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Erschienen in: Pattern Analysis and Applications 4/2015

01.11.2015 | Theoretical Advances

Automatic segmentation of brain MRI through stationary wavelet transform and random forests

verfasst von: Mohamed Mokhtar Bendib, Hayet Farida Merouani, Fatma Diaba

Erschienen in: Pattern Analysis and Applications | Ausgabe 4/2015

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Abstract

This paper introduces a new brain Magnetic Resonance Imaging segmentation framework that combines a powerful multiresolution/multiscale image analysis technique with a robust weakly used ensemble learning paradigm. Firstly, the image is proceeded with the anisotropic diffusion filter to reduce the noise. Then, Stationary Wavelet Transform (SWT) is applied to get multiresolution/multiscale texture information. During the SWT stage, three levels of decomposition are used and four statistical features are computed around every voxel of each resulting sub-band. The feature extraction step allows to describe each voxel through a feature vector of 60 dimensions. Finally, the extracted features are used to feed a Random Forest classifier. To train and test this classifier, we make use of the Internet Brain Segmentation Repository database. The achieved results showed that our system outperforms other state of art methods for the segmentation of Gray Matter, White Matter, and Cerebrospinal Fluid.

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Literatur
1.
Zurück zum Zitat Robb RA, Ekeland I (1999) Biomedical imaging. Visualization and analysis. Wiley-Liss, USA Robb RA, Ekeland I (1999) Biomedical imaging. Visualization and analysis. Wiley-Liss, USA
2.
Zurück zum Zitat Rizzo G, Tonon C, Lodi R (2012) Looking into the brain: how can conventional, morphometric and functional MRI help in diagnosing and understanding PD? Basal Ganglia 2:175–182CrossRef Rizzo G, Tonon C, Lodi R (2012) Looking into the brain: how can conventional, morphometric and functional MRI help in diagnosing and understanding PD? Basal Ganglia 2:175–182CrossRef
3.
Zurück zum Zitat Laatsch L (2007) The use of functional MRI in traumatic brain injury diagnosis and treatment. Phys Med Rehabil Clin N Am 18:69–85CrossRef Laatsch L (2007) The use of functional MRI in traumatic brain injury diagnosis and treatment. Phys Med Rehabil Clin N Am 18:69–85CrossRef
4.
Zurück zum Zitat Sahraian MA, Eshaghi A (2010) Role of MRI in diagnosis and treatment of multiple sclerosis. Clin Neurol Neurosurg 112:609–615CrossRef Sahraian MA, Eshaghi A (2010) Role of MRI in diagnosis and treatment of multiple sclerosis. Clin Neurol Neurosurg 112:609–615CrossRef
5.
Zurück zum Zitat Saconn PA, Shaw EG, Chan MD, Squire SE, Johnson AJ, McMullen KP, Tatter SB, Ellis TL, Lovato J, Bourland JD, Ekstrand KE, DeGuzman AF, Munley MT (2010) Use of 3.0-T MRI for stereotactic radiosurgery planning for treatment of brain metastases: a single-institution retrospective review. Int J Radiat Oncol Biol Phys 78:1142–1146CrossRef Saconn PA, Shaw EG, Chan MD, Squire SE, Johnson AJ, McMullen KP, Tatter SB, Ellis TL, Lovato J, Bourland JD, Ekstrand KE, DeGuzman AF, Munley MT (2010) Use of 3.0-T MRI for stereotactic radiosurgery planning for treatment of brain metastases: a single-institution retrospective review. Int J Radiat Oncol Biol Phys 78:1142–1146CrossRef
6.
Zurück zum Zitat Bagadia A, Purandare H, Misra BK, Gupta S (2011) Application of magnetic resonance tractography in the perioperative planning of patients with eloquent region intra-axial brain lesions. J Clin Neurosci 18:633–639CrossRef Bagadia A, Purandare H, Misra BK, Gupta S (2011) Application of magnetic resonance tractography in the perioperative planning of patients with eloquent region intra-axial brain lesions. J Clin Neurosci 18:633–639CrossRef
7.
Zurück zum Zitat Butler C, Van Erp W, Bhaduri A, Hammers A, Heckemann R, Zeman A (2013) Magnetic resonance volumetry reveals focal brain atrophy in transient epileptic amnesia. Epilepsy Behav 28:363–369CrossRef Butler C, Van Erp W, Bhaduri A, Hammers A, Heckemann R, Zeman A (2013) Magnetic resonance volumetry reveals focal brain atrophy in transient epileptic amnesia. Epilepsy Behav 28:363–369CrossRef
8.
Zurück zum Zitat Paling SM, Williams ED, Barber R, Burton EJ, Crum WR, Fox NC, O’Brien JT (2004) The application of serial MRI analysis techniques to the study of cerebral atrophy in late-onset dementia. Med Imag Anal 8:69–79CrossRef Paling SM, Williams ED, Barber R, Burton EJ, Crum WR, Fox NC, O’Brien JT (2004) The application of serial MRI analysis techniques to the study of cerebral atrophy in late-onset dementia. Med Imag Anal 8:69–79CrossRef
9.
Zurück zum Zitat Clifford RJ Jr, Petersen RC, Grundman M, Jin S, Gamst A, Ward CP, Sencakova D, Doddy RS, Thal LJ (2008) Longitudinal MRI findings from the vitamin E and donepezil treatment study for MCI. Neurobiol Aging 29:1285–1295CrossRef Clifford RJ Jr, Petersen RC, Grundman M, Jin S, Gamst A, Ward CP, Sencakova D, Doddy RS, Thal LJ (2008) Longitudinal MRI findings from the vitamin E and donepezil treatment study for MCI. Neurobiol Aging 29:1285–1295CrossRef
10.
Zurück zum Zitat Crinion J, Holland AL, Copland DA, Thomson CK, Hillis AE (2013) Neuroimaging in aphasia treatment research: quantifying brain lesions after stroke. NeuroImage 73:208–214CrossRef Crinion J, Holland AL, Copland DA, Thomson CK, Hillis AE (2013) Neuroimaging in aphasia treatment research: quantifying brain lesions after stroke. NeuroImage 73:208–214CrossRef
11.
Zurück zum Zitat Smith-Bindman R, Miglioretti DL, Johnson E, Lee C, Feigelson HS, Flynn M, Greenlee RT, Kruger RL, Hornbrook MC, Roblin D, Solberg LI, Vanneman N, Weinmann S, Williams AE (2012) Use of diagnostic imaging studies and associated radiation exposure for patients enrolled in large integrated health care systems, 1996–2010. J Am Med Assoc 307:2400–2409CrossRef Smith-Bindman R, Miglioretti DL, Johnson E, Lee C, Feigelson HS, Flynn M, Greenlee RT, Kruger RL, Hornbrook MC, Roblin D, Solberg LI, Vanneman N, Weinmann S, Williams AE (2012) Use of diagnostic imaging studies and associated radiation exposure for patients enrolled in large integrated health care systems, 1996–2010. J Am Med Assoc 307:2400–2409CrossRef
12.
Zurück zum Zitat Mohan J, Krishnaveni V, Guo Y (2014) A survey on the magnetic resonance image denoising methods. Biomed Signal Process Control 9:56–69CrossRef Mohan J, Krishnaveni V, Guo Y (2014) A survey on the magnetic resonance image denoising methods. Biomed Signal Process Control 9:56–69CrossRef
13.
Zurück zum Zitat Belaroussi B, Milles J, Carme S, Zhu YM, Benoit-Cattin H (2006) Intensity non-uniformity correction in MRI: existing methods and their validation. Med Imag Anal 10:234–246CrossRef Belaroussi B, Milles J, Carme S, Zhu YM, Benoit-Cattin H (2006) Intensity non-uniformity correction in MRI: existing methods and their validation. Med Imag Anal 10:234–246CrossRef
14.
Zurück zum Zitat Thomas BA, Erlandsson K, Reilhac A, Bousse A, Kazantsev D, Pedemonte S, Vunckx K, Arridge S, Ourselin S, Hutton BF (2012) A comparison of the options for brain partial volume correction using PET/MRI. In: IEEE nuclear science symposium and medical imaging conference 2902–2906 Thomas BA, Erlandsson K, Reilhac A, Bousse A, Kazantsev D, Pedemonte S, Vunckx K, Arridge S, Ourselin S, Hutton BF (2012) A comparison of the options for brain partial volume correction using PET/MRI. In: IEEE nuclear science symposium and medical imaging conference 2902–2906
15.
Zurück zum Zitat Power JD, Mitra A, Laumann TO, Snyder AZ, Schlaggar BL, Petersen SE (2014) Methods to detect, characterize, and remove motion artifact in resting state fMRI. NeuroImage 84:320–341CrossRef Power JD, Mitra A, Laumann TO, Snyder AZ, Schlaggar BL, Petersen SE (2014) Methods to detect, characterize, and remove motion artifact in resting state fMRI. NeuroImage 84:320–341CrossRef
16.
Zurück zum Zitat Balfar MA (2013) New spatial based MRI image de-noising algorithm. Artif Intell Rev 39:225–235CrossRef Balfar MA (2013) New spatial based MRI image de-noising algorithm. Artif Intell Rev 39:225–235CrossRef
17.
Zurück zum Zitat Perona P, Malik J (1990) Scale-space and edge detection using anisotropic diffusion. IEEE Trans Pattern Anal Mach Intell 12:629–639CrossRef Perona P, Malik J (1990) Scale-space and edge detection using anisotropic diffusion. IEEE Trans Pattern Anal Mach Intell 12:629–639CrossRef
18.
Zurück zum Zitat Shapiro LG, Stockman GC (2001) Computer vision. Prentice-Hall, New Jersey Shapiro LG, Stockman GC (2001) Computer vision. Prentice-Hall, New Jersey
19.
Zurück zum Zitat Shanthi KJ, Kumar MS (2007) Skull stripping and automatic segmentation of brain MRI using seed growth and threshold techniques. In: International conference on intelligent and advanced systems. pp 422–426 Shanthi KJ, Kumar MS (2007) Skull stripping and automatic segmentation of brain MRI using seed growth and threshold techniques. In: International conference on intelligent and advanced systems. pp 422–426
20.
Zurück zum Zitat Selvaraj D, Dhanasekaran R (2010) Novel approach for segmentation of brain magnetic resonance imaging using intensity based thresholding. In: IEEE international conference on communication control and computing technologies. pp 502–507 Selvaraj D, Dhanasekaran R (2010) Novel approach for segmentation of brain magnetic resonance imaging using intensity based thresholding. In: IEEE international conference on communication control and computing technologies. pp 502–507
21.
Zurück zum Zitat Szegö G (1967) Orthogonal polynomials. American Mathematical Society, Providence Szegö G (1967) Orthogonal polynomials. American Mathematical Society, Providence
22.
Zurück zum Zitat Matheron G (1975) Random sets and integral geometry. John Wiley & Sons Inc, USAMATH Matheron G (1975) Random sets and integral geometry. John Wiley & Sons Inc, USAMATH
23.
Zurück zum Zitat Serra J (1982) Image analysis and mathematical morphology. Academic Press, OrlandoMATH Serra J (1982) Image analysis and mathematical morphology. Academic Press, OrlandoMATH
24.
Zurück zum Zitat Digabel H, Lantujoul C (1978) Iterative algorithm. In: 2nd European symposium on quantitative analysis of microstructures in materials sciences, biology and medicine. vol 1:85–99 Digabel H, Lantujoul C (1978) Iterative algorithm. In: 2nd European symposium on quantitative analysis of microstructures in materials sciences, biology and medicine. vol 1:85–99
25.
Zurück zum Zitat Stokking R, Vinchen KL, Viergever MA (2000) Automatic morphology-based brain segmentation (MBRASE) from MRI-T1 data. NeuroImage 12:726–738CrossRef Stokking R, Vinchen KL, Viergever MA (2000) Automatic morphology-based brain segmentation (MBRASE) from MRI-T1 data. NeuroImage 12:726–738CrossRef
26.
Zurück zum Zitat Hohne KH, Hanson WA (1992) Interactive 3D segmentation of MRI and CT volumes using morphological operations. J Comput Assist Tomogr 16:285–294CrossRef Hohne KH, Hanson WA (1992) Interactive 3D segmentation of MRI and CT volumes using morphological operations. J Comput Assist Tomogr 16:285–294CrossRef
27.
Zurück zum Zitat Peng S, Gu L (2006) A novel implementation of watershed transform using multi-degree immersion simulation. In: 27th Annual international conference of the engineering in medicine and biology society. pp 1754–1757 Peng S, Gu L (2006) A novel implementation of watershed transform using multi-degree immersion simulation. In: 27th Annual international conference of the engineering in medicine and biology society. pp 1754–1757
28.
Zurück zum Zitat Dempster A, Laird N, Rubin D (1977) Maximum likelihood from incomplete data via the EM algorithm. J Roy Stat Soc Ser B Methodol 39:1–38MATHMathSciNet Dempster A, Laird N, Rubin D (1977) Maximum likelihood from incomplete data via the EM algorithm. J Roy Stat Soc Ser B Methodol 39:1–38MATHMathSciNet
29.
Zurück zum Zitat Wells WM III, Grimson WEL, Kikinis R, Jolesz FA (1996) Adaptive segmentation of MRI data. IEEE Trans Med Imag 15:429–442CrossRef Wells WM III, Grimson WEL, Kikinis R, Jolesz FA (1996) Adaptive segmentation of MRI data. IEEE Trans Med Imag 15:429–442CrossRef
30.
Zurück zum Zitat Greenspan H, Ruf A, Goldberger J (2006) Constrained Gaussian mixture model framework for automatic segmentation of MR brain images. IEEE Trans Med Imag 25:1233–1245CrossRef Greenspan H, Ruf A, Goldberger J (2006) Constrained Gaussian mixture model framework for automatic segmentation of MR brain images. IEEE Trans Med Imag 25:1233–1245CrossRef
31.
Zurück zum Zitat Zhu F, Song Y, Chen J (2010) Brain MR image segmentation based on Gaussian mixture model with spatial information. In: 3rd International congress on image and signal processing. 3:1346–1350 Zhu F, Song Y, Chen J (2010) Brain MR image segmentation based on Gaussian mixture model with spatial information. In: 3rd International congress on image and signal processing. 3:1346–1350
32.
Zurück zum Zitat Geman S, Geman D (1984) Stochastic relaxation, Gibbs distribution, and the Bayesian restoration of images. IEEE Trans Pattern Anal Mach Intell PAMI 6:721–741MATHCrossRef Geman S, Geman D (1984) Stochastic relaxation, Gibbs distribution, and the Bayesian restoration of images. IEEE Trans Pattern Anal Mach Intell PAMI 6:721–741MATHCrossRef
33.
Zurück zum Zitat Zhang Y, Brady M, Smith S (2001) Segmentation of brain MR images through a hidden Markov random field model and the Expectation–Maximization algorithm. IEEE Trans Med Imag 20:45–57CrossRef Zhang Y, Brady M, Smith S (2001) Segmentation of brain MR images through a hidden Markov random field model and the Expectation–Maximization algorithm. IEEE Trans Med Imag 20:45–57CrossRef
34.
Zurück zum Zitat Yousefi S, Zahedi M, Azmi R (2010), 3D MRI brain segmentation based on MRF and hybrid of SA and IGA. In: 17th Iranian conference of, biomedical engineering. pp 1–4 Yousefi S, Zahedi M, Azmi R (2010), 3D MRI brain segmentation based on MRF and hybrid of SA and IGA. In: 17th Iranian conference of, biomedical engineering. pp 1–4
36.
Zurück zum Zitat Zhou Y, Bai J (2007) Atlas-based fuzzy connectedness segmentation and intensity nonuniformity correction applied to brain MRI. IEEE Trans Biomed Eng 54:122–129CrossRef Zhou Y, Bai J (2007) Atlas-based fuzzy connectedness segmentation and intensity nonuniformity correction applied to brain MRI. IEEE Trans Biomed Eng 54:122–129CrossRef
37.
Zurück zum Zitat Luo Y, Chung ACS (2011) An atlas-based deep brain structure segmentation method: from coarse positioning to fine shaping. In: IEEE International conference on acoustics, speech and signal processing. pp 1085–1088 Luo Y, Chung ACS (2011) An atlas-based deep brain structure segmentation method: from coarse positioning to fine shaping. In: IEEE International conference on acoustics, speech and signal processing. pp 1085–1088
38.
Zurück zum Zitat Bezdek J (1981) Pattern recognition with fuzzy objective function algorithms. Kluwer Academic Publishers, USAMATHCrossRef Bezdek J (1981) Pattern recognition with fuzzy objective function algorithms. Kluwer Academic Publishers, USAMATHCrossRef
39.
Zurück zum Zitat Comaniciu D, Meer P (2002) Mean shift : a robust approach toward feature space analysis. IEEE Trans Pattern Anal Mach Intell 24:603–619CrossRef Comaniciu D, Meer P (2002) Mean shift : a robust approach toward feature space analysis. IEEE Trans Pattern Anal Mach Intell 24:603–619CrossRef
40.
Zurück zum Zitat MacQueen J (1967) Some methods for classification and analysis of multivariate observations. Fifth Berkeley Symp Math Stat Prob 1:281–297MathSciNet MacQueen J (1967) Some methods for classification and analysis of multivariate observations. Fifth Berkeley Symp Math Stat Prob 1:281–297MathSciNet
41.
Zurück zum Zitat Klir GJ, Yuan B (1995) Fuzzy sets and fuzzy logic: theory and applications. Prentice Hall, New JerseyMATH Klir GJ, Yuan B (1995) Fuzzy sets and fuzzy logic: theory and applications. Prentice Hall, New JerseyMATH
42.
Zurück zum Zitat Shen S, Sandham W, Granat M, Sterr A (2005) MRI fuzzy segmentation of brain tissue using neighborhood attraction with neural-network optimization. IEEE Trans Inf technol Biomed 9:459–467CrossRef Shen S, Sandham W, Granat M, Sterr A (2005) MRI fuzzy segmentation of brain tissue using neighborhood attraction with neural-network optimization. IEEE Trans Inf technol Biomed 9:459–467CrossRef
43.
Zurück zum Zitat Mayer A, Greenspan H (2009) An adaptive mean-shift framework for MRI brain segmentation. IEEE Trans Med Imag 28:1238–1250CrossRef Mayer A, Greenspan H (2009) An adaptive mean-shift framework for MRI brain segmentation. IEEE Trans Med Imag 28:1238–1250CrossRef
44.
Zurück zum Zitat Georgescu B, Shimshoni I, Meer P (2003) Mean shift based clustering in high dimensions: a texture classification example. In: 9th IEEE International conference on computer vision 1:456–463 Georgescu B, Shimshoni I, Meer P (2003) Mean shift based clustering in high dimensions: a texture classification example. In: 9th IEEE International conference on computer vision 1:456–463
45.
Zurück zum Zitat Kass M, Witkin A, Terzopoulos D (1988) Snakes : active contour models. Int J Comput Vis 1:321–331CrossRef Kass M, Witkin A, Terzopoulos D (1988) Snakes : active contour models. Int J Comput Vis 1:321–331CrossRef
46.
Zurück zum Zitat Freifeld O, Greenspan H, Goldberger J (2007) Lesion detection in noisy MR brain images using constrained GMM and active contours. In: 4th IEEE international symposium on biomedical imaging: from Nano to Macro. pp 596–599 Freifeld O, Greenspan H, Goldberger J (2007) Lesion detection in noisy MR brain images using constrained GMM and active contours. In: 4th IEEE international symposium on biomedical imaging: from Nano to Macro. pp 596–599
47.
Zurück zum Zitat Caselles V, Catte F, Coll T, Dibos F (1993) A geometric model for active contours in image processing. Numerische Mathematik 66:1–31MATHMathSciNetCrossRef Caselles V, Catte F, Coll T, Dibos F (1993) A geometric model for active contours in image processing. Numerische Mathematik 66:1–31MATHMathSciNetCrossRef
48.
Zurück zum Zitat Ciofolo C, Barillot C, Hellier P (2004) Combining fuzzy logic and level set methods for 3D MRI brain segmentation. IEEE Intern Symp Biomed Imag 1:161–164 Ciofolo C, Barillot C, Hellier P (2004) Combining fuzzy logic and level set methods for 3D MRI brain segmentation. IEEE Intern Symp Biomed Imag 1:161–164
49.
Zurück zum Zitat Simpson P (1999) Artificial neural systems : foundations, paradigms, applications, and implementations. Pergamon Press, USA Simpson P (1999) Artificial neural systems : foundations, paradigms, applications, and implementations. Pergamon Press, USA
50.
Zurück zum Zitat Rumelhart DE, Hinton GE, Williams RJ (1986) Learning representations by back-propagating errors. Nature 323:533–536CrossRef Rumelhart DE, Hinton GE, Williams RJ (1986) Learning representations by back-propagating errors. Nature 323:533–536CrossRef
51.
Zurück zum Zitat Emambakhsh M, Sedaaghi MH (2009) Automatic MRI brain segmentation using local features, self-organizing maps, and watershed. In: IEEE International conference on signal and image processing applications. pp 123–128 Emambakhsh M, Sedaaghi MH (2009) Automatic MRI brain segmentation using local features, self-organizing maps, and watershed. In: IEEE International conference on signal and image processing applications. pp 123–128
53.
Zurück zum Zitat Zheng B, Yi Z (2012) A new method based on the CLM of the LV RNN for brain MR image segmentation. Digit Signal Process 22:497–505MathSciNetCrossRef Zheng B, Yi Z (2012) A new method based on the CLM of the LV RNN for brain MR image segmentation. Digit Signal Process 22:497–505MathSciNetCrossRef
54.
Zurück zum Zitat Retter H (1990) A spatial approach for feature linking. Intern Neural Netw Conf 2:898–901CrossRef Retter H (1990) A spatial approach for feature linking. Intern Neural Netw Conf 2:898–901CrossRef
55.
Zurück zum Zitat Vapnik V (1999) The nature of statistical learning theory. Springer-Verlag, New York Vapnik V (1999) The nature of statistical learning theory. Springer-Verlag, New York
56.
Zurück zum Zitat Kasiri K, Kazemi K, Dehghani MJ, Helfroush MS (2010) Atlas-based segmentation of brain MR images using least square support vector machines. In: 2nd International conference on image processing theory tools and applications. pp 306–310 Kasiri K, Kazemi K, Dehghani MJ, Helfroush MS (2010) Atlas-based segmentation of brain MR images using least square support vector machines. In: 2nd International conference on image processing theory tools and applications. pp 306–310
57.
Zurück zum Zitat Bauer S, Nolte LP, Reyes M (2011) Fully automatic segmentation of brain tumor images using support vector machine classification in combination with hierarchical conditional random field regularization. Lecture Notes in Computer Science, vol 6893. Springer, Berlin, pp 354–361 Bauer S, Nolte LP, Reyes M (2011) Fully automatic segmentation of brain tumor images using support vector machine classification in combination with hierarchical conditional random field regularization. Lecture Notes in Computer Science, vol 6893. Springer, Berlin, pp 354–361
58.
Zurück zum Zitat Freund Y, Schapire R (1997) A decision-theoretic generalization of online learning and an application to boosting. J Comput Syst Sci 55:119–139MATHMathSciNetCrossRef Freund Y, Schapire R (1997) A decision-theoretic generalization of online learning and an application to boosting. J Comput Syst Sci 55:119–139MATHMathSciNetCrossRef
59.
Zurück zum Zitat Quddus A, Fieguth P, Basir O (2005) Adaboost and support vector machines for white matter lesion segmentation in MR Images. In: 27th Annual international conference of the engineering in medicine and biology society. pp 463–466 Quddus A, Fieguth P, Basir O (2005) Adaboost and support vector machines for white matter lesion segmentation in MR Images. In: 27th Annual international conference of the engineering in medicine and biology society. pp 463–466
60.
Zurück zum Zitat Xuan X, Liao Q (2007) Statistical structure analysis in MRI brain tumor segmentation. In: Fourth international conference on image and graphics. pp 421–426 Xuan X, Liao Q (2007) Statistical structure analysis in MRI brain tumor segmentation. In: Fourth international conference on image and graphics. pp 421–426
62.
Zurück zum Zitat Caruana R, Karampatziakis N, Yassenalina A (2008) An empirical evaluation of supervised learning in high dimensions. In: 25th international conference on machine learning. pp 96–103 Caruana R, Karampatziakis N, Yassenalina A (2008) An empirical evaluation of supervised learning in high dimensions. In: 25th international conference on machine learning. pp 96–103
63.
Zurück zum Zitat Iglesias JE, Liu CY, Thomson P, Tu Z (2010) Agreement-based semi-supervised learning for skull stripping. Lecture Notes in Computer Science, vol 6363. Springer, Berlin, pp 147–154 Iglesias JE, Liu CY, Thomson P, Tu Z (2010) Agreement-based semi-supervised learning for skull stripping. Lecture Notes in Computer Science, vol 6363. Springer, Berlin, pp 147–154
64.
Zurück zum Zitat Smith S (2002) Fast robust automated brain extraction. Hum Brain Mapp 17:143–155CrossRef Smith S (2002) Fast robust automated brain extraction. Hum Brain Mapp 17:143–155CrossRef
65.
Zurück zum Zitat Segonne F, Dale AM, Busa E, Glessner M, Salat D, Hahn HK, Fischl B (2004) A hybrid approach to the skull stripping problem in MRI. NeuroImage 22:1060–1075CrossRef Segonne F, Dale AM, Busa E, Glessner M, Salat D, Hahn HK, Fischl B (2004) A hybrid approach to the skull stripping problem in MRI. NeuroImage 22:1060–1075CrossRef
66.
Zurück zum Zitat Akselrod-Ballin A, Galun M, Gomori JM, Filippi M, Valsasina P, Basri R, Brandt A (2009) Automatic segmentation and classification of multiple sclerosis in multichannel MRI. IEEE Trans Biomed Eng 56:2461–2469CrossRef Akselrod-Ballin A, Galun M, Gomori JM, Filippi M, Valsasina P, Basri R, Brandt A (2009) Automatic segmentation and classification of multiple sclerosis in multichannel MRI. IEEE Trans Biomed Eng 56:2461–2469CrossRef
67.
Zurück zum Zitat Mallat SG (1989) A theory for multiresolution signal decomposition : the wavelet representation. IEEE Trans Pattern Anal Mach Intell 11:674–693MATHCrossRef Mallat SG (1989) A theory for multiresolution signal decomposition : the wavelet representation. IEEE Trans Pattern Anal Mach Intell 11:674–693MATHCrossRef
68.
Zurück zum Zitat Demirhan A, Güler İ (2011) Combining stationary wavelet transform and self-organizing maps for brain MR image segmentation. Eng Appl Artif Intell 24:358–367CrossRef Demirhan A, Güler İ (2011) Combining stationary wavelet transform and self-organizing maps for brain MR image segmentation. Eng Appl Artif Intell 24:358–367CrossRef
69.
Zurück zum Zitat Nason GP, Silverman BW (1995) The stationary wavelet transform and some statistical applications. Wavelets Stat 103:281–299CrossRef Nason GP, Silverman BW (1995) The stationary wavelet transform and some statistical applications. Wavelets Stat 103:281–299CrossRef
70.
Zurück zum Zitat Kohonen T (2002) The self-organizing maps. Springer-Verlag, Germany Kohonen T (2002) The self-organizing maps. Springer-Verlag, Germany
71.
Zurück zum Zitat Yazdan-Shahmorad A, Soltanian-Zadeh H, Zoroofi RA (2004) MRSI brain tumor characterization using wavelet and wavelet packets feature spaces and artificial neural networks. In: 26th annual international conference of the IEEE engineering in medicine and biology society 1:1810–1813 Yazdan-Shahmorad A, Soltanian-Zadeh H, Zoroofi RA (2004) MRSI brain tumor characterization using wavelet and wavelet packets feature spaces and artificial neural networks. In: 26th annual international conference of the IEEE engineering in medicine and biology society 1:1810–1813
73.
Zurück zum Zitat Wu Y, Wang X, Liao G (2006) SAR images despeckling via bayesian fuzzy shrinkage based on stationary wavelet transform. Wavelet analysis and applications. Applied and numerical harmonic analysis. Birkhäuser Verlag, Switzerland, pp 407–417 Wu Y, Wang X, Liao G (2006) SAR images despeckling via bayesian fuzzy shrinkage based on stationary wavelet transform. Wavelet analysis and applications. Applied and numerical harmonic analysis. Birkhäuser Verlag, Switzerland, pp 407–417
74.
Zurück zum Zitat Schapire RE, Freund Y (2012) Boosting: foundations and algorithms. The MIT Press, London Schapire RE, Freund Y (2012) Boosting: foundations and algorithms. The MIT Press, London
76.
Zurück zum Zitat Segal MR (2003) Machine learning benchmarks and random forest regression. Kluwer Academic Publishers, Netherlands Segal MR (2003) Machine learning benchmarks and random forest regression. Kluwer Academic Publishers, Netherlands
77.
Zurück zum Zitat Berthold MR, Borgelt C, Höppner F, Klawonn F (2010) Guide to intelligent data analysis. How to intelligently make sense of real data. Springer-Verlag, LondonMATHCrossRef Berthold MR, Borgelt C, Höppner F, Klawonn F (2010) Guide to intelligent data analysis. How to intelligently make sense of real data. Springer-Verlag, LondonMATHCrossRef
78.
Zurück zum Zitat Mann HB, Whitney DR (1947) On a test of whether one of two random variables is stochastically larger than the other. Ann Math Stat 18:1–164MathSciNetCrossRef Mann HB, Whitney DR (1947) On a test of whether one of two random variables is stochastically larger than the other. Ann Math Stat 18:1–164MathSciNetCrossRef
79.
Zurück zum Zitat Kruskal WH, Wallis WA (1952) Use of ranks in one-criterion variance analysis. J Am Stat Assoc 47:583–621MATHCrossRef Kruskal WH, Wallis WA (1952) Use of ranks in one-criterion variance analysis. J Am Stat Assoc 47:583–621MATHCrossRef
80.
Zurück zum Zitat Hochberg Y, Tamhane AC (1987) Multiple comparison procedures. John Wiley & Sons Inc, CanadaMATHCrossRef Hochberg Y, Tamhane AC (1987) Multiple comparison procedures. John Wiley & Sons Inc, CanadaMATHCrossRef
81.
Zurück zum Zitat Reyes-Aldasoro CC, Bhalerao A (2006) The Bhattacharyya space for feature selection and its application to texture segmentation. Pattern Recogn 39:812–826MATHCrossRef Reyes-Aldasoro CC, Bhalerao A (2006) The Bhattacharyya space for feature selection and its application to texture segmentation. Pattern Recogn 39:812–826MATHCrossRef
82.
Zurück zum Zitat Puig D, Garcia MA, Melendez J (2010) Application-independent feature selection for texture classification. Pattern Recogn 43:3282–3297MATHCrossRef Puig D, Garcia MA, Melendez J (2010) Application-independent feature selection for texture classification. Pattern Recogn 43:3282–3297MATHCrossRef
83.
Zurück zum Zitat Ait Kerroum M, Hammouch A, Aboutajdine D (2010) Textural feature selection by joint mutual information based on Gaussian mixture model for multispectral image classification. Pattern Recogn Lett 31:1168–1174CrossRef Ait Kerroum M, Hammouch A, Aboutajdine D (2010) Textural feature selection by joint mutual information based on Gaussian mixture model for multispectral image classification. Pattern Recogn Lett 31:1168–1174CrossRef
84.
Zurück zum Zitat Cerasa A, Bilotta E, Augimeri A, Cherubini A, Pantano P, Zito G, Lanza P, Valentino P, Gioia MC, Quattrone A (2012) A cellular neural network methodology for the automated segmentation of multiple sclerosis lesions. J Neurosci Methods 203:193–199CrossRef Cerasa A, Bilotta E, Augimeri A, Cherubini A, Pantano P, Zito G, Lanza P, Valentino P, Gioia MC, Quattrone A (2012) A cellular neural network methodology for the automated segmentation of multiple sclerosis lesions. J Neurosci Methods 203:193–199CrossRef
85.
Zurück zum Zitat Jiang J, Wu Y, Huang M, Yang W, Chen W, Feng Q (2013) 3D brain tumor segmentation in multimodal MR images based on learning population- and patient-specific feature sets. Comput Med Imaging Graph 37:512–521CrossRef Jiang J, Wu Y, Huang M, Yang W, Chen W, Feng Q (2013) 3D brain tumor segmentation in multimodal MR images based on learning population- and patient-specific feature sets. Comput Med Imaging Graph 37:512–521CrossRef
86.
Zurück zum Zitat Thapaliya K, Pyun JY, Park CS, Kwon GR (2013) Level set method with automatic selective local statistics for brain tumor segmentation in MR images. Comput Med Imaging Graph 37:522–537CrossRef Thapaliya K, Pyun JY, Park CS, Kwon GR (2013) Level set method with automatic selective local statistics for brain tumor segmentation in MR images. Comput Med Imaging Graph 37:522–537CrossRef
87.
Zurück zum Zitat Bian W, Hess CP, Chang SM, Nelson SJ, Lupo JM (2013) Computer-aided detection of radiation-induced cerebral microbleeds on susceptibility-weighted MR images. NeuroImage Clin 2:282–290CrossRef Bian W, Hess CP, Chang SM, Nelson SJ, Lupo JM (2013) Computer-aided detection of radiation-induced cerebral microbleeds on susceptibility-weighted MR images. NeuroImage Clin 2:282–290CrossRef
88.
Zurück zum Zitat Steenwijk MD, Pouwels PJW, Daams M, van Dalen JW, Caan MWA, Richard E, Barkhof F, Vrenken H (2013) Accurate white matter lesion segmentation by k nearest neighbor classification with tissue type priors (kNN-TTPs). NeuroImage Clin 3:462–469CrossRef Steenwijk MD, Pouwels PJW, Daams M, van Dalen JW, Caan MWA, Richard E, Barkhof F, Vrenken H (2013) Accurate white matter lesion segmentation by k nearest neighbor classification with tissue type priors (kNN-TTPs). NeuroImage Clin 3:462–469CrossRef
Metadaten
Titel
Automatic segmentation of brain MRI through stationary wavelet transform and random forests
verfasst von
Mohamed Mokhtar Bendib
Hayet Farida Merouani
Fatma Diaba
Publikationsdatum
01.11.2015
Verlag
Springer London
Erschienen in
Pattern Analysis and Applications / Ausgabe 4/2015
Print ISSN: 1433-7541
Elektronische ISSN: 1433-755X
DOI
https://doi.org/10.1007/s10044-014-0373-y

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