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2020 | OriginalPaper | Chapter

Search for Tandem Repeats in the First Chromosome from the Rice Genome

Authors : Eugene V. Korotkov, Anastasya M. Kamionskaya, Maria A. Korotkova

Published in: Bioinformatics Research and Applications

Publisher: Springer International Publishing

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Abstract

Using the RPWM method, we searched for tandem repeats of 2 to 50 nucleotides long in the rice genome. We compared the effectiveness of the RPWM method with Mreps, T-reks, Tandem Repeat Finder and ATR Hunter. About 70% of the tandem repeats found could not be found by other algorithms. The correlation of dispersed repeats and transposons with tandem repeats was studied in this work. We assumed that some of the dispersed repeats and transposons originated from tandem repeats

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Title: Search for Tandem Repeats in the First Chromosome from the Rice Genome
Authors: Eugene V. Korotkov
Anastasya M. Kamionskaya
Maria A. Korotkova
Publisher: Springer International Publishing
Book: Bioinformatics Research and Applications
Print ISBN: 978-3-030-57820-6

Electronic ISBN: 978-3-030-57821-3

Copyright Year: 2020
DOI: https://doi.org/10.1007/978-3-030-57821-3_26

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