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2017 | OriginalPaper | Buchkapitel

Classification of Cocaine Dependents from fMRI Data Using Cluster-Based Stratification and Deep Learning

verfasst von : Jeferson S. Santos, Ricardo M. Savii, Jaime S. Ide, Chiang-Shan R. Li, Marcos G. Quiles, Márcio P. Basgalupp

Erschienen in: Computational Science and Its Applications – ICCSA 2017

Verlag: Springer International Publishing

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Abstract

Cocaine dependence continues to devastate millions of human lives. According to the 2013 National Survey on Drug Use and Health, approximately 1.5 million Americans are currently addicted to cocaine. It is important to understand how cocaine addicts and non-addicted individuals differ in the functional organization of the brain. This work advances the identification of cocaine dependence based on fMRI classification and innovates by employing deep learning methods. Deep learning has proved its utility in machine learning community, mainly in computational vision and voice recognition. Recently, studies have successfully applied it to fMRI data for brain decoding and classification of pathologies, such as schizophrenia and Alzheimer’s disease. These fMRI data were relatively large, and the use of deep learning in small data sets still remains a challenge. In this study, we fill this gap by (i) using Deep Belief Networks and Deep Neural Network to classify cocaine dependents from fMRI, and (ii) presenting a novel stratification method for robust training and evaluation of a relatively small data set. Our results show that deep learning outperforms traditional techniques in most cases, and present a great potential for improvement.

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Literatur
1.
Zurück zum Zitat Demšar, J.: Statistical comparisons of classifiers over multiple data sets. J. Mach. Learn. Res. 7, 1–30 (2006)MathSciNetMATH Demšar, J.: Statistical comparisons of classifiers over multiple data sets. J. Mach. Learn. Res. 7, 1–30 (2006)MathSciNetMATH
2.
Zurück zum Zitat Floreano, D., Mattiussi, C.: Bio-Inspired Artificial Intelligence: Theories, Methods, and Technologies. The MIT Press, Cambridge (2008) Floreano, D., Mattiussi, C.: Bio-Inspired Artificial Intelligence: Theories, Methods, and Technologies. The MIT Press, Cambridge (2008)
4.
Zurück zum Zitat Friston, K.J.: Statistical Parametric Mapping: The Analysis of Functional Brain Images. Elsevier/Academic Press, Amsterdam/Boston (2007)CrossRef Friston, K.J.: Statistical Parametric Mapping: The Analysis of Functional Brain Images. Elsevier/Academic Press, Amsterdam/Boston (2007)CrossRef
5.
Zurück zum Zitat Friston, K.J., Holmes, A.P., Worsley, K.J., Poline, J.P., Frith, C.D., Frackowiak, R.S.J.: Statistical parametric maps in functional imaging: a general linear approach. Hum. Brain Mapp. 2(4), 189–210 (1995)CrossRef Friston, K.J., Holmes, A.P., Worsley, K.J., Poline, J.P., Frith, C.D., Frackowiak, R.S.J.: Statistical parametric maps in functional imaging: a general linear approach. Hum. Brain Mapp. 2(4), 189–210 (1995)CrossRef
6.
Zurück zum Zitat Fritzke, B., et al.: A growing neural gas network learns topologies. Adv. Neural Inf. Process. Syst. 7, 625–632 (1995) Fritzke, B., et al.: A growing neural gas network learns topologies. Adv. Neural Inf. Process. Syst. 7, 625–632 (1995)
7.
Zurück zum Zitat Glorot, X., Bengio, Y.: Understanding the difficulty of training deep feedforward neural networks. In: Aistats, vol. 9, pp. 249–256 (2010) Glorot, X., Bengio, Y.: Understanding the difficulty of training deep feedforward neural networks. In: Aistats, vol. 9, pp. 249–256 (2010)
8.
Zurück zum Zitat Hall, M., Frank, E., Holmes, G., Pfahringer, B., Reutemann, P., Witten, I.H.: The weka data mining software: an update. ACM SIGKDD Explor. Newslett. 11(1), 10–18 (2009)CrossRef Hall, M., Frank, E., Holmes, G., Pfahringer, B., Reutemann, P., Witten, I.H.: The weka data mining software: an update. ACM SIGKDD Explor. Newslett. 11(1), 10–18 (2009)CrossRef
9.
Zurück zum Zitat Haxby, J.V., Connolly, A.C., Guntupalli, J.S.: Decoding neural representational spaces using multivariate pattern analysis. Annu. Rev. Neurosci. 37, 435–456 (2014)CrossRef Haxby, J.V., Connolly, A.C., Guntupalli, J.S.: Decoding neural representational spaces using multivariate pattern analysis. Annu. Rev. Neurosci. 37, 435–456 (2014)CrossRef
10.
Zurück zum Zitat Haykin, S.: Neural Networks: A Comprehensive Foundation, 2nd edn. Prentice Hall PTR, Upper Saddle River (1998)MATH Haykin, S.: Neural Networks: A Comprehensive Foundation, 2nd edn. Prentice Hall PTR, Upper Saddle River (1998)MATH
11.
Zurück zum Zitat Hinton, G.E., Salakhutdinov, R.R.: Reducing the dimensionality of data with neural networks. Science (New York, N.Y.) 313(5786), 504–507 (2006)MathSciNetCrossRefMATH Hinton, G.E., Salakhutdinov, R.R.: Reducing the dimensionality of data with neural networks. Science (New York, N.Y.) 313(5786), 504–507 (2006)MathSciNetCrossRefMATH
12.
Zurück zum Zitat Honorio, J.: Classification on brain functional magnetic resonance imaging: dimensionality, sample size, subject variability and noise. In: Chen, C. (ed.) Frontiers of Medical Imaging, pp. 266–290. World Scientific Publishing Company Pte Limited, Singapore (2014) Honorio, J.: Classification on brain functional magnetic resonance imaging: dimensionality, sample size, subject variability and noise. In: Chen, C. (ed.) Frontiers of Medical Imaging, pp. 266–290. World Scientific Publishing Company Pte Limited, Singapore (2014)
13.
Zurück zum Zitat Ide, J., Shenoy, P., Yu, A., Li, C.: Bayesian prediction and evaluation in the anterior cingulate cortex. J. Neurosci. 33(5), 2039–2047 (2013)CrossRef Ide, J., Shenoy, P., Yu, A., Li, C.: Bayesian prediction and evaluation in the anterior cingulate cortex. J. Neurosci. 33(5), 2039–2047 (2013)CrossRef
14.
Zurück zum Zitat Jones, N.: Computer science: the learning machines. Nature 505, 146–148 (2014)CrossRef Jones, N.: Computer science: the learning machines. Nature 505, 146–148 (2014)CrossRef
15.
Zurück zum Zitat Koyamada, S., Shikauchi, Y., Nakae, K., Koyama, M., Ishii, S.: Deep learning of fMRI big data: a novel approach to subject-transfer decoding. arXiv preprint arXiv:1502.00093 (2015) Koyamada, S., Shikauchi, Y., Nakae, K., Koyama, M., Ishii, S.: Deep learning of fMRI big data: a novel approach to subject-transfer decoding. arXiv preprint arXiv:​1502.​00093 (2015)
16.
Zurück zum Zitat LeCun, Y., Bengio, Y., Hinton, G.: Deep learning. Nature 521(7553), 436–444 (2015)CrossRef LeCun, Y., Bengio, Y., Hinton, G.: Deep learning. Nature 521(7553), 436–444 (2015)CrossRef
17.
Zurück zum Zitat Li, C.S.R., Huang, C., Constable, R.T., Sinha, R.: Imaging response inhibition in a stop-signal task: neural correlates independent of signal monitoring and post-response processing. J. Neurosci. 26(1), 186–192 (2006)CrossRef Li, C.S.R., Huang, C., Constable, R.T., Sinha, R.: Imaging response inhibition in a stop-signal task: neural correlates independent of signal monitoring and post-response processing. J. Neurosci. 26(1), 186–192 (2006)CrossRef
18.
Zurück zum Zitat Luo, X., Zhang, S., Hu, S., Bednarski, S.R., Erdman, E., Farr, O.M., Hong, K.I., Sinha, R., Mazure, C.M., shan, R., Li, C.: Error processing and gender-shared and -specific neural predictors of relapse in cocaine dependence. Brain 136(4), 1231–1244 (2013)CrossRef Luo, X., Zhang, S., Hu, S., Bednarski, S.R., Erdman, E., Farr, O.M., Hong, K.I., Sinha, R., Mazure, C.M., shan, R., Li, C.: Error processing and gender-shared and -specific neural predictors of relapse in cocaine dependence. Brain 136(4), 1231–1244 (2013)CrossRef
19.
Zurück zum Zitat Markoff, J.: Scientists See Promise in Deep-Learning Programs. New York Times, Manhattan (2012) Markoff, J.: Scientists See Promise in Deep-Learning Programs. New York Times, Manhattan (2012)
21.
Zurück zum Zitat de Oliveira, F.A., Nobre, C.N., Zárate, L.E.: Applying artificial neural networks to prediction of stock price and improvement of the directional prediction index-case study of PETR4, Petrobras, Brazil. Expert Syst. Appl. 40(18), 7596–7606 (2013)CrossRef de Oliveira, F.A., Nobre, C.N., Zárate, L.E.: Applying artificial neural networks to prediction of stock price and improvement of the directional prediction index-case study of PETR4, Petrobras, Brazil. Expert Syst. Appl. 40(18), 7596–7606 (2013)CrossRef
22.
Zurück zum Zitat Pahlavan, R., Omid, M., Akram, A.: Energy input-output analysis and application of artificial neural networks for predicting greenhouse basil production. Energy 37(1), 171–176 (2012)CrossRef Pahlavan, R., Omid, M., Akram, A.: Energy input-output analysis and application of artificial neural networks for predicting greenhouse basil production. Energy 37(1), 171–176 (2012)CrossRef
23.
Zurück zum Zitat Plis, S.M., Hjelm, D.R., Salakhutdinov, R., Allen, E.A., Bockholt, H.J., Long, J.D., Johnson, H.J., Paulsen, J.S., Turner, J.A., Calhoun, V.D.: Deep learning for neuroimaging: a validation study. Front. Neurosci. 8(August), 1–11 (2014) Plis, S.M., Hjelm, D.R., Salakhutdinov, R., Allen, E.A., Bockholt, H.J., Long, J.D., Johnson, H.J., Paulsen, J.S., Turner, J.A., Calhoun, V.D.: Deep learning for neuroimaging: a validation study. Front. Neurosci. 8(August), 1–11 (2014)
24.
Zurück zum Zitat Roebroeck, A., Formisano, E., Goebel, R.: Mapping directed influence over the brain using granger causality and fMRI. Neuroimage 25(1), 230–242 (2005)CrossRef Roebroeck, A., Formisano, E., Goebel, R.: Mapping directed influence over the brain using granger causality and fMRI. Neuroimage 25(1), 230–242 (2005)CrossRef
25.
Zurück zum Zitat Smith, S.M., Nichols, T.E., Vidaurre, D., Winkler, A.M., Behrens, T.E.J., Glasser, M.F., Ugurbil, K., Barch, D.M., Van Essen, D.C., Miller, K.L.: A positive-negative mode of population covariation links brain connectivity, demographics and behavior. Nat. Neurosci. 18(11), 1565–1567 (2015)CrossRef Smith, S.M., Nichols, T.E., Vidaurre, D., Winkler, A.M., Behrens, T.E.J., Glasser, M.F., Ugurbil, K., Barch, D.M., Van Essen, D.C., Miller, K.L.: A positive-negative mode of population covariation links brain connectivity, demographics and behavior. Nat. Neurosci. 18(11), 1565–1567 (2015)CrossRef
26.
Zurück zum Zitat Tomasi, D., Volkow, N.D., Wang, R., Carrillo, J.H., Maloney, T., Alia-Klein, N., Woicik, P.A., Telang, F., Goldstein, R.Z.: Disrupted functional connectivity with dopaminergic midbrain in cocaine abusers. PLoS ONE 5(5), 1–10 (2010)CrossRef Tomasi, D., Volkow, N.D., Wang, R., Carrillo, J.H., Maloney, T., Alia-Klein, N., Woicik, P.A., Telang, F., Goldstein, R.Z.: Disrupted functional connectivity with dopaminergic midbrain in cocaine abusers. PLoS ONE 5(5), 1–10 (2010)CrossRef
27.
Zurück zum Zitat Zhang, S., Hu, S., Bednarski, S.R., Erdman, E., Li, C.S.: Error-related functional connectivity of the thalamus in cocaine dependence. Neuroimage Clin. 4, 585–592 (2014)CrossRef Zhang, S., Hu, S., Bednarski, S.R., Erdman, E., Li, C.S.: Error-related functional connectivity of the thalamus in cocaine dependence. Neuroimage Clin. 4, 585–592 (2014)CrossRef
Metadaten
Titel
Classification of Cocaine Dependents from fMRI Data Using Cluster-Based Stratification and Deep Learning
verfasst von
Jeferson S. Santos
Ricardo M. Savii
Jaime S. Ide
Chiang-Shan R. Li
Marcos G. Quiles
Márcio P. Basgalupp
Copyright-Jahr
2017
DOI
https://doi.org/10.1007/978-3-319-62392-4_22