseudo supervision. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 2613–2622 (2021) Chen, X., Yuan, Y., Zeng, G., Wang, J.: Semi-supervised semantic segmentation with cross pseudo supervision. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 2613–2622 (2021)
3.
go back to reference Gao, F., et al.: Segmentation only uses sparse annotations: unified weakly and semi-supervised learning in medical images. Med. Image Anal. 80, 102515 (2022)CrossRef Gao, F., et al.: Segmentation only uses sparse annotations: unified weakly and semi-supervised learning in medical images. Med. Image Anal. 80, 102515 (2022)CrossRef
5.
go back to reference Lin, X., et al.: A super-resolution guided network for improving automated thyroid nodule segmentation. Comput. Methods Programs Biomed. 227, 107186 (2022)CrossRef Lin, X., et al.: A super-resolution guided network for improving automated thyroid nodule segmentation. Comput. Methods Programs Biomed. 227, 107186 (2022)CrossRef
6.
go back to reference Luo, X., Chen, J., Song, T., Wang, G.: Semi-supervised medical image segmentation through dual-task consistency. In: Proceedings of the AAAI Conference on Artificial Intelligence, vol. 35, pp. 8801–8809 (2021) Luo, X., Chen, J., Song, T., Wang, G.: Semi-supervised medical image segmentation through dual-task consistency. In: Proceedings of the AAAI Conference on Artificial Intelligence, vol. 35, pp. 8801–8809 (2021)
7.
go back to reference Menze, B.H., et al.: The multimodal brain tumor image segmentation benchmark (Brats). IEEE Trans. Med. Imaging 34(10), 1993–2024 (2014)CrossRef Menze, B.H., et al.: The multimodal brain tumor image segmentation benchmark (Brats). IEEE Trans. Med. Imaging 34(10), 1993–2024 (2014)CrossRef
8.
go back to reference Milletari, F., Navab, N., Ahmadi, S.A.: V-net: fully convolutional neural networks for volumetric medical image segmentation. In: 2016 Fourth International Conference on 3D Vision (3DV), pp. 565–571. IEEE (2016) Milletari, F., Navab, N., Ahmadi, S.A.: V-net: fully convolutional neural networks for volumetric medical image segmentation. In: 2016 Fourth International Conference on 3D Vision (3DV), pp. 565–571. IEEE (2016)
9.
go back to reference Nie, X., et al.: N-net: a novel dense fully convolutional neural network for thyroid nodule segmentation. Front. Neurosci. 16, 872601 (2022)CrossRef Nie, X., et al.: N-net: a novel dense fully convolutional neural network for thyroid nodule segmentation. Front. Neurosci. 16, 872601 (2022)CrossRef
10.
go back to reference Njoku, A., et al.: Left atrial volume predicts atrial fibrillation recurrence after radiofrequency ablation: a meta-analysis. EP Europace 20(1), 33–42 (2018)CrossRef Njoku, A., et al.: Left atrial volume predicts atrial fibrillation recurrence after radiofrequency ablation: a meta-analysis. EP Europace 20(1), 33–42 (2018)CrossRef
11.
go back to reference Tarvainen, A., Valpola, H.: Mean teachers are better role models: weight-averaged consistency targets improve semi-supervised deep learning results. In: Advances in Neural Information Processing Systems, vol. 30 (2017) Tarvainen, A., Valpola, H.: Mean teachers are better role models: weight-averaged consistency targets improve semi-supervised deep learning results. In: Advances in Neural Information Processing Systems, vol. 30 (2017)
12.
go back to reference Vu, T.H., Jain, H., Bucher, M., Cord, M., Pérez, P.: Advent: adversarial entropy minimization for domain adaptation in semantic segmentation. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 2517–2526 (2019) Vu, T.H., Jain, H., Bucher, M., Cord, M., Pérez, P.: Advent: adversarial entropy minimization for domain adaptation in semantic segmentation. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 2517–2526 (2019)
13.
go back to reference Xiong, Z., et al.: A global benchmark of algorithms for segmenting the left atrium from late gadolinium-enhanced cardiac magnetic resonance imaging. Med. Image Anal. 67, 101832 (2021)CrossRef Xiong, Z., et al.: A global benchmark of algorithms for segmenting the left atrium from late gadolinium-enhanced cardiac magnetic resonance imaging. Med. Image Anal. 67, 101832 (2021)CrossRef
15.
go back to reference Zhang, Y., Yang, L., Chen, J., Fredericksen, M., Hughes, D.P., Chen, D.Z.: Deep adversarial networks for biomedical image segmentation utilizing unannotated images. In: Descoteaux, M., Maier-Hein, L., Franz, A., Jannin, P., Collins, D.L., Duchesne, S. (eds.) MICCAI 2017. LNCS, vol. 10435, pp. 408–416. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-66179-7_47CrossRef Zhang, Y., Yang, L., Chen, J., Fredericksen, M., Hughes, D.P., Chen, D.Z.: Deep adversarial networks for biomedical image segmentation utilizing unannotated images. In: Descoteaux, M., Maier-Hein, L., Franz, A., Jannin, P., Collins, D.L., Duchesne, S. (eds.) MICCAI 2017. LNCS, vol. 10435, pp. 408–416. Springer, Cham (2017). https://​doi.​org/​10.​1007/​978-3-319-66179-7_​47CrossRef
16.
go back to reference Zheng, H., Zhou, X., Li, J., Gao, Q., Tong, T.: White blood cell segmentation based on visual attention mechanism and model fitting. In: 2020 International Conference on Computer Engineering and Intelligent Control (ICCEIC), pp. 47–50. IEEE (2020) Zheng, H., Zhou, X., Li, J., Gao, Q., Tong, T.: White blood cell segmentation based on visual attention mechanism and model fitting. In: 2020 International Conference on Computer Engineering and Intelligent Control (ICCEIC), pp. 47–50. IEEE (2020)
17.
go back to reference Zhou, X., Li, Z., Tong, T.: DTSC-net: semi-supervised 3d biomedical image segmentation through dual-teacher simplified consistency. In: 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pp. 1429–1434. IEEE (2022) Zhou, X., Li, Z., Tong, T.: DTSC-net: semi-supervised 3d biomedical image segmentation through dual-teacher simplified consistency. In: 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pp. 1429–1434. IEEE (2022)
19.
go back to reference Zhou, X., et al.: CUSS-net: a cascaded unsupervised-based strategy and supervised network for biomedical image diagnosis and segmentation. IEEE J. Biomed. Health Inform. (2023) Zhou, X., et al.: CUSS-net: a cascaded unsupervised-based strategy and supervised network for biomedical image diagnosis and segmentation. IEEE J. Biomed. Health Inform. (2023)
20.
go back to reference Zhou, X., et al.: Leukocyte image segmentation based on adaptive histogram thresholding and contour detection. Curr. Bioinform. 15(3), 187–195 (2020)MathSciNetCrossRef Zhou, X., et al.: Leukocyte image segmentation based on adaptive histogram thresholding and contour detection. Curr. Bioinform. 15(3), 187–195 (2020)MathSciNetCrossRef
21.
go back to reference Zhou, X., et al.: H-net: a dual-decoder enhanced FCNN for automated biomedical image diagnosis. Inf. Sci. 613, 575–590 (2022)CrossRef Zhou, X., et al.: H-net: a dual-decoder enhanced FCNN for automated biomedical image diagnosis. Inf. Sci. 613, 575–590 (2022)CrossRef
22.
go back to reference Zhou, X., Tong, T., Zhong, Z., Fan, H., Li, Z.: Saliency-CCE: exploiting colour contextual extractor and saliency-based biomedical image segmentation. Compute. Biol. Med. 106551 (2023) Zhou, X., Tong, T., Zhong, Z., Fan, H., Li, Z.: Saliency-CCE: exploiting colour contextual extractor and saliency-based biomedical image segmentation. Compute. Biol. Med. 106551 (2023)
23.
go back to reference Zhou, X., Wang, C., Li, Z., Zhang, F.: Adaptive histogram thresholding-based leukocyte image segmentation. In: Pan, J.-S., Li, J., Tsai, P.-W., Jain, L.C. (eds.) Advances in Intelligent Information Hiding and Multimedia Signal Processing. SIST, vol. 157, pp. 451–459. Springer, Singapore (2020). https://doi.org/10.1007/978-981-13-9710-3_47CrossRef Zhou, X., Wang, C., Li, Z., Zhang, F.: Adaptive histogram thresholding-based leukocyte image segmentation. In: Pan, J.-S., Li, J., Tsai, P.-W., Jain, L.C. (eds.) Advances in Intelligent Information Hiding and Multimedia Signal Processing. SIST, vol. 157, pp. 451–459. Springer, Singapore (2020). https://​doi.​org/​10.​1007/​978-981-13-9710-3_​47CrossRef
Metadata
Title
RPUC: Semi-supervised 3D Biomedical Image Segmentation Through Rectified Pyramid Unsupervised Consistency
Authors
Xiaogen Zhou
Zhiqiang Li
Tong Tong
Copyright Year
2024
Publisher
Springer Nature Singapore
DOI
https://doi.org/10.1007/978-981-99-8067-3_25

Premium Partner