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2018 | OriginalPaper | Buchkapitel

Contour Propagation in CT Scans with Convolutional Neural Networks

verfasst von : Jean Léger, Eliott Brion, Umair Javaid, John Lee, Christophe De Vleeschouwer, Benoit Macq

Erschienen in: Advanced Concepts for Intelligent Vision Systems

Verlag: Springer International Publishing

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Abstract

Although deep convolutional neural networks (CNNs) have outperformed state-of-the-art in many medical image segmentation tasks, deep network architectures generally fail in exploiting common sense prior to drive the segmentation. In particular, the availability of a segmented (source) image observed in a CT slice that is adjacent to the slice to be segmented (or target image) has not been considered to improve the deep models segmentation accuracy. In this paper, we investigate a CNN architecture that maps a joint input, composed of the target image and the source segmentation, to a target segmentation. We observe that our solution succeeds in taking advantage of the source segmentation when it is sufficiently close to the target segmentation, without being penalized when the source is far from the target.

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Literatur
1.
Zurück zum Zitat Mazurowski, M.A., Buda, M., Saha, A., Bashir, M.R.: Deep learning in radiology: an overview of the concepts and a survey of the state of the art. arXiv preprint arXiv:1802.08717 (2018) Mazurowski, M.A., Buda, M., Saha, A., Bashir, M.R.: Deep learning in radiology: an overview of the concepts and a survey of the state of the art. arXiv preprint arXiv:​1802.​08717 (2018)
2.
Zurück zum Zitat Sharp, G., et al.: Vision 20/20: perspectives on automated image segmentation for radiotherapy. Med. Phys. 41(5), 050902 (2014) Sharp, G., et al.: Vision 20/20: perspectives on automated image segmentation for radiotherapy. Med. Phys. 41(5), 050902 (2014)
3.
Zurück zum Zitat Cha, K.H., et al.: Bladder cancer treatment response assessment in CT using radiomics with deep-learning. Sci. Rep. 7(1), 8738 (2017)CrossRef Cha, K.H., et al.: Bladder cancer treatment response assessment in CT using radiomics with deep-learning. Sci. Rep. 7(1), 8738 (2017)CrossRef
4.
Zurück zum Zitat Iglesias, J.E., Sabuncu, M.R.: Multi-atlas segmentation of biomedical images: a survey. Med. Image Anal. 24(1), 205–219 (2015)CrossRef Iglesias, J.E., Sabuncu, M.R.: Multi-atlas segmentation of biomedical images: a survey. Med. Image Anal. 24(1), 205–219 (2015)CrossRef
5.
Zurück zum Zitat Cremers, D., Rousson, M., Deriche, R.: A review of statistical approaches to level set segmentation: integrating color, texture, motion and shape. Int. J. Comput. Vis. 72(2), 195–215 (2007)CrossRef Cremers, D., Rousson, M., Deriche, R.: A review of statistical approaches to level set segmentation: integrating color, texture, motion and shape. Int. J. Comput. Vis. 72(2), 195–215 (2007)CrossRef
6.
Zurück zum Zitat Heimann, T., Meinzer, H.P.: Statistical shape models for 3D medical image segmentation: a review. Med. Image Anal. 13(4), 543–563 (2009)CrossRef Heimann, T., Meinzer, H.P.: Statistical shape models for 3D medical image segmentation: a review. Med. Image Anal. 13(4), 543–563 (2009)CrossRef
7.
Zurück zum Zitat Polan, D.F., Brady, S.L., Kaufman, R.A.: Tissue segmentation of computed tomography images using a random forest algorithm: a feasibility study. Phys. Med. Biol. 61(17), 6553 (2016)CrossRef Polan, D.F., Brady, S.L., Kaufman, R.A.: Tissue segmentation of computed tomography images using a random forest algorithm: a feasibility study. Phys. Med. Biol. 61(17), 6553 (2016)CrossRef
8.
Zurück zum Zitat Luo, S., Hu, Q., He, X., Li, J., Jin, J.S., Park, M.: Automatic liver parenchyma segmentation from abdominal CT images using support vector machines. In: ICME International Conference on Complex Medical Engineering, CME 2009, pp. 1–5. IEEE (2009) Luo, S., Hu, Q., He, X., Li, J., Jin, J.S., Park, M.: Automatic liver parenchyma segmentation from abdominal CT images using support vector machines. In: ICME International Conference on Complex Medical Engineering, CME 2009, pp. 1–5. IEEE (2009)
9.
Zurück zum Zitat Hu, Y.C.J., Grossberg, M.D., Mageras, G.S.: Semi-automatic medical image segmentation with adaptive local statistics in conditional random fields framework. In: 30th Annual International Conference of the IEEE on Engineering in Medicine and Biology Society, EMBS 2008, pp. 3099–3102. IEEE (2008) Hu, Y.C.J., Grossberg, M.D., Mageras, G.S.: Semi-automatic medical image segmentation with adaptive local statistics in conditional random fields framework. In: 30th Annual International Conference of the IEEE on Engineering in Medicine and Biology Society, EMBS 2008, pp. 3099–3102. IEEE (2008)
10.
Zurück zum Zitat Tong, T., et al.: Discriminative dictionary learning for abdominal multi-organ segmentation. Med. Image Anal. 23(1), 92–104 (2015) Tong, T., et al.: Discriminative dictionary learning for abdominal multi-organ segmentation. Med. Image Anal. 23(1), 92–104 (2015)
11.
Zurück zum Zitat Gao, Y., Shao, Y., Lian, J., Wang, A.Z., Chen, R.C., Shen, D.: Accurate segmentation of CT male pelvic organs via regression-based deformable models and multi-task random forests. IEEE Trans. Med. Imaging 35(6), 1532–1543 (2016)CrossRef Gao, Y., Shao, Y., Lian, J., Wang, A.Z., Chen, R.C., Shen, D.: Accurate segmentation of CT male pelvic organs via regression-based deformable models and multi-task random forests. IEEE Trans. Med. Imaging 35(6), 1532–1543 (2016)CrossRef
12.
13.
Zurück zum Zitat Litjens, G., et al.: A survey on deep learning in medical image analysis. Med. Image Anal. 42, 60–88 (2017) Litjens, G., et al.: A survey on deep learning in medical image analysis. Med. Image Anal. 42, 60–88 (2017)
14.
Zurück zum Zitat Long, J., Shelhamer, E., Darrell, T.: Fully convolutional networks for semantic segmentation. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 3431–3440 (2015) Long, J., Shelhamer, E., Darrell, T.: Fully convolutional networks for semantic segmentation. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 3431–3440 (2015)
16.
Zurück zum Zitat Çiçek, Ö., Abdulkadir, A., Lienkamp, S.S., Brox, T., Ronneberger, O.: 3D U-Net: learning dense volumetric segmentation from sparse annotation. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9901, pp. 424–432. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46723-8_49CrossRef Çiçek, Ö., Abdulkadir, A., Lienkamp, S.S., Brox, T., Ronneberger, O.: 3D U-Net: learning dense volumetric segmentation from sparse annotation. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9901, pp. 424–432. Springer, Cham (2016). https://​doi.​org/​10.​1007/​978-3-319-46723-8_​49CrossRef
17.
Zurück zum Zitat Milletari, F., Navab, N., Ahmadi, S.A.: V-net: fully convolutional neural networks for volumetric medical image segmentation. In: 2016 Fourth International Conference on 3D Vision (3DV), pp. 565–571. IEEE (2016) Milletari, F., Navab, N., Ahmadi, S.A.: V-net: fully convolutional neural networks for volumetric medical image segmentation. In: 2016 Fourth International Conference on 3D Vision (3DV), pp. 565–571. IEEE (2016)
18.
Zurück zum Zitat Ibragimov, B., Xing, L.: Segmentation of organs-at-risks in head and neck CT images using convolutional neural networks. Med. Phys. 44(2), 547–557 (2017)CrossRef Ibragimov, B., Xing, L.: Segmentation of organs-at-risks in head and neck CT images using convolutional neural networks. Med. Phys. 44(2), 547–557 (2017)CrossRef
19.
Zurück zum Zitat Kazemifar, S., et al.: Segmentation of the prostate and organs at risk in male pelvic CT images using deep learning. arXiv preprint arXiv:1802.09587 (2018) Kazemifar, S., et al.: Segmentation of the prostate and organs at risk in male pelvic CT images using deep learning. arXiv preprint arXiv:​1802.​09587 (2018)
20.
Zurück zum Zitat Roth, H.R., et al.: Hierarchical 3D fully convolutional networks for multi-organ segmentation. arXiv preprint arXiv:1704.06382 (2017) Roth, H.R., et al.: Hierarchical 3D fully convolutional networks for multi-organ segmentation. arXiv preprint arXiv:​1704.​06382 (2017)
22.
Zurück zum Zitat Milletari, F., Rothberg, A., Jia, J., Sofka, M.: Integrating statistical prior knowledge into convolutional neural networks. In: Descoteaux, M., Maier-Hein, L., Franz, A., Jannin, P., Collins, D.L., Duchesne, S. (eds.) MICCAI 2017. LNCS, vol. 10433, pp. 161–168. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-66182-7_19CrossRef Milletari, F., Rothberg, A., Jia, J., Sofka, M.: Integrating statistical prior knowledge into convolutional neural networks. In: Descoteaux, M., Maier-Hein, L., Franz, A., Jannin, P., Collins, D.L., Duchesne, S. (eds.) MICCAI 2017. LNCS, vol. 10433, pp. 161–168. Springer, Cham (2017). https://​doi.​org/​10.​1007/​978-3-319-66182-7_​19CrossRef
23.
Zurück zum Zitat Trullo, R., Petitjean, C., Ruan, S., Dubray, B., Nie, D., Shen, D.: Segmentation of organs at risk in thoracic CT images using a sharpmask architecture and conditional random fields. In: 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017), pp. 1003–1006. IEEE (2017) Trullo, R., Petitjean, C., Ruan, S., Dubray, B., Nie, D., Shen, D.: Segmentation of organs at risk in thoracic CT images using a sharpmask architecture and conditional random fields. In: 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017), pp. 1003–1006. IEEE (2017)
Metadaten
Titel
Contour Propagation in CT Scans with Convolutional Neural Networks
verfasst von
Jean Léger
Eliott Brion
Umair Javaid
John Lee
Christophe De Vleeschouwer
Benoit Macq
Copyright-Jahr
2018
DOI
https://doi.org/10.1007/978-3-030-01449-0_32