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2019 | OriginalPaper | Buchkapitel

Bioinformatics Methods to Discover Antivirals Against Zika Virus

verfasst von : Karina Salvatierra, Marcos Vera, Hector Florez

Erschienen in: Applied Informatics

Verlag: Springer International Publishing

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Abstract

Zika virus is a member of the Flaviviridae virus family, similar to other viruses that affect humans, such as hepatitis C and dengue virus. After its first appearance in 1947, Zika virus reappeared in 2016 causing an international public health emergency. Zika virus was considered a non dangerous human pathogen; however, it is currently considered a pathogen with serious consequences for human health, showing association with neurological complications such as Guillain-Barre syndrome and microcephaly. Then, it is necessary to get antivirals able to inhibit the replication of the Zika virus since vaccines for this virus are not yet available. Zika virus structure is similar to hepatitis C virus structure. This characteristic suggests that anti-hepatitis C virus agents can be used as alternative in treatments against the Zika virus. This work aims to determine a non-nucleoside analogue antivirals that can be considered possible antivirals against Zika virus. In this study, we used computational methods to analyze the Docking and the modeling of the NS5 polymerase of Zika virus and antivirals.

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Literatur
1.
Zurück zum Zitat Alam, A., Imam, N., Ali, S., Malik, M.Z., Ishrat, R., et al.: Recent trends in ZIKV research: a step away from cure. Biomed. Pharmacother. 91, 1152–1159 (2017)CrossRef Alam, A., Imam, N., Ali, S., Malik, M.Z., Ishrat, R., et al.: Recent trends in ZIKV research: a step away from cure. Biomed. Pharmacother. 91, 1152–1159 (2017)CrossRef
2.
Zurück zum Zitat Calvet, G., et al.: Detection and sequencing of Zika virus from amniotic fluid of fetuses with microcephaly in Brazil: a case study. Lancet Infect. Dis. 16(6), 653–660 (2016)CrossRef Calvet, G., et al.: Detection and sequencing of Zika virus from amniotic fluid of fetuses with microcephaly in Brazil: a case study. Lancet Infect. Dis. 16(6), 653–660 (2016)CrossRef
3.
Zurück zum Zitat Cox, B.D., Stanton, R.A., Schinazi, R.F.: Predicting Zika virus structural biology: challenges and opportunities for intervention. Antivir. Chem. Chemother. 24(3–4), 118–126 (2015)CrossRef Cox, B.D., Stanton, R.A., Schinazi, R.F.: Predicting Zika virus structural biology: challenges and opportunities for intervention. Antivir. Chem. Chemother. 24(3–4), 118–126 (2015)CrossRef
4.
Zurück zum Zitat Delvecchio, R., et al.: Chloroquine, an endocytosis blocking agent, inhibits Zika virus infection in different cell models. Viruses 8(12), 322 (2016)CrossRef Delvecchio, R., et al.: Chloroquine, an endocytosis blocking agent, inhibits Zika virus infection in different cell models. Viruses 8(12), 322 (2016)CrossRef
5.
Zurück zum Zitat Dick, G., Kitchen, S., Haddow, A., et al.: Zika virus (II). Pathogenicity and physical properties. Trans. R. Soc. Trop. Med. Hyg. 46(5), 521–534 (1952)CrossRef Dick, G., Kitchen, S., Haddow, A., et al.: Zika virus (II). Pathogenicity and physical properties. Trans. R. Soc. Trop. Med. Hyg. 46(5), 521–534 (1952)CrossRef
6.
Zurück zum Zitat Eyer, L., et al.: Nucleoside inhibitors of Zika virus. J. Infect. Dis. 214(5), 707–711 (2016)CrossRef Eyer, L., et al.: Nucleoside inhibitors of Zika virus. J. Infect. Dis. 214(5), 707–711 (2016)CrossRef
7.
Zurück zum Zitat Fagbami, A.: Zika virus infections in Nigeria: virological and seroepidemiological investigations in Oyo state. Epidemiol. Infect. 83(2), 213–219 (1979) Fagbami, A.: Zika virus infections in Nigeria: virological and seroepidemiological investigations in Oyo state. Epidemiol. Infect. 83(2), 213–219 (1979)
8.
Zurück zum Zitat Fauci, A.S., Morens, D.M.: Zika virus in the Americas–yet another arbovirus threat. N. Engl. J. Med. 374(7), 601–604 (2016)CrossRef Fauci, A.S., Morens, D.M.: Zika virus in the Americas–yet another arbovirus threat. N. Engl. J. Med. 374(7), 601–604 (2016)CrossRef
10.
Zurück zum Zitat Florez, H., Salvatierra, K.: Bioinformatics study of mutations of resistance to antivirals in the NS5A gen of HCV. Int. Inf. Inst. (Tokyo) Inf. 20(9), 6665–6672 (2017) Florez, H., Salvatierra, K.: Bioinformatics study of mutations of resistance to antivirals in the NS5A gen of HCV. Int. Inf. Inst. (Tokyo) Inf. 20(9), 6665–6672 (2017)
11.
Zurück zum Zitat Hamel, R., et al.: Zika virus: epidemiology, clinical features and host-virus interactions. Microbes Infect. 18(7–8), 441–449 (2016)CrossRef Hamel, R., et al.: Zika virus: epidemiology, clinical features and host-virus interactions. Microbes Infect. 18(7–8), 441–449 (2016)CrossRef
12.
Zurück zum Zitat Kieffer, T.L., Kwong, A.D., Picchio, G.R.: Viral resistance to specifically targeted antiviral therapies for hepatitis C (STAT-Cs). J. Antimicrob. Chemother. 65(2), 202–212 (2009)CrossRef Kieffer, T.L., Kwong, A.D., Picchio, G.R.: Viral resistance to specifically targeted antiviral therapies for hepatitis C (STAT-Cs). J. Antimicrob. Chemother. 65(2), 202–212 (2009)CrossRef
13.
Zurück zum Zitat Koenig, K.L., Almadhyan, A., Burns, M.J.: Identify-isolate-inform: a tool for initial detection and management of Zika virus patients in the emergency department. West. J. Emerg. Med. 17(3), 238 (2016)CrossRef Koenig, K.L., Almadhyan, A., Burns, M.J.: Identify-isolate-inform: a tool for initial detection and management of Zika virus patients in the emergency department. West. J. Emerg. Med. 17(3), 238 (2016)CrossRef
14.
Zurück zum Zitat Kostyuchenko, V.A., et al.: Structure of the thermally stable Zika virus. Nature 533(7603), 425 (2016)CrossRef Kostyuchenko, V.A., et al.: Structure of the thermally stable Zika virus. Nature 533(7603), 425 (2016)CrossRef
15.
Zurück zum Zitat Kwong, A.D., McNair, L., Jacobson, I., George, S.: Recent progress in the development of selected hepatitis C virus NS3.4A protease and NS5B polymerase inhibitors. Curr. Opin. Pharmacol. 8(5), 522–531 (2008)CrossRef Kwong, A.D., McNair, L., Jacobson, I., George, S.: Recent progress in the development of selected hepatitis C virus NS3.4A protease and NS5B polymerase inhibitors. Curr. Opin. Pharmacol. 8(5), 522–531 (2008)CrossRef
16.
Zurück zum Zitat Li, C., et al.: Zika virus disrupts neural progenitor development and leads to microcephaly in mice. Cell Stem Cell 19(1), 120–126 (2016)CrossRef Li, C., et al.: Zika virus disrupts neural progenitor development and leads to microcephaly in mice. Cell Stem Cell 19(1), 120–126 (2016)CrossRef
17.
Zurück zum Zitat Lou, Z., Sun, Y., Rao, Z.: Current progress in antiviral strategies. Trends Pharmacol. Sci. 35(2), 86–102 (2014)CrossRef Lou, Z., Sun, Y., Rao, Z.: Current progress in antiviral strategies. Trends Pharmacol. Sci. 35(2), 86–102 (2014)CrossRef
18.
Zurück zum Zitat Organization, W.H., et al.: Zika virus research agenda (2016) Organization, W.H., et al.: Zika virus research agenda (2016)
19.
Zurück zum Zitat Pang, T., Mak, T.K., Gubler, D.J.: Prevention and control of dengue–the light at the end of the tunnel. Lancet Infect. Dis. 17(3), e79–e87 (2017)CrossRef Pang, T., Mak, T.K., Gubler, D.J.: Prevention and control of dengue–the light at the end of the tunnel. Lancet Infect. Dis. 17(3), e79–e87 (2017)CrossRef
20.
Zurück zum Zitat Pattnaik, A., et al.: Discovery of a non-nucleoside rna polymerase inhibitor for blocking Zika virus replication through in silico screening. Antivir. Res. 151, 78–86 (2018)CrossRef Pattnaik, A., et al.: Discovery of a non-nucleoside rna polymerase inhibitor for blocking Zika virus replication through in silico screening. Antivir. Res. 151, 78–86 (2018)CrossRef
21.
Zurück zum Zitat Penié, J.B., González-Piñera, J.G., Rodríguez, M.A.R., Alfonso, P.P.P.: Medicamentos antivirales. Acta Médica 8(1), 86–100 (1998) Penié, J.B., González-Piñera, J.G., Rodríguez, M.A.R., Alfonso, P.P.P.: Medicamentos antivirales. Acta Médica 8(1), 86–100 (1998)
22.
Zurück zum Zitat Petersen, L.R., Jamieson, D.J., Powers, A.M., Honein, M.A.: Zika virus. N. Engl. J. Med. 374(16), 1552–1563 (2016)CrossRef Petersen, L.R., Jamieson, D.J., Powers, A.M., Honein, M.A.: Zika virus. N. Engl. J. Med. 374(16), 1552–1563 (2016)CrossRef
23.
Zurück zum Zitat Plourde, A.R., Bloch, E.M.: A literature review of Zika virus. Emerg. Infect. Dis. 22(7), 1185 (2016)CrossRef Plourde, A.R., Bloch, E.M.: A literature review of Zika virus. Emerg. Infect. Dis. 22(7), 1185 (2016)CrossRef
24.
Zurück zum Zitat Rather, I.A., Lone, J.B., Bajpai, V.K., Paek, W.K., Lim, J.: Zika virus: an emerging worldwide threat. Front. Microbiol 8, 1417 (2017)CrossRef Rather, I.A., Lone, J.B., Bajpai, V.K., Paek, W.K., Lim, J.: Zika virus: an emerging worldwide threat. Front. Microbiol 8, 1417 (2017)CrossRef
25.
Zurück zum Zitat Sacramento, C.Q., et al.: The clinically approved antiviral drug sofosbuvir impairs Brazilian Zika virus replication. BioRxiv, p. 061671 (2016) Sacramento, C.Q., et al.: The clinically approved antiviral drug sofosbuvir impairs Brazilian Zika virus replication. BioRxiv, p. 061671 (2016)
26.
Zurück zum Zitat Saiz, J.C., Vázquez-Calvo, Á., Blázquez, A.B., Merino-Ramos, T., Escribano-Romero, E., Martín-Acebes, M.A.: Zika virus: the latest newcomer. Front. Microbiol. 7, 496 (2016) Saiz, J.C., Vázquez-Calvo, Á., Blázquez, A.B., Merino-Ramos, T., Escribano-Romero, E., Martín-Acebes, M.A.: Zika virus: the latest newcomer. Front. Microbiol. 7, 496 (2016)
27.
Zurück zum Zitat Salvatierra, K., Florez, H.: Analysis of hepatitis C virus in hemodialysis patients. Infectio 20(3), 130–137 (2016)CrossRef Salvatierra, K., Florez, H.: Analysis of hepatitis C virus in hemodialysis patients. Infectio 20(3), 130–137 (2016)CrossRef
28.
Zurück zum Zitat Salvatierra, K., Florez, H.: Biomedical mutation analysis (BMA): a software tool for analyzing mutations associated with antiviral resistance. F1000Research 5, 1141 (2016)CrossRef Salvatierra, K., Florez, H.: Biomedical mutation analysis (BMA): a software tool for analyzing mutations associated with antiviral resistance. F1000Research 5, 1141 (2016)CrossRef
29.
Zurück zum Zitat Salvatierra, K., Florez, H.: Prevalence of hepatitis B and C infections in hemodialysis patients. F1000Research 5, 1–6 (2016) CrossRef Salvatierra, K., Florez, H.: Prevalence of hepatitis B and C infections in hemodialysis patients. F1000Research 5, 1–6 (2016) CrossRef
30.
Zurück zum Zitat Song, B.H., Yun, S.I., Woolley, M., Lee, Y.M.: Zika virus: history, epidemiology, transmission, and clinical presentation. J. Neuroimmunol. 308, 50–64 (2017)CrossRef Song, B.H., Yun, S.I., Woolley, M., Lee, Y.M.: Zika virus: history, epidemiology, transmission, and clinical presentation. J. Neuroimmunol. 308, 50–64 (2017)CrossRef
31.
Zurück zum Zitat Trott, O., Olson, A.J.: Autodock vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. J. Comput. Chem. 31(2), 455–461 (2010) Trott, O., Olson, A.J.: Autodock vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. J. Comput. Chem. 31(2), 455–461 (2010)
32.
Zurück zum Zitat Tuset, M., José, M., Del Cacho, E., Alberdi, A., Codina, C., Ribas, J., et al.: Características de los fármacos antivirales. Enfermedades infecciosas y microbiologia clinica 21(8), 433–458 (2003)CrossRef Tuset, M., José, M., Del Cacho, E., Alberdi, A., Codina, C., Ribas, J., et al.: Características de los fármacos antivirales. Enfermedades infecciosas y microbiologia clinica 21(8), 433–458 (2003)CrossRef
33.
Zurück zum Zitat Yang, C.C., et al.: A novel dengue virus inhibitor, BP13944, discovered by high-throughput screening with dengue virus replicon cells selects for resistance in the viral NS2B/NS3 protease. Antimicrob. Agents Chemother. 58(1), 110–119 (2014)CrossRef Yang, C.C., et al.: A novel dengue virus inhibitor, BP13944, discovered by high-throughput screening with dengue virus replicon cells selects for resistance in the viral NS2B/NS3 protease. Antimicrob. Agents Chemother. 58(1), 110–119 (2014)CrossRef
34.
Zurück zum Zitat Yin, Z., et al.: An adenosine nucleoside inhibitor of dengue virus. Proc. Natl. Acad. Sci. 106(48), 20435–20439 (2009)CrossRef Yin, Z., et al.: An adenosine nucleoside inhibitor of dengue virus. Proc. Natl. Acad. Sci. 106(48), 20435–20439 (2009)CrossRef
35.
Zurück zum Zitat Zmurko, J., Marques, R.E., Schols, D., Verbeken, E., Kaptein, S.J., Neyts, J.: The viral polymerase inhibitor 7-deaza-2’-c-methyladenosine is a potent inhibitor of in vitro Zika virus replication and delays disease progression in a robust mouse infection model. PLoS Negl. Trop. Dis. 10(5), e0004695 (2016)CrossRef Zmurko, J., Marques, R.E., Schols, D., Verbeken, E., Kaptein, S.J., Neyts, J.: The viral polymerase inhibitor 7-deaza-2’-c-methyladenosine is a potent inhibitor of in vitro Zika virus replication and delays disease progression in a robust mouse infection model. PLoS Negl. Trop. Dis. 10(5), e0004695 (2016)CrossRef
Metadaten
Titel
Bioinformatics Methods to Discover Antivirals Against Zika Virus
verfasst von
Karina Salvatierra
Marcos Vera
Hector Florez
Copyright-Jahr
2019
DOI
https://doi.org/10.1007/978-3-030-32475-9_1