Skip to main content
Top

2016 | OriginalPaper | Chapter

Chemical Sensors and Information Fusion in Physarum

Authors : James G. H. Whiting, Ben De Lacy Costello, Andrew Adamatzky

Published in: Advances in Physarum Machines

Publisher: Springer International Publishing

Activate our intelligent search to find suitable subject content or patents.

search-config
loading …

Abstract

We show how the slime mould can be used as a chemical sensor and investigate how the organism combines different sensory information. We have produced a biosensor using protoplasmic tubes of Physarum which is capable of detecting various biologically active chemicals in the local environment; this progress is akin to developing a biological nose using the organism’s natural sensing ability.

Dont have a licence yet? Then find out more about our products and how to get one now:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literature
1.
go back to reference Acker, H.: Cellular oxygen sensors. Ann. N. Y. Acad. Sci. 718, 3–12 (1994)CrossRef Acker, H.: Cellular oxygen sensors. Ann. N. Y. Acad. Sci. 718, 3–12 (1994)CrossRef
2.
go back to reference Adamatzky, A.: Routing Physarum with repellents. Eur. Phys. J. E, Soft Matter 31(4), 403–410 (2010)CrossRef Adamatzky, A.: Routing Physarum with repellents. Eur. Phys. J. E, Soft Matter 31(4), 403–410 (2010)CrossRef
3.
go back to reference Adamatzky, A.: Physarum Machines: Computers from Slime Mould. World Scientific Publishing Co., Pte. Ltd., London (2010) Adamatzky, A.: Physarum Machines: Computers from Slime Mould. World Scientific Publishing Co., Pte. Ltd., London (2010)
4.
go back to reference Adamatzky, A.: Slime mould tactile sensor. Sens. Actuators B: Chem. 188, 38–44 (2013)CrossRef Adamatzky, A.: Slime mould tactile sensor. Sens. Actuators B: Chem. 188, 38–44 (2013)CrossRef
5.
go back to reference Adamatzky, A.: Towards slime mould colour sensor : recognition of colours by Physarum polycephalum. Org. Electron. 14(12), 3147–3500 (2013)CrossRef Adamatzky, A.: Towards slime mould colour sensor : recognition of colours by Physarum polycephalum. Org. Electron. 14(12), 3147–3500 (2013)CrossRef
6.
go back to reference Adamatzky, A.: Tactile bristle sensors made with slime mold. IEEE Sens. J. 14(2), 324–332 (2014)CrossRef Adamatzky, A.: Tactile bristle sensors made with slime mold. IEEE Sens. J. 14(2), 324–332 (2014)CrossRef
7.
go back to reference Adamatzky, A., Jones, J.: On electrical correlates of Physarum polycephalum spatial activity: can we see Physarum machine in the dark? Biophys. Rev. Lett. 06(01n02), 29–57 (2011) Adamatzky, A., Jones, J.: On electrical correlates of Physarum polycephalum spatial activity: can we see Physarum machine in the dark? Biophys. Rev. Lett. 06(01n02), 29–57 (2011)
8.
go back to reference Adamatzky, A., Erokhin, V., Grube, M., Schubert, T., Schumann, A.: Physarum chip project : growing computers from slime mould. Int. J. Unconv. Comput. 8, 319–323 (2012) Adamatzky, A., Erokhin, V., Grube, M., Schubert, T., Schumann, A.: Physarum chip project : growing computers from slime mould. Int. J. Unconv. Comput. 8, 319–323 (2012)
9.
go back to reference Baronian, K.H.R.: The use of yeast and moulds as sensing elements in biosensors. Biosens. Bioelectron. 19(9), 953–962 (2004)CrossRef Baronian, K.H.R.: The use of yeast and moulds as sensing elements in biosensors. Biosens. Bioelectron. 19(9), 953–962 (2004)CrossRef
10.
go back to reference Bjerketorp, J., Håkansson, S., Belkin, S., Jansson, J.K.: Advances in preservation methods: keeping biosensor microorganisms alive and active. Curr. Opin. Biotechnol. 17(1), 43–9 (2006) Bjerketorp, J., Håkansson, S., Belkin, S., Jansson, J.K.: Advances in preservation methods: keeping biosensor microorganisms alive and active. Curr. Opin. Biotechnol. 17(1), 43–9 (2006)
11.
go back to reference Bousse, L.: Whole cell biosensors. Sens. Actuators B: Chem. 34(1–3), 270–275 (1996)CrossRef Bousse, L.: Whole cell biosensors. Sens. Actuators B: Chem. 34(1–3), 270–275 (1996)CrossRef
12.
go back to reference Carlilie, M.J.: Nutrition and chemotaxis in the myxomycete Physarum polycephalum: the effect of carbohydrates on the plasmodium. J. Gen. Microbiol. 63, 221–226 (1970)CrossRef Carlilie, M.J.: Nutrition and chemotaxis in the myxomycete Physarum polycephalum: the effect of carbohydrates on the plasmodium. J. Gen. Microbiol. 63, 221–226 (1970)CrossRef
13.
go back to reference De Lacy Costello, B.P.J., Adamatzky, A.I.: Assessing the chemotaxis behavior of Physarum Polycephalum to a range of simple volatile organic chemicals. Commun. Integr. Biol. 6(5), e25030 (2013) De Lacy Costello, B.P.J., Adamatzky, A.I.: Assessing the chemotaxis behavior of Physarum Polycephalum to a range of simple volatile organic chemicals. Commun. Integr. Biol. 6(5), e25030 (2013)
14.
go back to reference Daniel, J.W., Rusch, H.P.: Method for inducing sporulation of pure cultures of the myxomycete Physarum polycephalum. J. Bacteriol. 83, 234–240 (1962) Daniel, J.W., Rusch, H.P.: Method for inducing sporulation of pure cultures of the myxomycete Physarum polycephalum. J. Bacteriol. 83, 234–240 (1962)
15.
go back to reference Durham, A.C.H., Ridgway, E.B.: Control of chemotaxis in Physarum polycephalum. J. Cell Biol. 69, 218–223 (1976)CrossRef Durham, A.C.H., Ridgway, E.B.: Control of chemotaxis in Physarum polycephalum. J. Cell Biol. 69, 218–223 (1976)CrossRef
16.
go back to reference Durham, A.C.H.: A unified theory of the control of actin and myosin in nonmuscle movements. Cell 2(3), 123–135 (1974)CrossRef Durham, A.C.H.: A unified theory of the control of actin and myosin in nonmuscle movements. Cell 2(3), 123–135 (1974)CrossRef
17.
go back to reference Dussutour, A., Latty, T., Beekman, M., Simpson, S.J.: Amoeboid organism solves complex nutritional challenges. Proc. Nat. Acad. Sci. U.S.A. 107(10), 4607–4611 (2010)CrossRef Dussutour, A., Latty, T., Beekman, M., Simpson, S.J.: Amoeboid organism solves complex nutritional challenges. Proc. Nat. Acad. Sci. U.S.A. 107(10), 4607–4611 (2010)CrossRef
18.
go back to reference Heilbrunn, L.V.: The electric charge of protoplasmic colloids. Physiol. Zool. 12(1), 1–12 (1939)CrossRef Heilbrunn, L.V.: The electric charge of protoplasmic colloids. Physiol. Zool. 12(1), 1–12 (1939)CrossRef
19.
go back to reference Hulanicki, A., Glab, S., Ingman, F.: Chemical sensors: definitions and classification. Pure Appl. Chem. 63(9), 1247–1250 (1991)CrossRef Hulanicki, A., Glab, S., Ingman, F.: Chemical sensors: definitions and classification. Pure Appl. Chem. 63(9), 1247–1250 (1991)CrossRef
20.
go back to reference Kakiuchi, Y., Takahashi, T., Murakami, A., Ueda, T.: Light irradiation induces fragmentation of the plasmodium, a novel photomorphogenesis in the true slime mold Physarum polycephalum: action spectra and evidence for involvement of the phytochrome. Photochem. Photobiol. 73(3), 324–329 (2001)CrossRef Kakiuchi, Y., Takahashi, T., Murakami, A., Ueda, T.: Light irradiation induces fragmentation of the plasmodium, a novel photomorphogenesis in the true slime mold Physarum polycephalum: action spectra and evidence for involvement of the phytochrome. Photochem. Photobiol. 73(3), 324–329 (2001)CrossRef
22.
go back to reference Kamiya, N.: Physical and chemical basis of cyptoplasmic streaming. Annu. Rev. Plant Physiol. 32, 205–236 (1981)CrossRef Kamiya, N.: Physical and chemical basis of cyptoplasmic streaming. Annu. Rev. Plant Physiol. 32, 205–236 (1981)CrossRef
23.
go back to reference Kishimoto, U.: Rhythmicity in the protoplasmic streaming of a slime mold, Physarum polycephalum. J. Gen. Physiol. 41(6), 1205–1222 (1958)CrossRef Kishimoto, U.: Rhythmicity in the protoplasmic streaming of a slime mold, Physarum polycephalum. J. Gen. Physiol. 41(6), 1205–1222 (1958)CrossRef
24.
go back to reference Knowles, D.J., Carlile, M.J.: The chemotactic response of plasmodia of the myxomycete Physarum polycephalum to sugars and related compounds. J. Gen. Microbiol. 108(1), 17–25 (1978)CrossRef Knowles, D.J., Carlile, M.J.: The chemotactic response of plasmodia of the myxomycete Physarum polycephalum to sugars and related compounds. J. Gen. Microbiol. 108(1), 17–25 (1978)CrossRef
25.
go back to reference Köster, M., Gliesche, C.G., Wardenga, R.: Microbiosensors for measurement of microbially available dissolved organic carbon: sensor characteristics and preliminary environmental application. Appl. Environ. Microbiol. 72(11), 7063–7073 (2006)CrossRef Köster, M., Gliesche, C.G., Wardenga, R.: Microbiosensors for measurement of microbially available dissolved organic carbon: sensor characteristics and preliminary environmental application. Appl. Environ. Microbiol. 72(11), 7063–7073 (2006)CrossRef
26.
go back to reference Liu, Q., Ye, W., Yu, H., Hu, N., Du, L., Wang, P., Yang, M.: Olfactory mucosa tissue-based biosensor: a bioelectronic nose with receptor cells in intact olfactory epithelium. Sens. Actuators B: Chem. 146(2), 527–533 (2010)CrossRef Liu, Q., Ye, W., Yu, H., Hu, N., Du, L., Wang, P., Yang, M.: Olfactory mucosa tissue-based biosensor: a bioelectronic nose with receptor cells in intact olfactory epithelium. Sens. Actuators B: Chem. 146(2), 527–533 (2010)CrossRef
27.
go back to reference Liu, S., Cheng, C., Lin, Z., Zhang, J., Li, M., Zhou, Z., Tian, S., Xing, M.: Transient expression in microplasmodia of Physarum polycephalum. Chin. J. Biotechnol. 25(6), 854–862 (2009) Liu, S., Cheng, C., Lin, Z., Zhang, J., Li, M., Zhou, Z., Tian, S., Xing, M.: Transient expression in microplasmodia of Physarum polycephalum. Chin. J. Biotechnol. 25(6), 854–862 (2009)
28.
go back to reference Nakagaki, T., Iima, M., Ueda, T., Nishiura, Y., Saigusa, T., Tero, A., Kobayashi, R., Showalter, K.: Minimum-risk path finding by an adaptive amoebal network. Phys. Rev. Lett. 99(6), 068104 (2007) Nakagaki, T., Iima, M., Ueda, T., Nishiura, Y., Saigusa, T., Tero, A., Kobayashi, R., Showalter, K.: Minimum-risk path finding by an adaptive amoebal network. Phys. Rev. Lett. 99(6), 068104 (2007)
29.
go back to reference Nakagaki, T., Saigusa, T., Tero, A., Kobayashi, R.: Effects of amount of food on path selection in the transport network of an amoeboid organism. In: Topological Aspects of Critical Systems and Networks, pp. 94–100 (2007) Nakagaki, T., Saigusa, T., Tero, A., Kobayashi, R.: Effects of amount of food on path selection in the transport network of an amoeboid organism. In: Topological Aspects of Critical Systems and Networks, pp. 94–100 (2007)
30.
go back to reference Nakagaki, T., Ueda, T.: Phase switching of oscillatory contraction in relation to the regulation of amoeboid behavior by the plasmodium of Physarum polycephalum. J. Theor. Biol. 179(3), 261–267 (1996)CrossRef Nakagaki, T., Ueda, T.: Phase switching of oscillatory contraction in relation to the regulation of amoeboid behavior by the plasmodium of Physarum polycephalum. J. Theor. Biol. 179(3), 261–267 (1996)CrossRef
31.
go back to reference Nakagaki, T., Yamada, H., Ueda, T.: Modulation of cellular rhythm and photoavoidance by oscillatory irradiation in the Physarum plasmodium. Biophys. Chem. 82(1), 23–28 (1999)CrossRef Nakagaki, T., Yamada, H., Ueda, T.: Modulation of cellular rhythm and photoavoidance by oscillatory irradiation in the Physarum plasmodium. Biophys. Chem. 82(1), 23–28 (1999)CrossRef
32.
go back to reference Nakagaki, T.: Smart behavior of true slime mold in a labyrinth. Res. Microbiol. 152(9), 767–770 (2001)CrossRef Nakagaki, T.: Smart behavior of true slime mold in a labyrinth. Res. Microbiol. 152(9), 767–770 (2001)CrossRef
33.
go back to reference Parry, J.M.: Use of tests in yeasts and fungi in the detection and evaluation of carcinogens. IARC Sci. Publ. 146, 471–485 (1999) Parry, J.M.: Use of tests in yeasts and fungi in the detection and evaluation of carcinogens. IARC Sci. Publ. 146, 471–485 (1999)
34.
go back to reference Racek, J.: A yeast biosensor for glucose determination. Appl. Microbiol. Biotechnol. 34(4), 473–477 (1991)CrossRef Racek, J.: A yeast biosensor for glucose determination. Appl. Microbiol. Biotechnol. 34(4), 473–477 (1991)CrossRef
35.
go back to reference Rui, Q., Komori, K., Tian, Y., Liu, H., Luo, Y., Sakai, Y.: Electrochemical biosensor for the detection of H2O2 from living cancer cells based on ZnO nanosheets. Anal. Chim. Acta 670(1–2), 57–62 (2010)CrossRef Rui, Q., Komori, K., Tian, Y., Liu, H., Luo, Y., Sakai, Y.: Electrochemical biosensor for the detection of H2O2 from living cancer cells based on ZnO nanosheets. Anal. Chim. Acta 670(1–2), 57–62 (2010)CrossRef
36.
go back to reference Sachsenmaier, W., Blessing, J., Brauser, B., Hansen, K.: Protoplasmic streaming in Physarum polycephalum. Protoplasma 77(4), 381–396 (1973)CrossRef Sachsenmaier, W., Blessing, J., Brauser, B., Hansen, K.: Protoplasmic streaming in Physarum polycephalum. Protoplasma 77(4), 381–396 (1973)CrossRef
37.
go back to reference Safronova, O.G., Khichenko, V.I., Shtark, M.B.: Possible clinical applications of tissue and cell biosensors. Biomed. Eng. 29(4), 214–222 (1995)CrossRef Safronova, O.G., Khichenko, V.I., Shtark, M.B.: Possible clinical applications of tissue and cell biosensors. Biomed. Eng. 29(4), 214–222 (1995)CrossRef
38.
go back to reference Schreckenbach, T., Walckhoff, B., Verfuerth, C.: Blue-light receptor in a white mutant of Physarum polycephalum mediates inhibition of spherulation and regulation of glucose metabolism. Proc. Nat. Acad. Sci. U.S.A. 78(2), 1009–1013 (1981)CrossRef Schreckenbach, T., Walckhoff, B., Verfuerth, C.: Blue-light receptor in a white mutant of Physarum polycephalum mediates inhibition of spherulation and regulation of glucose metabolism. Proc. Nat. Acad. Sci. U.S.A. 78(2), 1009–1013 (1981)CrossRef
39.
go back to reference Smith, D.A., Saldana, R.: Model of the Ca2+ oscillator for shuttle streaming in Physarum polycephalum. Biophys. J. 61(2), 368–380 (1992)CrossRef Smith, D.A., Saldana, R.: Model of the Ca2+ oscillator for shuttle streaming in Physarum polycephalum. Biophys. J. 61(2), 368–380 (1992)CrossRef
40.
go back to reference Takahashi, K., Uchida, G., Hu, Z.S., Tsuchiya, Y.: Entrainment of the self-sustained oscillation in a Physarum polycephalum strand as a one-dimensionally coupled oscillator system. J. Theor. Biol. 184(2), 105–110 (1997)CrossRef Takahashi, K., Uchida, G., Hu, Z.S., Tsuchiya, Y.: Entrainment of the self-sustained oscillation in a Physarum polycephalum strand as a one-dimensionally coupled oscillator system. J. Theor. Biol. 184(2), 105–110 (1997)CrossRef
41.
go back to reference Tauc, L.: Phenomenes bioelectriques observes dans le plasmode d’un myxomycete (Physarum polycephalum). J. Physiol. (Paris) 46, 659–669 (1954) Tauc, L.: Phenomenes bioelectriques observes dans le plasmode d’un myxomycete (Physarum polycephalum). J. Physiol. (Paris) 46, 659–669 (1954)
42.
go back to reference Ueda, T., Terayama, K., Kurihara, K., Kobatake, Y.: Threshold phenomena in chemoreception and taxis in slime mold Physarum polycephalum. J. Gen. Physiol. 65(2), 223–234 (1975)CrossRef Ueda, T., Terayama, K., Kurihara, K., Kobatake, Y.: Threshold phenomena in chemoreception and taxis in slime mold Physarum polycephalum. J. Gen. Physiol. 65(2), 223–234 (1975)CrossRef
43.
go back to reference Voiculescu, I., Li, F., Liu, F., Zhang, X., Cancel, L.M., Tarbell, J.M., Khademhosseini, A.: Study of long-term viability of endothelial cells for lab-on-a-chip devices. Sens. Actuators B: Chem. 182, 696–705 (2013)CrossRef Voiculescu, I., Li, F., Liu, F., Zhang, X., Cancel, L.M., Tarbell, J.M., Khademhosseini, A.: Study of long-term viability of endothelial cells for lab-on-a-chip devices. Sens. Actuators B: Chem. 182, 696–705 (2013)CrossRef
44.
go back to reference Wang, P., Xu, G., Qin, L., Xu, Y., Li, Y., Li, R.: Cell-based biosensors and its application in biomedicine. Sens. Actuators B: Chem. 108(1–2), 576–584 (2005)CrossRef Wang, P., Xu, G., Qin, L., Xu, Y., Li, Y., Li, R.: Cell-based biosensors and its application in biomedicine. Sens. Actuators B: Chem. 108(1–2), 576–584 (2005)CrossRef
45.
go back to reference Whiting, J.G.H., de Lacy Costello, B.P.J., Adamatzky, A.: Towards slime mould chemical sensor: mapping chemical inputs onto electrical potential dynamics of Physarum Polycephalum. Sens. Actuators B: Chem. 191, 844–853 (2014)CrossRef Whiting, J.G.H., de Lacy Costello, B.P.J., Adamatzky, A.: Towards slime mould chemical sensor: mapping chemical inputs onto electrical potential dynamics of Physarum Polycephalum. Sens. Actuators B: Chem. 191, 844–853 (2014)CrossRef
46.
go back to reference Wohlfarth-Bottermann, K.E., Block, I.: The pathway of photosensory transduction in Physarum polycephalum. Cell Biol. Int. Rep. 5(4), 365–373 (1981)CrossRef Wohlfarth-Bottermann, K.E., Block, I.: The pathway of photosensory transduction in Physarum polycephalum. Cell Biol. Int. Rep. 5(4), 365–373 (1981)CrossRef
Metadata
Title
Chemical Sensors and Information Fusion in Physarum
Authors
James G. H. Whiting
Ben De Lacy Costello
Andrew Adamatzky
Copyright Year
2016
DOI
https://doi.org/10.1007/978-3-319-26662-6_11

Premium Partner