Skip to main content

2019 | OriginalPaper | Buchkapitel

Brain Tumor Detection and Classification from Multi-sequence MRI: Study Using ConvNets

verfasst von : Subhashis Banerjee, Sushmita Mitra, Francesco Masulli, Stefano Rovetta

Erschienen in: Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries

Verlag: Springer International Publishing

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

In this paper, we thoroughly investigate the power of Deep Convolutional Neural Networks (ConvNets) for classification of brain tumors using multi-sequence MR images. First we propose three ConvNets, which are trained from scratch, on MRI patches, slices, and multi-planar volumetric slices. The suitability of transfer learning for the task is next studied by applying two existing ConvNets models (VGGNet and ResNet) pre-trained on ImageNet dataset, through fine-tuning of the last few layers. Leave-one-patient-out (LOPO) testing scheme is used to evaluate the performance of the ConvNets. Results demonstrate that ConvNet achieves better accuracy in all cases where the model is trained on the multi-planar volumetric dataset. Unlike conventional models, it obtains a testing accuracy of \(97\%\) without any additional effort towards extraction and selection of features. We also study the properties of self-learned kernels/filters in different layers, through visualization of the intermediate layer outputs.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literatur
1.
Zurück zum Zitat Louis, D.N., et al.: The 2007 WHO classification of tumours of the central nervous system. Acta Neuropathol. 114(2), 97–109 (2007)CrossRef Louis, D.N., et al.: The 2007 WHO classification of tumours of the central nervous system. Acta Neuropathol. 114(2), 97–109 (2007)CrossRef
2.
Zurück zum Zitat McGirt, M.J., et al.: Independent predictors of morbidity after image-guided stereotactic brain biopsy: a risk assessment of 270 cases. J. Neurosurg. 102(5), 897–901 (2005)CrossRef McGirt, M.J., et al.: Independent predictors of morbidity after image-guided stereotactic brain biopsy: a risk assessment of 270 cases. J. Neurosurg. 102(5), 897–901 (2005)CrossRef
3.
Zurück zum Zitat Chandrasoma, P.T., Smith, M.M., Apuzzo, M.L.J.: Stereotactic biopsy in the diagnosis of brain masses: comparison of results of biopsy and resected surgical specimen. Neurosurgery 24(2), 160–165 (1989)CrossRef Chandrasoma, P.T., Smith, M.M., Apuzzo, M.L.J.: Stereotactic biopsy in the diagnosis of brain masses: comparison of results of biopsy and resected surgical specimen. Neurosurgery 24(2), 160–165 (1989)CrossRef
4.
Zurück zum Zitat Mitra, S., Uma Shankar, B.: Medical image analysis for cancer management in natural computing framework. Inf. Sci. 306, 111–131 (2015)CrossRef Mitra, S., Uma Shankar, B.: Medical image analysis for cancer management in natural computing framework. Inf. Sci. 306, 111–131 (2015)CrossRef
5.
Zurück zum Zitat Zhou, M., et al.: Radiomics in brain tumor: image assessment, quantitative feature descriptors, and machine-learning approaches. Am. J. Neuroradiol. 39(2), 208–216 (2017)CrossRef Zhou, M., et al.: Radiomics in brain tumor: image assessment, quantitative feature descriptors, and machine-learning approaches. Am. J. Neuroradiol. 39(2), 208–216 (2017)CrossRef
6.
Zurück zum Zitat Banerjee, S., Mitra, S., Shankar, B.U.: Synergetic neuro-fuzzy feature selection and classification of brain tumors. In: Proceedings of IEEE International Conference on Fuzzy Systems (FUZZ-IEEE), pp. 1–6 (2017) Banerjee, S., Mitra, S., Shankar, B.U.: Synergetic neuro-fuzzy feature selection and classification of brain tumors. In: Proceedings of IEEE International Conference on Fuzzy Systems (FUZZ-IEEE), pp. 1–6 (2017)
7.
Zurück zum Zitat Banerjee, S., Mitra, S., Uma Shankar, B., Hayashi, Y.: A novel GBM saliency detection model using multi-channel MRI. PLoS ONE 11(1), e0146388 (2016)CrossRef Banerjee, S., Mitra, S., Uma Shankar, B., Hayashi, Y.: A novel GBM saliency detection model using multi-channel MRI. PLoS ONE 11(1), e0146388 (2016)CrossRef
8.
Zurück zum Zitat He, K., Zhang, X., Ren, S., Sun, J.: Deep residual learning for image recognition. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 770–778 (2016) He, K., Zhang, X., Ren, S., Sun, J.: Deep residual learning for image recognition. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 770–778 (2016)
9.
Zurück zum Zitat Tajbakhsh, N., et al.: Convolutional neural networks for medical image analysis: full training or fine tuning? IEEE Trans. Med. Imaging 35(5), 1299–1312 (2016)CrossRef Tajbakhsh, N., et al.: Convolutional neural networks for medical image analysis: full training or fine tuning? IEEE Trans. Med. Imaging 35(5), 1299–1312 (2016)CrossRef
10.
Zurück zum Zitat Simonyan, K., Zisserman, A.: Very deep convolutional networks for large-scale image recognition, arXiv preprint arXiv:1409.1556 (2014) Simonyan, K., Zisserman, A.: Very deep convolutional networks for large-scale image recognition, arXiv preprint arXiv:​1409.​1556 (2014)
11.
Zurück zum Zitat Scarpace, L., et al.: Radiology data from the cancer genome atlas glioblastoma multiforme [TCGA-GBM] collection. Cancer Imaging Arch. (2016) Scarpace, L., et al.: Radiology data from the cancer genome atlas glioblastoma multiforme [TCGA-GBM] collection. Cancer Imaging Arch. (2016)
13.
Zurück zum Zitat Clark, K., et al.: The cancer imaging archive (TCIA): maintaining and operating a public information repository. J. Digit. Imaging 26, 1045–1057 (2013)CrossRef Clark, K., et al.: The cancer imaging archive (TCIA): maintaining and operating a public information repository. J. Digit. Imaging 26, 1045–1057 (2013)CrossRef
Metadaten
Titel
Brain Tumor Detection and Classification from Multi-sequence MRI: Study Using ConvNets
verfasst von
Subhashis Banerjee
Sushmita Mitra
Francesco Masulli
Stefano Rovetta
Copyright-Jahr
2019
DOI
https://doi.org/10.1007/978-3-030-11723-8_17

Premium Partner