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2021 | OriginalPaper | Chapter

Identification of Satellite DNA in Different Species

Authors : Rachita Ghoshhajra, Sanghamitra Chatterjee, Soma Barman (Mandal)

Published in: Computers and Devices for Communication

Publisher: Springer Singapore

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Abstract

Satellite DNA is a very small DNA sequence which repeats in tandem (array) inside noncoding DNA. We have identified two different Satellite DNA (SatDNA) structures in Transposon of different species and detected its Frequency of Occurrence (FO) using ‘IdenSatDNA’ algorithm. We have found that SatDNA structures are present in both AT-rich and GC-rich sequences, and most of the samples we have tested contain at least one SatDNA structure. We have also pointed out that Frequency of Occurrence (FO) of both DNA structures is very high in at least one NCBI reference sequence for every species. This may play a significant role to unfold the hidden riddle of human evolution.

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Bonnewell, V., Fowler, R.F., Skinner, D.M.: An inverted repeat borders a fivefold amplification in satellite DNA. Science 221(4613), 862–865 (1983)CrossRef

Stringfellow, L.A., Fowler, R.F., La Marca, M.E., Skinner, D.M.: Demonstration of remarkable sequence divergence in variants of a complex satellite DNA by molecular cloning. Gene 38(1–3), 145–152 (1985)CrossRef

Fowler, R.F., Skinner, D.M.: Cryptic satellites rich in inverted repeats comprise 30% of the genome of a hermit crab. J. Biol. Chem. 260(2), 1296–1303 (1985)CrossRef

Rich, J., Ogryzko, V.V., Pirozhkova, I.V.: Satellite DNA and related diseases. Biopolym. Cell 30(4), 249–259 (2014). ISSN 0233–7657

Garrido-Ramos, M.A.: Satellite DNA in plants: more than just rubbish. Cytogenet. Genome Res. 146, 153–170 (2015). https://doi.org/10.1159/000437008

Araujo, N.P., Lima, L.G., Dias, G.B., Silva Kuhn, G.C., et al.: Identification and characterization of a subtelomeric satellite DNA in Callitrichini monkeys. DNA Res. 24(4), 377–385 (2017). https://doi.org/10.1093/dnares/dsx010

Jagannathan, M., Yamashita, Y.M.: Function of junk: pericentromeric satellite DNA in chromosome maintenance. In: Cold Spring Harbor Symposia on Quantitative Biology, vol. LXXXII (2017). https://doi.org/10.1101/sqb.2017.82.034504

Garrido-Ramos, M.A.: Satellite DNA: an evolving topic. Genes 8, 230 (2017). https://doi.org/10.3390/genes8090230

Šatović, E., Zeljko, T.V., Plohl, M.: Characteristics and evolution of satellite DNA sequences in bivalve molluscs. Eur. Zool. J. 85(1), 94–103 (2018). https://doi.org/10.1080/24750263.2018.1443164

10.

Belyayev, A., Josefiová, J., Jandová, M., Kalendar, R., Krak, K., Mandák, B.: Natural history of a satellite DNA family: from the ancestral genome component to species-specific sequences, concerted and non-concerted evolution. Int. J. Mol. Sci. 20, 1201 (2019). https://doi.org/10.3390/ijms20051201

11.

Ghoshhajra, R., Chatterjee, S., Barman (Mandal), S.: Identification of some transposable elements of DNA using “BP Suche” algorithm. In: Das, A., Nayak, J., Naik, B., Pati, S., Pelusi, D. (eds.) Computational Intelligence in Pattern Recognition. Advances in Intelligent Systems and Computing, vol. 999. Springer, Singapore (2020)

12.

Ghoshhajra, R., Chatterjee, S., Barman Mandal, S.: Study of evolution by searching Alu pattern from primate transposon. In: Proceedings of International Conference on Communication Devices & Computing, ICCDC2019. Lecture Note in Electrical Engineering, vol. 602. Springer, Singapore (2019)

13.

https://www.hammiverse.com/lectures/19/2.html

Title: Identification of Satellite DNA in Different Species
Authors: Rachita Ghoshhajra
Sanghamitra Chatterjee
Soma Barman (Mandal)
Publisher: Springer Singapore
Book: Computers and Devices for Communication
Print ISBN: 978-981-15-8365-0

Electronic ISBN: 978-981-15-8366-7

Copyright Year: 2021
DOI: https://doi.org/10.1007/978-981-15-8366-7_9

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