Skip to main content

2016 | OriginalPaper | Buchkapitel

Clustering of MRI Radiomics Features for Glioblastoma Multiforme: An Initial Study

verfasst von : Zhi-Cheng Li, Qi-Hua Li, Bo-Lin Song, Yin-Sheng Chen, Qiu-Chang Sun, Yao-Qin Xie, Lei Wang

Erschienen in: Medical Imaging and Augmented Reality

Verlag: Springer International Publishing

Aktivieren Sie unsere intelligente Suche, um passende Fachinhalte oder Patente zu finden.

search-config
loading …

Abstract

This paper proposed a radiomics model from magnetic resonance imaging (MRI) for Glioblastoma Multiforme (GBM) patients. One challenge of radiomics study is to reduce the redundancy of the features. Totally 466 radiomics features were extracted from automatically segmented tumors from T1, T1 contrast, T2, and FLAIR MRIs. The consensus clustering method was used and 10 feature clusters were obtained. All clusters had a prognostic association with survival, where three clusters had a mean C-index \(\ge \)0.60. The medoid features in each clusters with highest C-index were selected as radiomics signature candidates. The maximum and mean C-indices of the medoids are 0.75 and 0.68. The results demonstrated that the clusters reduced the data redundancy as well as generated clinical relevant radiomics features.

Sie haben noch keine Lizenz? Dann Informieren Sie sich jetzt über unsere Produkte:

Springer Professional "Wirtschaft+Technik"

Online-Abonnement

Mit Springer Professional "Wirtschaft+Technik" erhalten Sie Zugriff auf:

  • über 102.000 Bücher
  • über 537 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Maschinenbau + Werkstoffe
  • Versicherung + Risiko

Jetzt Wissensvorsprung sichern!

Springer Professional "Technik"

Online-Abonnement

Mit Springer Professional "Technik" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 390 Zeitschriften

aus folgenden Fachgebieten:

  • Automobil + Motoren
  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Elektrotechnik + Elektronik
  • Energie + Nachhaltigkeit
  • Maschinenbau + Werkstoffe




 

Jetzt Wissensvorsprung sichern!

Springer Professional "Wirtschaft"

Online-Abonnement

Mit Springer Professional "Wirtschaft" erhalten Sie Zugriff auf:

  • über 67.000 Bücher
  • über 340 Zeitschriften

aus folgenden Fachgebieten:

  • Bauwesen + Immobilien
  • Business IT + Informatik
  • Finance + Banking
  • Management + Führung
  • Marketing + Vertrieb
  • Versicherung + Risiko




Jetzt Wissensvorsprung sichern!

Literatur
1.
Zurück zum Zitat Dolecek, T.A., Propp, J.M., Stroup, N.E., Kruchko, C.: CBTRUS statistical report: primary brain and central nervous system tumors diagnosed in united states in 2005–2009. Neuro-Oncol. 14(Suppl. 5), v1–v49 (2012)CrossRef Dolecek, T.A., Propp, J.M., Stroup, N.E., Kruchko, C.: CBTRUS statistical report: primary brain and central nervous system tumors diagnosed in united states in 2005–2009. Neuro-Oncol. 14(Suppl. 5), v1–v49 (2012)CrossRef
2.
Zurück zum Zitat Reardon, D.A., Wen, P.Y.: Glioma in 2014: unravelling tumour heterogeneity-implications for therapy. Nat. Rev. Clin. Oncol. 12, 69–70 (2015)CrossRef Reardon, D.A., Wen, P.Y.: Glioma in 2014: unravelling tumour heterogeneity-implications for therapy. Nat. Rev. Clin. Oncol. 12, 69–70 (2015)CrossRef
3.
Zurück zum Zitat Kumar, V., Gu, Y., Basu, S., et al.: Radiomics: the process and the challenges. Magn. Reson. Imaging 30, 1234–1248 (2012)CrossRef Kumar, V., Gu, Y., Basu, S., et al.: Radiomics: the process and the challenges. Magn. Reson. Imaging 30, 1234–1248 (2012)CrossRef
4.
Zurück zum Zitat Gillies, R.J., Kinahan, P.E., Hricak, H.: Radiomics: images are more than pictures, they are data. Radiology 278(2), 563–577 (2016)CrossRef Gillies, R.J., Kinahan, P.E., Hricak, H.: Radiomics: images are more than pictures, they are data. Radiology 278(2), 563–577 (2016)CrossRef
5.
Zurück zum Zitat Aerts, H.J.W.L., Velazquez, E.R., Leijenaar, R.T.H., et al.: Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach. Nat. Commun. 5, 4006 (2014) Aerts, H.J.W.L., Velazquez, E.R., Leijenaar, R.T.H., et al.: Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach. Nat. Commun. 5, 4006 (2014)
6.
Zurück zum Zitat Gevaert, O., Mitchell, L.A., Achrol, A.S., et al.: Glioblastoma multiforme: exploratory radiogenomic analysis by using quantitative image feature. Radiology 273(1), 168–174 (2014)CrossRef Gevaert, O., Mitchell, L.A., Achrol, A.S., et al.: Glioblastoma multiforme: exploratory radiogenomic analysis by using quantitative image feature. Radiology 273(1), 168–174 (2014)CrossRef
7.
Zurück zum Zitat Vallires, M., Freeman, C.R., Skamene, S.R., et al.: A radiomics model from joint FDG-PET and MRI texture features for the prediction of lung metastases in soft-tissue sarcomas of the extremities. Phys. Med. Biol. 60, 5471–5496 (2015)CrossRef Vallires, M., Freeman, C.R., Skamene, S.R., et al.: A radiomics model from joint FDG-PET and MRI texture features for the prediction of lung metastases in soft-tissue sarcomas of the extremities. Phys. Med. Biol. 60, 5471–5496 (2015)CrossRef
8.
Zurück zum Zitat O’Connor, J.P., Rose, C.J., Waterton, J.C., et al.: Imaging intratumor heterogeneity: role in therapy response, resistance, and clinical outcome. Clin. Cancer Res. 21(2), 249–257 (2015)CrossRef O’Connor, J.P., Rose, C.J., Waterton, J.C., et al.: Imaging intratumor heterogeneity: role in therapy response, resistance, and clinical outcome. Clin. Cancer Res. 21(2), 249–257 (2015)CrossRef
9.
Zurück zum Zitat Cui, Y., Tha, K.K., Terasaka, S., et al.: Prognostic imaging biomarkers in glioblastoma: development and independent validation on the basis of multiregion and quantitative analysis of MR images. Radiology 278(2), 546–553 (2016)CrossRef Cui, Y., Tha, K.K., Terasaka, S., et al.: Prognostic imaging biomarkers in glioblastoma: development and independent validation on the basis of multiregion and quantitative analysis of MR images. Radiology 278(2), 546–553 (2016)CrossRef
10.
Zurück zum Zitat Velazquez, E.R., et al.: Fully automatic GBM segmentation in the TCGA-GBM dataset: prognosis and correlation with VASARI features. Sci. Rep. 5, 16822 (2015)CrossRef Velazquez, E.R., et al.: Fully automatic GBM segmentation in the TCGA-GBM dataset: prognosis and correlation with VASARI features. Sci. Rep. 5, 16822 (2015)CrossRef
11.
Zurück zum Zitat Parmar, C., et al.: Radiomic feature clusters and prognostic signatures specific for lung and head & neck cancer. Sci. Rep. 5, 11044 (2015)CrossRef Parmar, C., et al.: Radiomic feature clusters and prognostic signatures specific for lung and head & neck cancer. Sci. Rep. 5, 11044 (2015)CrossRef
12.
Zurück zum Zitat Parmar, C., et al.: Machine learning methods for quantitative radiomic biomarkers. Sci. Rep. 5, 13087 (2015)CrossRef Parmar, C., et al.: Machine learning methods for quantitative radiomic biomarkers. Sci. Rep. 5, 13087 (2015)CrossRef
13.
Zurück zum Zitat Menze, B.H., Jakab, A., Bauer, S., et al.: The multimodal brain tumor image segmentation benchmark (BRATS). IEEE Trans. Med. Imaging 34(10), 1993–2024 (2014)CrossRef Menze, B.H., Jakab, A., Bauer, S., et al.: The multimodal brain tumor image segmentation benchmark (BRATS). IEEE Trans. Med. Imaging 34(10), 1993–2024 (2014)CrossRef
14.
Zurück zum Zitat Zhang, J., Barborial, D.P., Hobbs, H., et al.: A fully automatic extraction of magnetic resonance image features in glioblastoma patients. Med. Phys. 41(4), 042301 (2014)CrossRef Zhang, J., Barborial, D.P., Hobbs, H., et al.: A fully automatic extraction of magnetic resonance image features in glioblastoma patients. Med. Phys. 41(4), 042301 (2014)CrossRef
15.
Zurück zum Zitat Monti, S., Tamayo, P., Mesirov, J., Golub, T.: Consensus clustering: a resampling-based method for class discovery and visualization of gene expression microarray data. Mach. Learn. 52, 91–118 (2003)CrossRefMATH Monti, S., Tamayo, P., Mesirov, J., Golub, T.: Consensus clustering: a resampling-based method for class discovery and visualization of gene expression microarray data. Mach. Learn. 52, 91–118 (2003)CrossRefMATH
16.
Zurück zum Zitat Wilkerson, M.D., Hayes, D.N.: ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking. Bioinformatics 26, 1572–1573 (2010)CrossRef Wilkerson, M.D., Hayes, D.N.: ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking. Bioinformatics 26, 1572–1573 (2010)CrossRef
17.
Zurück zum Zitat Pencina, M.J., D’Agostino, R.B.: Overall C as a measure of discrimination in survival analysis: model specific population value and confidence interval estimation. Stat. Med. 23, 2109–2123 (2004)CrossRef Pencina, M.J., D’Agostino, R.B.: Overall C as a measure of discrimination in survival analysis: model specific population value and confidence interval estimation. Stat. Med. 23, 2109–2123 (2004)CrossRef
Metadaten
Titel
Clustering of MRI Radiomics Features for Glioblastoma Multiforme: An Initial Study
verfasst von
Zhi-Cheng Li
Qi-Hua Li
Bo-Lin Song
Yin-Sheng Chen
Qiu-Chang Sun
Yao-Qin Xie
Lei Wang
Copyright-Jahr
2016
DOI
https://doi.org/10.1007/978-3-319-43775-0_28